Mutagenetix > Incidental Mutation

Incidental Mutation 'R8170:Thnsl2'

634033

Institutional Source

Beutler Lab

Gene Symbol

Thnsl2

Ensembl Gene

ENSMUSG00000054474

Gene Name

threonine synthase-like 2 (bacterial)

Synonyms

TSH2

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R8170 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

71128166-71144439 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 71129333 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 370 (T370A)

Ref Sequence

ENSEMBL: ENSMUSP00000073861 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074241] [ENSMUST00000160918]

AlphaFold

Q80W22

Predicted Effect

probably benign
Transcript: ENSMUST00000074241
AA Change: T370A

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000073861
Gene: ENSMUSG00000054474
AA Change: T370A

Domain	Start	End	E-Value	Type
Pfam:Thr_synth_N	2	81	2.4e-27	PFAM
Pfam:PALP	93	415	9.6e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000160918
AA Change: T370A

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000124423
Gene: ENSMUSG00000054474
AA Change: T370A

Domain	Start	End	E-Value	Type
Pfam:Thr_synth_N	2	81	1.1e-27	PFAM
Pfam:PALP	94	413	8.4e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000170753

SMART Domains

Protein: ENSMUSP00000129994
Gene: ENSMUSG00000054474

Domain	Start	End	E-Value	Type
PDB:4F4F\|B	2	122	1e-11	PDB
SCOP:d1kl7a_	2	129	1e-10	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (76/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a threonine synthase-like protein. A similar enzyme in mouse can catalyze the degradation of O-phospho-homoserine to a-ketobutyrate, phosphate, and ammonia. This protein also has phospho-lyase activity on both gamma and beta phosphorylated substrates. In mouse an alternatively spliced form of this protein has been shown to act as a cytokine and can induce the production of the inflammatory cytokine IL6 in osteoblasts. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	T	C	13: 77,263,594	V595A	probably benign	Het
A430033K04Rik	A	G	5: 138,647,053	E400G	possibly damaging	Het
Abca16	C	T	7: 120,465,782	T554I	probably damaging	Het
Acadm	T	A	3: 153,944,398	R10W	possibly damaging	Het
Arhgap45	G	A	10: 80,027,872	A819T	probably damaging	Het
Arhgef25	A	G	10: 127,187,179	W120R	probably damaging	Het
Atg7	A	T	6: 114,701,190	Q347L	probably benign	Het
Atl2	T	C	17: 79,856,261	I316V	possibly damaging	Het
B4galnt3	A	T	6: 120,206,616		probably null	Het
Baiap2l1	A	T	5: 144,277,692	Y397*	probably null	Het
Cacna1b	A	G	2: 24,678,874		probably null	Het
Capn10	T	C	1: 92,934,964	S31P	probably damaging	Het
Casp8ap2	C	T	4: 32,615,490		probably benign	Het
Ccdc122	A	T	14: 77,091,878	I124L	probably benign	Het
Ccdc90b	A	G	7: 92,561,542	S3G	probably benign	Het
Cdc14b	A	T	13: 64,215,735		probably null	Het
Chd5	T	A	4: 152,376,583	M1210K	probably benign	Het
Clec18a	T	G	8: 111,080,919	K133T	probably damaging	Het
Cog4	T	A	8: 110,866,031	M413K	probably damaging	Het
Cpa5	A	T	6: 30,624,595	I145L	probably benign	Het
Ctdspl2	T	G	2: 122,006,942	S397A	probably benign	Het
Dnah8	T	A	17: 30,673,823	I794N	probably damaging	Het
Ednrb	T	A	14: 103,823,204	T218S	possibly damaging	Het
Eif3b	T	A	5: 140,426,775		probably null	Het
Fam208b	G	A	13: 3,574,881	Q1690*	probably null	Het
Fanci	A	C	7: 79,433,557		probably null	Het
Fat2	C	T	11: 55,270,455	V3150M	probably damaging	Het
Fat3	T	C	9: 15,947,496	Y3808C	probably damaging	Het
Gabrr1	T	A	4: 33,162,718	L428Q	probably damaging	Het
Garnl3	G	C	2: 33,015,223	P488R	possibly damaging	Het
Gli3	T	C	13: 15,720,208	S656P	probably benign	Het
Gm35339	C	A	15: 76,363,619	F1614L		Het
Gpr153	T	C	4: 152,280,177	I230T	probably damaging	Het
Hoxc6	A	G	15: 103,009,861	N86D	probably benign	Het
Iqch	T	G	9: 63,429,030	R985S	probably damaging	Het
Jun	T	A	4: 95,050,322	N317I	probably damaging	Het
Kif26a	T	G	12: 112,175,318		probably null	Het
Map4k3	T	C	17: 80,605,860	H627R	possibly damaging	Het
Misp	T	A	10: 79,826,466	I239N	probably benign	Het
Mpzl2	T	A	9: 45,043,721	V27E	probably damaging	Het
Mta3	T	C	17: 83,791,661	S385P	probably damaging	Het
Muc5b	G	A	7: 141,861,000	S2561N	unknown	Het
Myh8	A	G	11: 67,288,266	H495R	probably benign	Het
Nbeal1	G	C	1: 60,237,151	V684L	probably benign	Het
Nlrp5	A	T	7: 23,433,710	T927S	probably benign	Het
Nr5a2	T	A	1: 136,940,647	D310V	probably benign	Het
Nrbp1	A	G	5: 31,245,803	T207A	probably damaging	Het
Nxf1	G	T	19: 8,771,050	L14F	probably benign	Het
Olfr447	G	A	6: 42,912,191	A223T	possibly damaging	Het
Olfr777	T	A	10: 129,269,048	N92Y	possibly damaging	Het
Pcdhb15	A	G	18: 37,475,584	E623G	probably damaging	Het
Pid1	T	C	1: 84,285,000		probably null	Het
Plcb2	C	A	2: 118,711,453	R892L	possibly damaging	Het
Polr1a	C	G	6: 71,920,749	P243A	probably benign	Het
Pot1a	A	G	6: 25,758,803	*326Q	probably null	Het
Ppp5c	G	T	7: 17,007,146	F335L	probably damaging	Het
Prl8a2	T	C	13: 27,352,811	Y139H	probably benign	Het
Rogdi	G	T	16: 5,011,737	R93S	probably benign	Het
Rsph6a	C	A	7: 19,057,580	R225S	probably damaging	Het
Sept8	T	C	11: 53,537,857	S408P	possibly damaging	Het
Sf3a2	T	A	10: 80,803,297		probably null	Het
Shank3	T	C	15: 89,548,840	S1263P	possibly damaging	Het
Speer4f2	A	C	5: 17,374,461	D86A		Het
Stard9	T	C	2: 120,700,048	F2262S	possibly damaging	Het
Svep1	T	A	4: 58,069,378	I2803F	probably benign	Het
Taf1c	C	T	8: 119,602,826		probably null	Het
Tepp	A	T	8: 95,320,058	I120F	probably damaging	Het
Tfap2a	C	T	13: 40,719,268	V317I	probably benign	Het
Tmem201	C	T	4: 149,718,720	G564S	probably benign	Het
Ttc41	A	C	10: 86,776,166	E1101A	probably damaging	Het
Ugcg	T	A	4: 59,211,974	F113L	possibly damaging	Het
Unc80	G	T	1: 66,651,533	V2456L	probably benign	Het
Vav3	A	T	3: 109,424,007	N74I	probably damaging	Het
Vmn2r25	T	A	6: 123,853,017	R58S	probably benign	Het
Ylpm1	T	A	12: 85,034,027	M1499K	probably benign	Het
Zfp647	A	G	15: 76,911,371	V363A	possibly damaging	Het

Other mutations in Thnsl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00417:Thnsl2	APN	6	71131900	missense	probably damaging	1.00
IGL00814:Thnsl2	APN	6	71139883	missense	probably damaging	1.00
IGL01139:Thnsl2	APN	6	71138734	missense	probably damaging	1.00
IGL01380:Thnsl2	APN	6	71138756	missense	probably benign
IGL01511:Thnsl2	APN	6	71139793	missense	probably benign	0.04
IGL02000:Thnsl2	APN	6	71134219	missense	probably damaging	1.00
IGL03157:Thnsl2	APN	6	71131946	missense	probably benign	0.00
R0372:Thnsl2	UTSW	6	71139790	missense	probably damaging	1.00
R0380:Thnsl2	UTSW	6	71141330	missense	probably damaging	1.00
R0521:Thnsl2	UTSW	6	71134259	missense	probably damaging	1.00
R0815:Thnsl2	UTSW	6	71134224	nonsense	probably null
R0863:Thnsl2	UTSW	6	71134224	nonsense	probably null
R1300:Thnsl2	UTSW	6	71134191	missense	probably damaging	1.00
R2867:Thnsl2	UTSW	6	71131961	missense	probably damaging	1.00
R2867:Thnsl2	UTSW	6	71131961	missense	probably damaging	1.00
R4767:Thnsl2	UTSW	6	71134295	missense	probably damaging	1.00
R5578:Thnsl2	UTSW	6	71138765	missense	probably benign	0.40
R5818:Thnsl2	UTSW	6	71134143	missense	probably benign	0.01
R6627:Thnsl2	UTSW	6	71134215	missense	possibly damaging	0.70
R6800:Thnsl2	UTSW	6	71141280	missense	probably benign	0.29
R7192:Thnsl2	UTSW	6	71139755	missense	probably benign	0.02
R7391:Thnsl2	UTSW	6	71131930	missense	probably damaging	1.00
R7516:Thnsl2	UTSW	6	71132006	nonsense	probably null
R7565:Thnsl2	UTSW	6	71141327	missense	probably benign	0.00
R7980:Thnsl2	UTSW	6	71138668	missense	probably damaging	1.00
R7988:Thnsl2	UTSW	6	71141319	missense	probably benign	0.38
R8917:Thnsl2	UTSW	6	71139943	missense	probably benign
R9547:Thnsl2	UTSW	6	71139826	missense	probably damaging	1.00
R9696:Thnsl2	UTSW	6	71131946	missense	possibly damaging	0.95
X0021:Thnsl2	UTSW	6	71128704	missense	probably benign	0.02
X0066:Thnsl2	UTSW	6	71139837	nonsense	probably null
Z1177:Thnsl2	UTSW	6	71128841	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ACCACGCCTACTGATGTCAC -3'
(R):5'- ACAAATCCTTCTGCTATGTAGGCC -3'

Sequencing Primer
(F):5'- GATGTCACTATCCTTAGTCTTGCATG -3'
(R):5'- GTAGGCCCCAAACTGTAATTGTC -3'

Posted On

2020-07-13