Incidental Mutation 'R8146:Anks6'
| ID |
632799 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Anks6
|
| Ensembl Gene |
ENSMUSG00000066191 |
| Gene Name |
ankyrin repeat and sterile alpha motif domain containing 6 |
| Synonyms |
SamCystin, 2210417J20Rik, Samd6, b2b1801.1Clo, LOC269533 |
| MMRRC Submission |
067574-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R8146 (G1)
|
| Quality Score |
199.009 |
|
Status
|
Not validated
|
| Chromosome |
4 |
| Chromosomal Location |
47015669-47057427 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 47043605 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Alanine to Serine
at position 375
(A375S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000081665
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000084616]
[ENSMUST00000107747]
[ENSMUST00000229609]
|
| AlphaFold |
Q6GQX6 |
| Predicted Effect |
unknown
Transcript: ENSMUST00000084616
AA Change: A375S
|
| SMART Domains |
Protein: ENSMUSP00000081665
Gene: ENSMUSG00000066191
AA Change: A375S
| Domain | Start | End | E-Value | Type |
|---|
|
ANK
|
8 |
37 |
2.39e2 |
SMART |
|
ANK
|
68 |
97 |
5.62e-4 |
SMART |
|
ANK
|
101 |
130 |
2.05e-6 |
SMART |
|
ANK
|
134 |
163 |
1.9e-1 |
SMART |
|
ANK
|
181 |
210 |
8.99e-3 |
SMART |
|
ANK
|
215 |
244 |
7.83e-3 |
SMART |
|
ANK
|
282 |
312 |
5.87e2 |
SMART |
|
ANK
|
316 |
345 |
1.22e-4 |
SMART |
|
ANK
|
350 |
379 |
3.57e-6 |
SMART |
|
ANK
|
383 |
414 |
1.23e3 |
SMART |
|
low complexity region
|
539 |
575 |
N/A |
INTRINSIC |
|
low complexity region
|
619 |
673 |
N/A |
INTRINSIC |
|
SAM
|
700 |
766 |
2.73e-10 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000107747
AA Change: A375S
PolyPhen 2
Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000103376
Gene: ENSMUSG00000066191
AA Change: A375S
| Domain | Start | End | E-Value | Type |
|---|
|
ANK
|
8 |
37 |
2.39e2 |
SMART |
|
ANK
|
68 |
97 |
5.62e-4 |
SMART |
|
ANK
|
101 |
130 |
2.05e-6 |
SMART |
|
ANK
|
134 |
163 |
1.9e-1 |
SMART |
|
ANK
|
181 |
210 |
8.99e-3 |
SMART |
|
ANK
|
215 |
244 |
7.83e-3 |
SMART |
|
ANK
|
282 |
312 |
5.87e2 |
SMART |
|
ANK
|
316 |
345 |
1.22e-4 |
SMART |
|
ANK
|
350 |
379 |
3.57e-6 |
SMART |
|
ANK
|
383 |
414 |
1.23e3 |
SMART |
|
low complexity region
|
607 |
643 |
N/A |
INTRINSIC |
|
low complexity region
|
687 |
741 |
N/A |
INTRINSIC |
|
low complexity region
|
748 |
768 |
N/A |
INTRINSIC |
|
Blast:SAM
|
769 |
796 |
1e-9 |
BLAST |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000229609
AA Change: A375S
PolyPhen 2
Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)
|
| Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.6%
- 10x: 98.6%
- 20x: 95.2%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein containing multiple ankyrin repeats and a SAM domain. It is thought that this protein may localize to the proximal region of the primary cilium, and may play a role in renal and cardiovascular development. Mutations in this gene have been shown to cause a form of nephronophthisis (NPHP16), a chronic tubulo-interstitial nephritis. [provided by RefSeq, Jul 2015]
PHENOTYPE: Mice homozygous for an ENU-induced mutation exhibit complex congenital heart defects including TGA, DORV and septal defects associated with heterotaxy. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4921504E06Rik |
T |
G |
2: 19,498,814 (GRCm39) |
E393A |
possibly damaging |
Het |
| 4930550C14Rik |
A |
G |
9: 53,334,270 (GRCm39) |
D171G |
probably damaging |
Het |
| Abca13 |
T |
C |
11: 9,347,829 (GRCm39) |
Y3561H |
probably damaging |
Het |
| Adgra2 |
T |
A |
8: 27,604,202 (GRCm39) |
V464D |
probably damaging |
Het |
| Adgrl1 |
C |
A |
8: 84,657,618 (GRCm39) |
T408N |
possibly damaging |
Het |
| Anks1b |
G |
A |
10: 90,143,560 (GRCm39) |
R523Q |
probably damaging |
Het |
| Bbs10 |
T |
A |
10: 111,136,396 (GRCm39) |
I503K |
probably benign |
Het |
| Birc2 |
A |
G |
9: 7,818,797 (GRCm39) |
I598T |
probably damaging |
Het |
| Cbl |
A |
T |
9: 44,076,171 (GRCm39) |
D339E |
probably damaging |
Het |
| Cdh4 |
C |
A |
2: 179,515,871 (GRCm39) |
Q350K |
possibly damaging |
Het |
| Cep78 |
A |
G |
19: 15,933,727 (GRCm39) |
L617P |
probably damaging |
Het |
| Cnbd2 |
T |
G |
2: 156,170,281 (GRCm39) |
V122G |
probably damaging |
Het |
| Crem |
A |
T |
18: 3,288,007 (GRCm39) |
N158K |
possibly damaging |
Het |
| Cul1 |
T |
C |
6: 47,472,027 (GRCm39) |
V56A |
possibly damaging |
Het |
| Dop1b |
T |
A |
16: 93,546,827 (GRCm39) |
I277N |
possibly damaging |
Het |
| Exoc3 |
T |
C |
13: 74,340,784 (GRCm39) |
D340G |
probably benign |
Het |
| Exoc6b |
A |
C |
6: 84,885,176 (GRCm39) |
D254E |
probably benign |
Het |
| Fyttd1 |
A |
G |
16: 32,722,862 (GRCm39) |
K268E |
probably damaging |
Het |
| Gbp8 |
T |
A |
5: 105,178,844 (GRCm39) |
N157I |
probably benign |
Het |
| Hacd1 |
T |
A |
2: 14,049,605 (GRCm39) |
S118C |
probably damaging |
Het |
| Hcn4 |
A |
C |
9: 58,731,027 (GRCm39) |
E78A |
unknown |
Het |
| Inpp5e |
T |
A |
2: 26,289,274 (GRCm39) |
T549S |
probably benign |
Het |
| Kcnh4 |
T |
C |
11: 100,646,105 (GRCm39) |
N281S |
probably damaging |
Het |
| Kdm5b |
A |
G |
1: 134,552,864 (GRCm39) |
D1280G |
probably benign |
Het |
| Lrfn3 |
A |
G |
7: 30,059,304 (GRCm39) |
V307A |
probably benign |
Het |
| Mafb |
A |
G |
2: 160,208,298 (GRCm39) |
L100P |
probably damaging |
Het |
| Med24 |
C |
T |
11: 98,608,940 (GRCm39) |
G119R |
probably benign |
Het |
| Mvp |
G |
T |
7: 126,586,171 (GRCm39) |
P866Q |
probably benign |
Het |
| Or51l4 |
A |
G |
7: 103,404,510 (GRCm39) |
I94T |
probably damaging |
Het |
| Phykpl |
T |
C |
11: 51,476,408 (GRCm39) |
Y43H |
probably damaging |
Het |
| Prag1 |
T |
G |
8: 36,571,364 (GRCm39) |
L649R |
probably damaging |
Het |
| Ptgdr2 |
T |
C |
19: 10,918,361 (GRCm39) |
F293L |
probably damaging |
Het |
| Rasip1 |
T |
G |
7: 45,279,704 (GRCm39) |
S316A |
possibly damaging |
Het |
| Rlf |
G |
A |
4: 121,004,429 (GRCm39) |
S1627L |
probably benign |
Het |
| Rtl1 |
T |
C |
12: 109,557,145 (GRCm39) |
R1565G |
probably benign |
Het |
| Sart3 |
G |
A |
5: 113,886,018 (GRCm39) |
T572M |
probably damaging |
Het |
| Sec24b |
G |
T |
3: 129,789,573 (GRCm39) |
S816* |
probably null |
Het |
| Slamf1 |
C |
T |
1: 171,619,887 (GRCm39) |
P279L |
probably benign |
Het |
| Slc18a1 |
C |
A |
8: 69,495,401 (GRCm39) |
V368F |
possibly damaging |
Het |
| Tap1 |
A |
T |
17: 34,408,206 (GRCm39) |
D194V |
probably damaging |
Het |
| Tuba1c |
A |
G |
15: 98,935,496 (GRCm39) |
Y319C |
probably damaging |
Het |
| Unc79 |
T |
A |
12: 103,036,416 (GRCm39) |
I579N |
probably damaging |
Het |
| Zbtb22 |
G |
T |
17: 34,135,956 (GRCm39) |
V34L |
probably damaging |
Het |
|
| Other mutations in Anks6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00465:Anks6
|
APN |
4 |
47,046,054 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01886:Anks6
|
APN |
4 |
47,044,850 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02903:Anks6
|
APN |
4 |
47,045,004 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4131001:Anks6
|
UTSW |
4 |
47,027,109 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0632:Anks6
|
UTSW |
4 |
47,033,167 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1220:Anks6
|
UTSW |
4 |
47,025,767 (GRCm39) |
splice site |
probably benign |
|
|
R1398:Anks6
|
UTSW |
4 |
47,044,926 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R1479:Anks6
|
UTSW |
4 |
47,044,874 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1519:Anks6
|
UTSW |
4 |
47,027,152 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1713:Anks6
|
UTSW |
4 |
47,039,726 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1781:Anks6
|
UTSW |
4 |
47,043,639 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R1853:Anks6
|
UTSW |
4 |
47,049,387 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2364:Anks6
|
UTSW |
4 |
47,027,248 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R3790:Anks6
|
UTSW |
4 |
47,049,212 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4432:Anks6
|
UTSW |
4 |
47,044,905 (GRCm39) |
nonsense |
probably null |
|
|
R4700:Anks6
|
UTSW |
4 |
47,033,127 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R4847:Anks6
|
UTSW |
4 |
47,033,266 (GRCm39) |
missense |
probably benign |
|
|
R4876:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4877:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4878:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4879:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4961:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4962:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4968:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4970:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4971:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5092:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5113:Anks6
|
UTSW |
4 |
47,030,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5389:Anks6
|
UTSW |
4 |
47,038,900 (GRCm39) |
splice site |
probably benign |
|
|
R5569:Anks6
|
UTSW |
4 |
47,045,007 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5857:Anks6
|
UTSW |
4 |
47,039,736 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R5977:Anks6
|
UTSW |
4 |
47,035,748 (GRCm39) |
missense |
probably benign |
0.11 |
|
R5978:Anks6
|
UTSW |
4 |
47,049,252 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6933:Anks6
|
UTSW |
4 |
47,049,164 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7175:Anks6
|
UTSW |
4 |
47,046,268 (GRCm39) |
splice site |
probably null |
|
|
R7454:Anks6
|
UTSW |
4 |
47,038,919 (GRCm39) |
missense |
unknown |
|
|
R7874:Anks6
|
UTSW |
4 |
47,049,275 (GRCm39) |
missense |
unknown |
|
|
R8437:Anks6
|
UTSW |
4 |
47,030,705 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9454:Anks6
|
UTSW |
4 |
47,016,789 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R9462:Anks6
|
UTSW |
4 |
47,033,142 (GRCm39) |
missense |
unknown |
|
|
R9567:Anks6
|
UTSW |
4 |
47,044,880 (GRCm39) |
missense |
unknown |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CTTTTCTACAAATCAGCACAGGC -3'
(R):5'- TCGTTGTCCGGGAACATAGC -3'
Sequencing Primer
(F):5'- TCACTCACCAGGATCGTT -3'
(R):5'- TTCCAACCTCTGGTGAAAGG -3'
|
| Posted On |
2020-06-30 |
Incidental Mutation