Mutagenetix > Incidental Mutation

Incidental Mutation 'R8175:Cpsf3'

634302

Institutional Source

Beutler Lab

Gene Symbol

Cpsf3

Ensembl Gene

ENSMUSG00000054309

Gene Name

cleavage and polyadenylation specificity factor 3

Synonyms

73 kDa

MMRRC Submission

067600-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.971) question?

Stock #

R8175 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

21336274-21365057 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 21350178 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 299 (I299T)

Ref Sequence

ENSEMBL: ENSMUSP00000068148 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067284]

AlphaFold

Q9QXK7

Predicted Effect

probably benign
Transcript: ENSMUST00000067284
AA Change: I299T

PolyPhen 2 Score 0.074 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000068148
Gene: ENSMUSG00000054309
AA Change: I299T

Domain	Start	End	E-Value	Type
Lactamase_B	24	234	8.27e-12	SMART
Beta-Casp	246	367	7.32e-45	SMART
Pfam:RMMBL	380	422	9.9e-17	PFAM
CPSF73-100_C	477	683	6.78e-81	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the metallo-beta-lactamase family. The encoded protein is a 73kDa subunit of the cleavage and polyadenylation specificity factor and functions as an endonuclease that recognizes the pre-mRNA 3'-cleavage site AAUAAA prior to polyadenylation. It also cleaves after the pre-mRNA sequence ACCCA during histone 3'-end pre-mRNA processing. [provided by RefSeq, Oct 2012]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts15	C	T	9: 30,815,952 (GRCm39)	V635M	probably damaging	Het
Aim2	A	T	1: 173,282,920 (GRCm39)	M1L	possibly damaging	Het
Ank3	T	C	10: 69,729,339 (GRCm39)	V700A	unknown	Het
Arhgap10	T	C	8: 78,037,471 (GRCm39)	T586A	probably benign	Het
Arhgap45	G	A	10: 79,863,706 (GRCm39)	A819T	probably damaging	Het
Arhgef4	G	A	1: 34,849,455 (GRCm39)	V349I	probably benign	Het
Atp1a1	A	G	3: 101,492,170 (GRCm39)	F569L	possibly damaging	Het
Btbd10	T	A	7: 112,921,999 (GRCm39)		probably null	Het
Capza2	G	A	6: 17,665,381 (GRCm39)	D270N	probably benign	Het
Cobll1	T	C	2: 64,929,575 (GRCm39)	N584D	probably benign	Het
Coro1c	T	A	5: 113,988,876 (GRCm39)	I156F	probably benign	Het
Cse1l	T	A	2: 166,785,128 (GRCm39)		probably null	Het
D5Ertd579e	T	C	5: 36,772,814 (GRCm39)	E527G	probably damaging	Het
Dcbld2	T	C	16: 58,253,710 (GRCm39)	L149S	possibly damaging	Het
Ecpas	C	T	4: 58,872,756 (GRCm39)	V182M	probably damaging	Het
Egflam	C	A	15: 7,241,633 (GRCm39)	W925L	probably damaging	Het
Ehmt2	A	G	17: 35,130,396 (GRCm39)	N1071D	probably damaging	Het
Eif3g	A	T	9: 20,809,026 (GRCm39)	S93T	probably damaging	Het
Eipr1	A	G	12: 28,913,106 (GRCm39)	E269G		Het
Eng	C	A	2: 32,568,934 (GRCm39)	T487K	possibly damaging	Het
Epb41l3	T	C	17: 69,517,361 (GRCm39)	Y130H	probably damaging	Het
F5	A	T	1: 164,019,834 (GRCm39)	R770*	probably null	Het
Fam227a	A	G	15: 79,524,861 (GRCm39)	F201S	probably damaging	Het
Fam50b	G	A	13: 34,930,847 (GRCm39)	E108K	probably benign	Het
Fcgbpl1	T	A	7: 27,863,873 (GRCm39)	C2548*	probably null	Het
Fn1	A	G	1: 71,638,824 (GRCm39)	I1971T	probably damaging	Het
Fsip2	T	A	2: 82,815,088 (GRCm39)	F3607Y	probably benign	Het
Fsip2	A	T	2: 82,818,021 (GRCm39)	I4585L	probably benign	Het
Gas1	T	C	13: 60,323,932 (GRCm39)	N275S		Het
Hus1b	A	G	13: 31,131,215 (GRCm39)	V148A	probably benign	Het
Ighmbp2	A	G	19: 3,316,365 (GRCm39)	L575P	possibly damaging	Het
Igsf21	A	T	4: 139,755,542 (GRCm39)	F371Y	probably damaging	Het
Itprid2	A	G	2: 79,488,496 (GRCm39)	R860G	probably damaging	Het
Jade1	G	T	3: 41,567,723 (GRCm39)	R597L	probably benign	Het
Krt4	A	G	15: 101,828,984 (GRCm39)		probably null	Het
Lap3	T	C	5: 45,666,833 (GRCm39)	S412P	probably benign	Het
Lifr	A	G	15: 7,216,496 (GRCm39)	T824A	probably damaging	Het
Megf6	T	A	4: 154,353,076 (GRCm39)	C1307*	probably null	Het
Ndufb10	A	T	17: 24,943,166 (GRCm39)	V48E	possibly damaging	Het
Nelfa	T	C	5: 34,079,357 (GRCm39)	K72R	possibly damaging	Het
Obscn	C	T	11: 58,886,786 (GRCm39)	V7767I	unknown	Het
Pptc7	T	A	5: 122,457,882 (GRCm39)	C284S	probably benign	Het
Pxdc1	A	G	13: 34,812,798 (GRCm39)	S218P	probably damaging	Het
Rabep1	T	A	11: 70,775,755 (GRCm39)	W110R	probably damaging	Het
Ren1	T	C	1: 133,282,007 (GRCm39)	Y79H	possibly damaging	Het
Ripor3	T	C	2: 167,825,679 (GRCm39)	S760G	probably benign	Het
Setd1a	A	G	7: 127,395,415 (GRCm39)	E1327G	unknown	Het
Setd5	T	C	6: 113,091,874 (GRCm39)	W232R	probably damaging	Het
Slf1	A	T	13: 77,260,790 (GRCm39)	H171Q	probably damaging	Het
Smoc1	A	G	12: 81,214,440 (GRCm39)	D285G	probably damaging	Het
Taf10	T	C	7: 105,393,134 (GRCm39)	Y97C	probably damaging	Het
Tgfbr2	G	A	9: 115,939,023 (GRCm39)	S293L	possibly damaging	Het
Tmem181a	A	G	17: 6,346,075 (GRCm39)	I190V	probably benign	Het
Traf6	C	T	2: 101,521,825 (GRCm39)	T220I	possibly damaging	Het
Ube4b	T	C	4: 149,435,973 (GRCm39)	N716D	probably benign	Het
Unc5d	T	A	8: 29,334,855 (GRCm39)	K157N	probably damaging	Het
Usp19	G	A	9: 108,377,377 (GRCm39)	R1255H	probably damaging	Het
Vmn2r12	T	A	5: 109,238,349 (GRCm39)	I464F	probably damaging	Het
Zbtb20	A	T	16: 43,397,443 (GRCm39)		probably benign	Het
Zfp790	T	G	7: 29,529,205 (GRCm39)	L630R	possibly damaging	Het

Other mutations in Cpsf3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02039:Cpsf3	APN	12	21,351,457 (GRCm39)	missense	probably damaging	1.00
IGL02192:Cpsf3	APN	12	21,360,197 (GRCm39)	critical splice acceptor site	probably null
IGL02192:Cpsf3	APN	12	21,360,194 (GRCm39)	unclassified	probably benign
IGL02651:Cpsf3	APN	12	21,343,298 (GRCm39)	missense	probably damaging	1.00
IGL02963:Cpsf3	APN	12	21,352,423 (GRCm39)	missense	probably damaging	0.99
IGL03072:Cpsf3	APN	12	21,345,089 (GRCm39)	missense	possibly damaging	0.83
IGL03307:Cpsf3	APN	12	21,346,715 (GRCm39)	missense	possibly damaging	0.87
IGL03335:Cpsf3	APN	12	21,356,888 (GRCm39)	splice site	probably null
R0419:Cpsf3	UTSW	12	21,347,800 (GRCm39)	missense	probably damaging	1.00
R0441:Cpsf3	UTSW	12	21,350,085 (GRCm39)	missense	probably damaging	1.00
R1669:Cpsf3	UTSW	12	21,355,332 (GRCm39)	missense	probably damaging	1.00
R1797:Cpsf3	UTSW	12	21,356,851 (GRCm39)	missense	probably benign	0.01
R1801:Cpsf3	UTSW	12	21,363,791 (GRCm39)	missense	probably benign	0.01
R1860:Cpsf3	UTSW	12	21,346,733 (GRCm39)	missense	probably damaging	1.00
R3782:Cpsf3	UTSW	12	21,350,067 (GRCm39)	missense	possibly damaging	0.83
R3953:Cpsf3	UTSW	12	21,363,806 (GRCm39)	missense	probably benign
R3954:Cpsf3	UTSW	12	21,363,806 (GRCm39)	missense	probably benign
R3955:Cpsf3	UTSW	12	21,363,806 (GRCm39)	missense	probably benign
R3957:Cpsf3	UTSW	12	21,363,806 (GRCm39)	missense	probably benign
R4922:Cpsf3	UTSW	12	21,351,538 (GRCm39)	missense	probably damaging	1.00
R5112:Cpsf3	UTSW	12	21,341,785 (GRCm39)	missense	probably benign
R5363:Cpsf3	UTSW	12	21,358,986 (GRCm39)	missense	probably benign	0.00
R5507:Cpsf3	UTSW	12	21,347,929 (GRCm39)	missense	probably damaging	1.00
R6090:Cpsf3	UTSW	12	21,345,194 (GRCm39)	missense	probably damaging	0.99
R6144:Cpsf3	UTSW	12	21,356,887 (GRCm39)	splice site	probably null
R6238:Cpsf3	UTSW	12	21,350,163 (GRCm39)	missense	probably damaging	1.00
R7229:Cpsf3	UTSW	12	21,346,738 (GRCm39)	critical splice donor site	probably null
R7974:Cpsf3	UTSW	12	21,358,006 (GRCm39)	missense	probably damaging	1.00
R8914:Cpsf3	UTSW	12	21,345,112 (GRCm39)	missense	probably damaging	1.00
R9087:Cpsf3	UTSW	12	21,358,995 (GRCm39)	missense	probably damaging	1.00
R9149:Cpsf3	UTSW	12	21,356,844 (GRCm39)	missense	possibly damaging	0.64
R9301:Cpsf3	UTSW	12	21,350,112 (GRCm39)	missense	possibly damaging	0.93
R9378:Cpsf3	UTSW	12	21,358,039 (GRCm39)	missense	possibly damaging	0.95
R9476:Cpsf3	UTSW	12	21,350,080 (GRCm39)	missense	probably damaging	1.00
X0060:Cpsf3	UTSW	12	21,352,393 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TACTGTTACTGCCTGCTGAGGG -3'
(R):5'- GACTCAGGCTTTCTGCTGTG -3'

Sequencing Primer
(F):5'- AGGGACGCTTCCTCTGTGAAAC -3'
(R):5'- CTGCTGTGCACTGAGGGAATATG -3'

Posted On

2020-07-13