Mutagenetix > Incidental Mutation

Incidental Mutation 'R8187:Nr1h5'

634911

Institutional Source

Beutler Lab

Gene Symbol

Nr1h5

Ensembl Gene

ENSMUSG00000048938

Gene Name

nuclear receptor subfamily 1, group H, member 5

Synonyms

FXRB

MMRRC Submission

067610-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R8187 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

102846974-102871449 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 102861986 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 94 (H94Q)

Ref Sequence

ENSEMBL: ENSMUSP00000052557 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058899] [ENSMUST00000196135] [ENSMUST00000196983] [ENSMUST00000197412] [ENSMUST00000198472]

AlphaFold

E9Q5A6

Predicted Effect

probably benign
Transcript: ENSMUST00000058899
AA Change: H94Q

PolyPhen 2 Score 0.137 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000052557
Gene: ENSMUSG00000048938
AA Change: H94Q

Domain	Start	End	E-Value	Type
Blast:HOLI	2	47	5e-9	BLAST
ZnF_C4	119	190	2.51e-36	SMART
HOLI	289	474	1.74e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000196135

SMART Domains

Protein: ENSMUSP00000143445
Gene: ENSMUSG00000048938

Domain	Start	End	E-Value	Type
ZnF_C4	78	132	1.17e-7	SMART
HOLI	231	416	1.74e-21	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000196983
AA Change: H94Q

PolyPhen 2 Score 0.897 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000142799
Gene: ENSMUSG00000048938
AA Change: H94Q

Domain	Start	End	E-Value	Type
Blast:HOLI	2	47	5e-9	BLAST
ZnF_C4	119	190	2.51e-36	SMART
HOLI	289	466	1.76e-22	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000197412
AA Change: H94Q

PolyPhen 2 Score 0.861 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000143764
Gene: ENSMUSG00000048938
AA Change: H94Q

Domain	Start	End	E-Value	Type
Blast:HOLI	2	47	4e-9	BLAST
ZnF_C4	119	190	1e-38	SMART
Pfam:Hormone_recep	274	362	6e-6	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000198472
AA Change: H94Q

PolyPhen 2 Score 0.897 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000142345
Gene: ENSMUSG00000048938
AA Change: H94Q

Domain	Start	End	E-Value	Type
Blast:HOLI	2	47	4e-9	BLAST
ZnF_C4	119	190	1e-38	SMART
Pfam:Hormone_recep	273	367	5.8e-6	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

100% (57/57)

Allele List at MGI

All alleles(1) : Targeted(1)

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110009E18Rik	A	T	1: 120,115,913 (GRCm39)	*122L	probably null	Het
4930438A08Rik	A	G	11: 58,180,548 (GRCm39)	S200G		Het
Adgre1	T	A	17: 57,727,349 (GRCm39)	S426R	probably benign	Het
Adgrg1	A	G	8: 95,732,446 (GRCm39)	E229G	probably benign	Het
Arhgap45	G	A	10: 79,863,706 (GRCm39)	A819T	probably damaging	Het
Arhgef39	A	T	4: 43,498,999 (GRCm39)	L84Q	probably damaging	Het
Bpifb9a	A	G	2: 154,111,377 (GRCm39)	I544V	probably benign	Het
Brwd1	A	T	16: 95,803,934 (GRCm39)	L2079I	probably damaging	Het
Ccnh	T	A	13: 85,337,656 (GRCm39)	M1K	probably null	Het
Cdh16	T	C	8: 105,344,870 (GRCm39)	N415S	probably damaging	Het
Chuk	T	C	19: 44,079,551 (GRCm39)	N317D	probably benign	Het
Cnot10	A	T	9: 114,426,556 (GRCm39)	C665*	probably null	Het
Csmd1	G	T	8: 16,177,188 (GRCm39)	H1358Q	probably damaging	Het
Cyp4f37	T	C	17: 32,854,171 (GRCm39)	V540A	probably benign	Het
Daam1	A	G	12: 71,942,602 (GRCm39)	D22G	unknown	Het
Dhdds	A	G	4: 133,727,679 (GRCm39)		probably benign	Het
Dnah5	T	C	15: 28,384,355 (GRCm39)	V3033A	probably damaging	Het
Dync1i2	A	G	2: 71,044,865 (GRCm39)	K25R	probably benign	Het
Efhc1	T	A	1: 21,030,396 (GRCm39)	S110T	probably damaging	Het
Emilin3	T	C	2: 160,750,000 (GRCm39)	N583S	possibly damaging	Het
Eri2	A	G	7: 119,384,767 (GRCm39)	V578A	probably damaging	Het
F2rl2	A	T	13: 95,837,911 (GRCm39)	I319L	probably benign	Het
Gjd3	A	C	11: 102,691,381 (GRCm39)	Y207*	probably null	Het
Gm19965	T	A	1: 116,749,532 (GRCm39)	C404*	probably null	Het
Gm2832	A	T	14: 41,000,915 (GRCm39)	H51L		Het
Gpam	T	C	19: 55,066,269 (GRCm39)	T631A	probably benign	Het
Hdac2	T	C	10: 36,864,132 (GRCm39)	S114P	probably damaging	Het
Hsd3b1	T	A	3: 98,759,933 (GRCm39)	T353S	probably damaging	Het
Idh1	T	C	1: 65,198,700 (GRCm39)	D390G	probably damaging	Het
Il36g	T	G	2: 24,082,617 (GRCm39)	L131V	probably damaging	Het
Irs1	G	T	1: 82,266,021 (GRCm39)	P732T	probably damaging	Het
Kansl1l	T	A	1: 66,840,896 (GRCm39)	I135F	possibly damaging	Het
Mcc	A	G	18: 44,667,327 (GRCm39)	V208A	possibly damaging	Het
Mgrn1	A	G	16: 4,738,229 (GRCm39)	N261S	probably benign	Het
Mybpc2	T	A	7: 44,161,894 (GRCm39)	N519Y	possibly damaging	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Nsmce4a	A	G	7: 130,144,519 (GRCm39)	V128A	probably benign	Het
Or5w14	T	G	2: 87,541,624 (GRCm39)	S209R	probably benign	Het
Or6y1	TTGTGTG	TTGTG	1: 174,276,838 (GRCm39)		probably null	Het
Osmr	T	A	15: 6,850,485 (GRCm39)	Y707F	probably damaging	Het
Pck1	G	T	2: 172,997,033 (GRCm39)	R225L	probably benign	Het
Prom1	A	T	5: 44,191,708 (GRCm39)	L354Q	probably damaging	Het
Rev3l	C	A	10: 39,682,693 (GRCm39)	Q300K	probably benign	Het
Rin3	T	A	12: 102,292,066 (GRCm39)	C88S	unknown	Het
Slc37a4	T	C	9: 44,311,291 (GRCm39)	V194A	possibly damaging	Het
Smpd4	T	A	16: 17,446,999 (GRCm39)	H242Q	probably damaging	Het
Spen	T	C	4: 141,200,216 (GRCm39)	I2804V	possibly damaging	Het
Srrm4	A	C	5: 116,587,680 (GRCm39)	F359L	unknown	Het
Svs5	A	G	2: 164,079,692 (GRCm39)	Y72H	possibly damaging	Het
Tmem158	T	A	9: 123,088,875 (GRCm39)	T246S	unknown	Het
Ttn	A	G	2: 76,633,735 (GRCm39)	V14038A	probably benign	Het
Ttn	A	G	2: 76,559,790 (GRCm39)	I29537T	probably damaging	Het
Ttn	A	G	2: 76,626,069 (GRCm39)	S14997P	probably damaging	Het
Vmn1r231	A	T	17: 21,110,893 (GRCm39)	D7E	probably benign	Het
Vmn2r14	A	G	5: 109,368,420 (GRCm39)	S191P	probably benign	Het
Zfp599	G	T	9: 22,161,111 (GRCm39)	Y351*	probably null	Het
Zfp729a	T	A	13: 67,769,918 (GRCm39)	K104*	probably null	Het

Other mutations in Nr1h5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01829:Nr1h5	APN	3	102,856,395 (GRCm39)	missense	probably benign	0.02
IGL02021:Nr1h5	APN	3	102,855,058 (GRCm39)	intron	probably benign
IGL02025:Nr1h5	APN	3	102,856,942 (GRCm39)	splice site	probably benign
IGL02094:Nr1h5	APN	3	102,859,512 (GRCm39)	nonsense	probably null
R0035:Nr1h5	UTSW	3	102,856,889 (GRCm39)	nonsense	probably null
R0035:Nr1h5	UTSW	3	102,856,889 (GRCm39)	nonsense	probably null
R1200:Nr1h5	UTSW	3	102,855,178 (GRCm39)	missense	probably damaging	1.00
R1977:Nr1h5	UTSW	3	102,855,133 (GRCm39)	missense	probably damaging	1.00
R4173:Nr1h5	UTSW	3	102,859,546 (GRCm39)	missense	probably damaging	1.00
R4556:Nr1h5	UTSW	3	102,853,457 (GRCm39)	missense	probably benign	0.28
R5018:Nr1h5	UTSW	3	102,855,111 (GRCm39)	missense	probably damaging	1.00
R5471:Nr1h5	UTSW	3	102,856,442 (GRCm39)	missense	possibly damaging	0.74
R5617:Nr1h5	UTSW	3	102,855,145 (GRCm39)	missense	probably damaging	1.00
R5822:Nr1h5	UTSW	3	102,856,644 (GRCm39)	missense	probably damaging	1.00
R6243:Nr1h5	UTSW	3	102,856,380 (GRCm39)	missense	probably benign	0.00
R6442:Nr1h5	UTSW	3	102,848,427 (GRCm39)	missense	probably damaging	1.00
R6754:Nr1h5	UTSW	3	102,856,913 (GRCm39)	missense	probably damaging	1.00
R6789:Nr1h5	UTSW	3	102,865,677 (GRCm39)	missense	possibly damaging	0.81
R7235:Nr1h5	UTSW	3	102,856,358 (GRCm39)	critical splice donor site	probably null
R7294:Nr1h5	UTSW	3	102,852,578 (GRCm39)	missense	probably benign	0.00
R7756:Nr1h5	UTSW	3	102,856,925 (GRCm39)	missense	probably benign	0.00
R7882:Nr1h5	UTSW	3	102,856,931 (GRCm39)	missense	possibly damaging	0.80
R8738:Nr1h5	UTSW	3	102,862,015 (GRCm39)	missense	probably benign
R9051:Nr1h5	UTSW	3	102,853,427 (GRCm39)	missense	probably null	0.00
R9549:Nr1h5	UTSW	3	102,848,337 (GRCm39)	missense	probably benign	0.00
X0061:Nr1h5	UTSW	3	102,852,564 (GRCm39)	splice site	probably null
X0067:Nr1h5	UTSW	3	102,856,442 (GRCm39)	missense	possibly damaging	0.74

Predicted Primers

PCR Primer
(F):5'- TCACACAGATTGATCCCTTTAGAC -3'
(R):5'- TTCCAAGAACCACCCTATTGTC -3'

Sequencing Primer
(F):5'- GTTTTATAACGATTGCACACGC -3'
(R):5'- GAACCACCCTATTGTCAATATTCTAC -3'

Posted On

2020-07-13