Incidental Mutation 'R8189:Mtrex'
| ID |
635041 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Mtrex
|
| Ensembl Gene |
ENSMUSG00000016018 |
| Gene Name |
Mtr4 exosome RNA helicase |
| Synonyms |
Skiv2l2, 2610528A15Rik |
| MMRRC Submission |
067612-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.963)
|
| Stock # |
R8189 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
113004306-113063914 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 113028515 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Serine
at position 628
(R628S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000022281
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022281]
|
| AlphaFold |
Q9CZU3 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000022281
AA Change: R628S
PolyPhen 2
Score 0.535 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000022281
Gene: ENSMUSG00000016018
AA Change: R628S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
37 |
N/A |
INTRINSIC |
|
DEXDc
|
134 |
317 |
6.42e-34 |
SMART |
|
HELICc
|
437 |
526 |
3.14e-19 |
SMART |
|
Pfam:rRNA_proc-arch
|
580 |
839 |
1.7e-91 |
PFAM |
|
DSHCT
|
863 |
1040 |
1.69e-96 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.8%
|
| Validation Efficiency |
100% (42/42) |
| Allele List at MGI |
All alleles(16) : Targeted(2) Gene trapped(14)
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca12 |
A |
G |
1: 71,324,885 (GRCm39) |
I1531T |
probably damaging |
Het |
| Ankrd13d |
G |
A |
19: 4,320,880 (GRCm39) |
P516S |
probably benign |
Het |
| Bag6 |
A |
G |
17: 35,364,214 (GRCm39) |
|
probably null |
Het |
| Cchcr1 |
A |
G |
17: 35,837,563 (GRCm39) |
I422V |
probably benign |
Het |
| Ceacam1 |
A |
G |
7: 25,173,343 (GRCm39) |
S282P |
probably damaging |
Het |
| Chka |
G |
T |
19: 3,925,759 (GRCm39) |
E159* |
probably null |
Het |
| Ckmt2 |
T |
C |
13: 92,003,894 (GRCm39) |
Y368C |
probably damaging |
Het |
| Cngb1 |
TTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGG |
TTCTGGCTCTGGCTCTGGCTCTGG |
8: 96,030,248 (GRCm39) |
|
probably benign |
Het |
| Ctsq |
A |
G |
13: 61,184,969 (GRCm39) |
L239P |
probably damaging |
Het |
| D630045J12Rik |
A |
G |
6: 38,135,106 (GRCm39) |
L1358P |
probably damaging |
Het |
| Dglucy |
G |
A |
12: 100,804,889 (GRCm39) |
E127K |
probably benign |
Het |
| Dnajb8 |
C |
T |
6: 88,199,940 (GRCm39) |
R159C |
possibly damaging |
Het |
| Fgd6 |
T |
C |
10: 93,910,077 (GRCm39) |
L794P |
probably benign |
Het |
| Fgfr2 |
G |
A |
7: 129,774,629 (GRCm39) |
T654I |
probably damaging |
Het |
| Gmeb2 |
G |
A |
2: 180,919,760 (GRCm39) |
T38M |
probably damaging |
Het |
| Gria1 |
T |
C |
11: 57,108,625 (GRCm39) |
F243L |
probably benign |
Het |
| Gria2 |
A |
T |
3: 80,629,489 (GRCm39) |
D244E |
probably damaging |
Het |
| Ints2 |
T |
A |
11: 86,106,396 (GRCm39) |
I1005F |
probably damaging |
Het |
| Ipo11 |
T |
A |
13: 107,061,604 (GRCm39) |
S19C |
probably damaging |
Het |
| Kmt2b |
A |
G |
7: 30,268,756 (GRCm39) |
F2658L |
probably damaging |
Het |
| Lrrc38 |
G |
A |
4: 143,077,303 (GRCm39) |
G189R |
probably damaging |
Het |
| Mcf2l |
A |
G |
8: 13,013,164 (GRCm39) |
D27G |
probably damaging |
Het |
| Mrgprb2 |
G |
T |
7: 48,202,502 (GRCm39) |
Y74* |
probably null |
Het |
| Nrcam |
C |
A |
12: 44,617,291 (GRCm39) |
P740T |
possibly damaging |
Het |
| Nrxn1 |
C |
T |
17: 91,011,637 (GRCm39) |
V331I |
probably damaging |
Het |
| Or2a57 |
T |
C |
6: 43,213,013 (GRCm39) |
V157A |
probably benign |
Het |
| Or4f17-ps1 |
T |
C |
2: 111,358,118 (GRCm39) |
V153A |
|
Het |
| Or5k1b |
T |
A |
16: 58,581,288 (GRCm39) |
N84Y |
probably damaging |
Het |
| Or5p52 |
A |
G |
7: 107,501,939 (GRCm39) |
N5S |
probably damaging |
Het |
| Or6c66b |
T |
A |
10: 129,377,122 (GRCm39) |
C239S |
probably damaging |
Het |
| Pla2g4a |
A |
G |
1: 149,733,337 (GRCm39) |
F479L |
probably benign |
Het |
| Pramel20 |
T |
G |
4: 143,298,530 (GRCm39) |
Y158D |
probably benign |
Het |
| Scaper |
A |
T |
9: 55,819,404 (GRCm39) |
F104I |
probably damaging |
Het |
| Serpinb3c |
A |
T |
1: 107,204,039 (GRCm39) |
C58S |
probably benign |
Het |
| Setdb1 |
A |
G |
3: 95,254,022 (GRCm39) |
V260A |
probably damaging |
Het |
| Shank3 |
A |
G |
15: 89,433,439 (GRCm39) |
T1395A |
probably benign |
Het |
| Slc35b4 |
A |
G |
6: 34,144,570 (GRCm39) |
I95T |
probably damaging |
Het |
| Trpm5 |
A |
G |
7: 142,635,575 (GRCm39) |
V599A |
probably benign |
Het |
| Ttk |
A |
G |
9: 83,729,272 (GRCm39) |
S352G |
probably benign |
Het |
| Ugt2b35 |
T |
A |
5: 87,149,302 (GRCm39) |
S184R |
probably damaging |
Het |
| Usp17le |
C |
T |
7: 104,418,555 (GRCm39) |
D196N |
probably damaging |
Het |
| Vmn2r15 |
A |
G |
5: 109,434,713 (GRCm39) |
F664L |
probably benign |
Het |
| Vmn2r94 |
A |
T |
17: 18,478,618 (GRCm39) |
L43Q |
probably damaging |
Het |
|
| Other mutations in Mtrex |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01077:Mtrex
|
APN |
13 |
113,051,023 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01772:Mtrex
|
APN |
13 |
113,027,859 (GRCm39) |
missense |
probably benign |
0.10 |
|
IGL01843:Mtrex
|
APN |
13 |
113,055,095 (GRCm39) |
splice site |
probably benign |
|
|
IGL01972:Mtrex
|
APN |
13 |
113,017,595 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02451:Mtrex
|
APN |
13 |
113,027,881 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02716:Mtrex
|
APN |
13 |
113,019,680 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL03234:Mtrex
|
APN |
13 |
113,017,509 (GRCm39) |
splice site |
probably benign |
|
|
K3955:Mtrex
|
UTSW |
13 |
113,047,513 (GRCm39) |
nonsense |
probably null |
|
|
P0038:Mtrex
|
UTSW |
13 |
113,047,513 (GRCm39) |
nonsense |
probably null |
|
|
R0067:Mtrex
|
UTSW |
13 |
113,023,396 (GRCm39) |
missense |
probably benign |
0.34 |
|
R0067:Mtrex
|
UTSW |
13 |
113,023,396 (GRCm39) |
missense |
probably benign |
0.34 |
|
R0086:Mtrex
|
UTSW |
13 |
113,063,862 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0687:Mtrex
|
UTSW |
13 |
113,050,895 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1216:Mtrex
|
UTSW |
13 |
113,050,876 (GRCm39) |
splice site |
probably benign |
|
|
R1218:Mtrex
|
UTSW |
13 |
113,054,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1312:Mtrex
|
UTSW |
13 |
113,019,785 (GRCm39) |
nonsense |
probably null |
|
|
R1827:Mtrex
|
UTSW |
13 |
113,049,633 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1852:Mtrex
|
UTSW |
13 |
113,009,461 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1889:Mtrex
|
UTSW |
13 |
113,024,024 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2205:Mtrex
|
UTSW |
13 |
113,035,424 (GRCm39) |
missense |
probably benign |
0.06 |
|
R2256:Mtrex
|
UTSW |
13 |
113,013,046 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2394:Mtrex
|
UTSW |
13 |
113,019,702 (GRCm39) |
missense |
probably benign |
0.02 |
|
R3717:Mtrex
|
UTSW |
13 |
113,032,129 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3779:Mtrex
|
UTSW |
13 |
113,039,926 (GRCm39) |
splice site |
probably benign |
|
|
R4613:Mtrex
|
UTSW |
13 |
113,058,273 (GRCm39) |
nonsense |
probably null |
|
|
R4939:Mtrex
|
UTSW |
13 |
113,046,426 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R5452:Mtrex
|
UTSW |
13 |
113,049,715 (GRCm39) |
missense |
probably null |
0.96 |
|
R5591:Mtrex
|
UTSW |
13 |
113,063,890 (GRCm39) |
start codon destroyed |
probably null |
0.88 |
|
R5688:Mtrex
|
UTSW |
13 |
113,009,590 (GRCm39) |
nonsense |
probably null |
|
|
R5761:Mtrex
|
UTSW |
13 |
113,054,196 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5789:Mtrex
|
UTSW |
13 |
113,027,819 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5851:Mtrex
|
UTSW |
13 |
113,045,486 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6038:Mtrex
|
UTSW |
13 |
113,027,824 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6038:Mtrex
|
UTSW |
13 |
113,027,824 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6348:Mtrex
|
UTSW |
13 |
113,047,451 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R7276:Mtrex
|
UTSW |
13 |
113,050,973 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7397:Mtrex
|
UTSW |
13 |
113,058,220 (GRCm39) |
missense |
probably benign |
|
|
R7792:Mtrex
|
UTSW |
13 |
113,009,443 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7863:Mtrex
|
UTSW |
13 |
113,045,435 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7948:Mtrex
|
UTSW |
13 |
113,058,296 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8035:Mtrex
|
UTSW |
13 |
113,035,336 (GRCm39) |
missense |
probably benign |
0.09 |
|
R8124:Mtrex
|
UTSW |
13 |
113,063,871 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8152:Mtrex
|
UTSW |
13 |
113,009,517 (GRCm39) |
nonsense |
probably null |
|
|
R8880:Mtrex
|
UTSW |
13 |
113,051,034 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9228:Mtrex
|
UTSW |
13 |
113,050,888 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9281:Mtrex
|
UTSW |
13 |
113,046,443 (GRCm39) |
nonsense |
probably null |
|
|
R9679:Mtrex
|
UTSW |
13 |
113,032,055 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGAAACGACGGGTCTTGGG -3'
(R):5'- TTTCAGTAGCTGGCTTGGACC -3'
Sequencing Primer
(F):5'- TGGTCACCTCCTGTAGCAG -3'
(R):5'- CTTGGACCTGTAGATTCACAGGAG -3'
|
| Posted On |
2020-07-13 |
Incidental Mutation