Mutagenetix > Incidental Mutation

Incidental Mutation 'R8140:Cd37'

632476

Institutional Source

Beutler Lab

Gene Symbol

Cd37

Ensembl Gene

ENSMUSG00000030798

Gene Name

CD37 antigen

Synonyms

Tspan26

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8140 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

45233632-45239115 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 45238535 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 58 (I58T)

Ref Sequence

ENSEMBL: ENSMUSP00000033063 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033060] [ENSMUST00000033063] [ENSMUST00000097216] [ENSMUST00000098461] [ENSMUST00000107801] [ENSMUST00000209779] [ENSMUST00000210078] [ENSMUST00000210226] [ENSMUST00000210372] [ENSMUST00000211373] [ENSMUST00000213347]

AlphaFold

Q61470

Predicted Effect

probably benign
Transcript: ENSMUST00000033060

SMART Domains

Protein: ENSMUSP00000033060
Gene: ENSMUSG00000030796

Domain	Start	End	E-Value	Type
TEA	36	107	4.84e-52	SMART
low complexity region	201	217	N/A	INTRINSIC
PDB:3L15\|B	218	445	1e-143	PDB

Predicted Effect

probably damaging
Transcript: ENSMUST00000033063
AA Change: I58T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000033063
Gene: ENSMUSG00000030798
AA Change: I58T

Domain	Start	End	E-Value	Type
Pfam:Tetraspannin	31	292	9.5e-51	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000097216

SMART Domains

Protein: ENSMUSP00000103430
Gene: ENSMUSG00000030796

Domain	Start	End	E-Value	Type
low complexity region	11	38	N/A	INTRINSIC
Pfam:TEA	40	402	1.8e-137	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000098461
AA Change: I36T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000096061
Gene: ENSMUSG00000030798
AA Change: I36T

Domain	Start	End	E-Value	Type
Pfam:Tetraspannin	10	270	3.5e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107801

SMART Domains

Protein: ENSMUSP00000103431
Gene: ENSMUSG00000030796

Domain	Start	End	E-Value	Type
TEA	36	107	4.84e-52	SMART
low complexity region	201	217	N/A	INTRINSIC
PDB:3L15\|B	218	445	1e-143	PDB

Predicted Effect

probably damaging
Transcript: ENSMUST00000209779
AA Change: I36T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000210078
AA Change: I33T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000210226

Predicted Effect

probably damaging
Transcript: ENSMUST00000210372
AA Change: I36T

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

Predicted Effect

probably damaging
Transcript: ENSMUST00000211373
AA Change: I36T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000213347

Coding Region Coverage

1x: 99.8%
3x: 99.6%
10x: 98.6%
20x: 93.9%

Validation Efficiency

97% (64/66)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein that is known to complex with integrins and other transmembrane 4 superfamily proteins. It may play a role in T-cell-B-cell interactions. Alternate splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutation of this gene results in reduced levels of IgG1 immunoglobulins and impaired antibody response to T cell dependent antigens. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610040J01Rik	T	A	5: 63,898,611	V230E	possibly damaging	Het
Amotl1	G	A	9: 14,572,715		probably null	Het
Atp7b	C	A	8: 22,028,560	E87D	probably damaging	Het
Bcat2	C	T	7: 45,588,351	P347L	probably damaging	Het
Brox	A	T	1: 183,293,873		probably null	Het
Cep295	A	T	9: 15,341,533	M333K	probably benign	Het
Chtop	A	G	3: 90,505,393		probably null	Het
Cpa2	A	T	6: 30,544,905	K54N	probably benign	Het
Cpa6	A	G	1: 10,325,294	S383P	probably damaging	Het
Dnah7a	A	T	1: 53,501,589	I2542N	probably benign	Het
Eif5b	G	A	1: 38,051,276	V1179I	probably benign	Het
Erbin	T	C	13: 103,920,294		probably null	Het
Fastkd5	A	T	2: 130,615,250	D473E	possibly damaging	Het
Fchsd1	T	C	18: 37,964,342	E372G	probably damaging	Het
Fgl1	T	C	8: 41,200,609		probably null	Het
Fzd8	T	G	18: 9,213,797	V293G	probably damaging	Het
Gm4787	T	A	12: 81,378,151	H411L	probably benign	Het
Gm49380	G	T	9: 44,111,972	D326E	probably benign	Het
Hcrtr1	G	A	4: 130,135,290	R240C	probably damaging	Het
Hdac5	A	T	11: 102,197,355	Y948N	probably damaging	Het
Hepacam	A	G	9: 37,383,871	S301G	probably benign	Het
Htra4	A	T	8: 25,030,558	D362E	possibly damaging	Het
Ighv1-9	G	A	12: 114,583,741	P60L	probably damaging	Het
Kcnq3	A	G	15: 65,995,541	I751T	probably damaging	Het
Magi3	T	C	3: 104,034,086	Y851C	probably damaging	Het
Mefv	A	G	16: 3,713,635	S470P	probably benign	Het
Mfsd2a	C	T	4: 122,949,298	V397I	probably benign	Het
Mroh1	C	A	15: 76,433,873	H867N	probably benign	Het
Mthfd1l	C	T	10: 4,007,745	R261*	probably null	Het
Myo3a	A	G	2: 22,407,346	I725M	probably damaging	Het
Neb	T	C	2: 52,209,540	D4766G	possibly damaging	Het
Nek11	G	T	9: 105,392,957	P22Q	probably damaging	Het
Olfr1179	T	C	2: 88,402,113	T274A	possibly damaging	Het
Olfr1497	A	T	19: 13,795,239	V124E	possibly damaging	Het
Olfr178	T	C	16: 58,889,585	T212A	probably benign	Het
Peg10	C	G	6: 4,756,113	Q230E	unknown	Het
Pipox	T	C	11: 77,883,909	D116G	probably benign	Het
Pkd1l2	C	T	8: 117,047,497	R993H	probably benign	Het
Pkdrej	A	C	15: 85,818,410	N1108K	probably damaging	Het
Polr2a	C	T	11: 69,746,376	R291Q	probably benign	Het
Pomt1	T	A	2: 32,244,297	Y277N	probably damaging	Het
Rasal2	A	G	1: 157,299,235	S78P	probably damaging	Het
Rgl1	A	T	1: 152,557,501	L171Q	probably damaging	Het
Sfta2	A	G	17: 35,601,774	E14G	unknown	Het
Sh3rf3	T	A	10: 59,049,355	S353R	possibly damaging	Het
Slc37a1	A	T	17: 31,322,259	I242F	probably damaging	Het
Srfbp1	T	A	18: 52,488,690	D274E	probably damaging	Het
Syne2	T	A	12: 75,912,353	S685R	possibly damaging	Het
Tenm4	A	C	7: 96,895,176	D2170A	probably damaging	Het
Tnr	A	G	1: 159,863,695	T472A	probably damaging	Het
Tspan9	T	C	6: 127,965,278	H203R	probably damaging	Het
Ttn	T	C	2: 76,771,651	T18556A	possibly damaging	Het
Usp25	T	A	16: 77,071,681	Y323*	probably null	Het
Usp31	G	T	7: 121,649,026	R1065S	possibly damaging	Het
Vmn2r103	A	T	17: 19,811,796	T611S	probably damaging	Het
Wdfy4	A	G	14: 33,142,360	V552A		Het
Zap70	G	T	1: 36,771,181	R124L	possibly damaging	Het
Zfand6	A	T	7: 84,632,749	S91T	possibly damaging	Het

Other mutations in Cd37

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01868:Cd37	APN	7	45236179	missense	probably benign	0.01
IGL02703:Cd37	APN	7	45235525	missense	probably benign	0.07
Blocker	UTSW	7	45237174	missense	probably damaging	0.98
R4888:Cd37	UTSW	7	45233935	missense	probably damaging	0.99
R6197:Cd37	UTSW	7	45237174	missense	probably damaging	0.98
R7048:Cd37	UTSW	7	45238464	unclassified	probably benign
R8924:Cd37	UTSW	7	45238685	missense	probably damaging	1.00
R9051:Cd37	UTSW	7	45237198	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGCACACATCCAGCTTACTG -3'
(R):5'- ATGTCCGCCCAAGAGAGTTG -3'

Sequencing Primer
(F):5'- AGTGGGGTGCCAGTCAG -3'
(R):5'- GAGTTGCCTCAGCCTCATCAAG -3'

Posted On

2020-06-30