Mutagenetix > Incidental Mutation

Incidental Mutation 'R8158:Clnk'

633353

Institutional Source

Beutler Lab

Gene Symbol

Clnk

Ensembl Gene

ENSMUSG00000039315

Gene Name

cytokine-dependent hematopoietic cell linker

Synonyms

MIST

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R8158 (G1)

Quality Score

223.009

Status

Not validated

Chromosome

Chromosomal Location

38706462-38876812 bp(-) (GRCm38)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to A at 38794911 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000128473 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169819] [ENSMUST00000171633]

AlphaFold

Q9QZE2

Predicted Effect

probably null
Transcript: ENSMUST00000169819

SMART Domains

Protein: ENSMUSP00000128473
Gene: ENSMUSG00000039315

Domain	Start	End	E-Value	Type
low complexity region	158	188	N/A	INTRINSIC
SH2	307	398	3.53e-19	SMART
low complexity region	414	427	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000171633

SMART Domains

Protein: ENSMUSP00000132779
Gene: ENSMUSG00000039315

Domain	Start	End	E-Value	Type
low complexity region	158	188	N/A	INTRINSIC
SH2	307	398	3.53e-19	SMART
low complexity region	414	427	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] MIST is a member of the SLP76 family of adaptors (see LCP2, MIM 601603; BLNK, MIM 604515). MIST plays a role in the regulation of immunoreceptor signaling, including PLC-gamma (PLCG1; MIM 172420)-mediated B cell antigen receptor (BCR) signaling and FC-epsilon R1 (see FCER1A, MIM 147140)-mediated mast cell degranulation (Cao et al., 1999 [PubMed 10562326]; Goitsuka et al., 2000, 2001 [PubMed 10744659] [PubMed 11463797]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a reporter allele display altered natural killer (NK) T cell physiology and enhanced NK cell cytolysis. Mice homozygous for knock-out allele display abnormal mast cell physiology as well as enhanced NK cell cytolysis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700016D06Rik	T	A	8: 11,665,056	D46V	probably damaging	Het
Abl2	T	A	1: 156,642,069	S968T	probably benign	Het
Adcy8	T	C	15: 64,783,806	D608G	probably benign	Het
Adgb	C	T	10: 10,378,734	V1162M	probably benign	Het
Agrn	A	G	4: 156,173,889	V1040A	probably benign	Het
Amer3	A	T	1: 34,587,660	T327S	possibly damaging	Het
Apaf1	C	T	10: 91,059,658	C426Y	probably benign	Het
Bsn	T	C	9: 108,110,033	D2840G	unknown	Het
Camsap1	A	T	2: 25,944,428	C406*	probably null	Het
Cbr2	A	T	11: 120,730,297	M158K	probably damaging	Het
Ccdc105	G	C	10: 78,748,675	Q338E	probably benign	Het
Cgrrf1	T	C	14: 46,853,735	S239P	probably benign	Het
Csad	T	C	15: 102,177,762	M445V	probably damaging	Het
Dnajb7	T	A	15: 81,407,399	N246Y	probably damaging	Het
Dok6	T	C	18: 89,473,947	I169V	probably benign	Het
Hist1h2bm	T	C	13: 21,722,461	Y122H	probably benign	Het
Il1f10	T	G	2: 24,291,255	I11R	possibly damaging	Het
Irs1	C	T	1: 82,289,533	V321M	probably damaging	Het
Itga9	T	C	9: 118,877,143	F938L	probably damaging	Het
Kif7	T	C	7: 79,704,694	D781G	probably damaging	Het
Klhl41	A	T	2: 69,671,161	N322I	probably damaging	Het
Krtap31-1	T	G	11: 99,908,075	C35G	possibly damaging	Het
Lsm11	A	T	11: 45,933,997	D234E	probably benign	Het
Med6	T	C	12: 81,573,903	K223R	probably benign	Het
Mfsd4b2	G	A	10: 39,922,068	T97I	probably benign	Het
Mrgpra1	A	T	7: 47,335,456	C158*	probably null	Het
Nr2e1	T	C	10: 42,582,885	T8A	probably benign	Het
Oas2	T	C	5: 120,749,773	M1V	probably null	Het
Olfr1048	T	C	2: 86,236,160	Y218C	probably damaging	Het
Olfr1132	T	A	2: 87,634,889	N286I	probably damaging	Het
Olfr307	T	A	7: 86,335,677	I240F	probably benign	Het
Olfr393	T	A	11: 73,847,871	M85L	probably benign	Het
Olfr60	T	C	7: 140,345,249	I247V	probably benign	Het
Otof	C	T	5: 30,380,194	G1257D	probably benign	Het
Phf2	T	C	13: 48,817,760	T479A	probably benign	Het
Pik3c2a	T	C	7: 116,342,997	N1516S	probably benign	Het
Qrich1	C	A	9: 108,556,037	T622K	probably damaging	Het
Rasip1	A	G	7: 45,632,519	K482R	probably damaging	Het
Rgl2	T	C	17: 33,936,944	F698L	probably benign	Het
Scarb1	T	C	5: 125,303,137	D124G	probably benign	Het
Sclt1	A	G	3: 41,671,482	I350T	probably benign	Het
Sec23ip	T	G	7: 128,767,640	V696G	probably damaging	Het
Serpina1e	G	T	12: 103,951,095	T105K	probably benign	Het
Sin3a	A	G	9: 57,113,544		probably null	Het
Slc34a2	A	G	5: 53,060,840	T154A	probably damaging	Het
Slc9a3	T	C	13: 74,155,122	L178P	probably damaging	Het
Smarca2	A	C	19: 26,682,048	I913L	probably benign	Het
Tcea3	G	A	4: 136,273,716		probably null	Het
Tmcc1	T	A	6: 116,043,474	H339L		Het
Trpm2	G	T	10: 77,947,897	H247Q	probably damaging	Het
Tyr	T	A	7: 87,472,516	D356V	probably damaging	Het
Vmn2r54	A	T	7: 12,615,961	C565S	probably damaging	Het
Vmn2r82	A	C	10: 79,377,802	N74T	probably benign	Het
Zcchc4	T	C	5: 52,815,918	Y375H	probably damaging	Het
Zfhx3	T	A	8: 108,948,721	D2134E	possibly damaging	Het
Zfhx4	T	A	3: 5,398,950	Y1414*	probably null	Het
Zfp282	A	T	6: 47,890,692	E267D	possibly damaging	Het
Zfp442	A	T	2: 150,409,176	C269S	possibly damaging	Het
Zp3	T	A	5: 135,985,564	S246T	probably benign	Het

Other mutations in Clnk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01328:Clnk	APN	5	38784528	missense	possibly damaging	0.95
IGL01348:Clnk	APN	5	38713207	missense	probably damaging	1.00
IGL01901:Clnk	APN	5	38794978	missense	probably damaging	1.00
IGL01908:Clnk	APN	5	38713142	missense	probably damaging	1.00
IGL02437:Clnk	APN	5	38774566	critical splice donor site	probably null
IGL02745:Clnk	APN	5	38736319	missense	probably benign	0.00
R0138:Clnk	UTSW	5	38774608	splice site	probably benign
R0196:Clnk	UTSW	5	38769939	missense	probably damaging	0.97
R1522:Clnk	UTSW	5	38794966	missense	probably damaging	1.00
R1958:Clnk	UTSW	5	38706626	missense	possibly damaging	0.96
R2036:Clnk	UTSW	5	38752800	splice site	probably null
R2238:Clnk	UTSW	5	38764351	splice site	probably benign
R3788:Clnk	UTSW	5	38714998	missense	probably damaging	1.00
R3931:Clnk	UTSW	5	38768069	missense	probably benign
R4159:Clnk	UTSW	5	38741795	intron	probably benign
R4182:Clnk	UTSW	5	38747850	intron	probably benign
R4686:Clnk	UTSW	5	38741837	intron	probably benign
R4751:Clnk	UTSW	5	38720913	missense	probably benign	0.06
R4842:Clnk	UTSW	5	38713069	splice site	probably null
R5811:Clnk	UTSW	5	38713147	missense	probably damaging	1.00
R6236:Clnk	UTSW	5	38713199	missense	probably benign	0.41
R7157:Clnk	UTSW	5	38769891	missense	possibly damaging	0.63
R7615:Clnk	UTSW	5	38706698	missense	probably damaging	1.00
R7618:Clnk	UTSW	5	38736355	missense	probably benign	0.06
R7762:Clnk	UTSW	5	38768141	missense	probably benign	0.24
R7768:Clnk	UTSW	5	38768158	missense	probably damaging	1.00
R7823:Clnk	UTSW	5	38750351	missense	probably benign	0.00
R8423:Clnk	UTSW	5	38794910	critical splice donor site	probably null
R8710:Clnk	UTSW	5	38774597	missense	possibly damaging	0.93
R9035:Clnk	UTSW	5	38750408	missense	possibly damaging	0.52

Predicted Primers

PCR Primer
(F):5'- TACACCCTAGCTGGCTATCC -3'
(R):5'- TTTAGCCCCAGTGGAGATGC -3'

Sequencing Primer
(F):5'- CGACTTTGTGAAGTAATCCGATGAG -3'
(R):5'- ATTACTCAAATCCGACTGGGG -3'

Posted On

2020-06-30