Mutagenetix > Incidental Mutation

Incidental Mutation 'R8192:Mkrn1'

635212

Institutional Source

Beutler Lab

Gene Symbol

Mkrn1

Ensembl Gene

ENSMUSG00000029922

Gene Name

makorin, ring finger protein, 1

Synonyms

MMRRC Submission

067615-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8192 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

39374738-39397396 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 39376289 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 439 (V439D)

Ref Sequence

ENSEMBL: ENSMUSP00000031985 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031985] [ENSMUST00000051671] [ENSMUST00000114823]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000031985
AA Change: V439D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000031985
Gene: ENSMUSG00000029922
AA Change: V439D

Domain	Start	End	E-Value	Type
low complexity region	2	30	N/A	INTRINSIC
low complexity region	35	54	N/A	INTRINSIC
ZnF_C3H1	55	81	3.86e-7	SMART
ZnF_C3H1	85	110	8.27e-7	SMART
low complexity region	122	142	N/A	INTRINSIC
ZnF_C3H1	208	234	1.13e-4	SMART
RING	281	334	2.09e-7	SMART
low complexity region	349	363	N/A	INTRINSIC
ZnF_C3H1	366	392	2.53e-2	SMART
Pfam:MKRN1_C	400	479	9.1e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000051671

SMART Domains

Protein: ENSMUSP00000084244
Gene: ENSMUSG00000029922

Domain	Start	End	E-Value	Type
low complexity region	2	30	N/A	INTRINSIC
low complexity region	35	54	N/A	INTRINSIC
ZnF_C3H1	55	81	3.86e-7	SMART
ZnF_C3H1	85	110	8.27e-7	SMART
low complexity region	122	142	N/A	INTRINSIC
ZnF_C3H1	208	234	1.13e-4	SMART
RING	281	328	4.72e-2	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000114823
AA Change: V375D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000110471
Gene: ENSMUSG00000029922
AA Change: V375D

Domain	Start	End	E-Value	Type
ZnF_C3H1	1	17	6.26e1	SMART
ZnF_C3H1	21	46	8.27e-7	SMART
low complexity region	58	78	N/A	INTRINSIC
ZnF_C3H1	144	170	1.13e-4	SMART
RING	217	270	2.09e-7	SMART
low complexity region	285	299	N/A	INTRINSIC
ZnF_C3H1	302	328	2.53e-2	SMART
low complexity region	378	395	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000122996

SMART Domains

Protein: ENSMUSP00000115231
Gene: ENSMUSG00000029922

Domain	Start	End	E-Value	Type
low complexity region	1	15	N/A	INTRINSIC
ZnF_C3H1	75	96	4.11e-2	SMART
ZnF_C3H1	100	125	8.27e-7	SMART
low complexity region	137	157	N/A	INTRINSIC
ZnF_C3H1	223	249	1.13e-4	SMART
RING	296	343	4.72e-2	SMART

Predicted Effect

SMART Domains

Protein: ENSMUSP00000121563
Gene: ENSMUSG00000029922
AA Change: S187T

Domain	Start	End	E-Value	Type
RING	52	105	2.09e-7	SMART
low complexity region	170	191	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

100% (64/64)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to a novel class of zinc finger proteins. The encoded protein functions as a transcriptional co-regulator, and as an E3 ubiquitin ligase that promotes the ubiquitination and proteasomal degradation of target proteins. The protein encoded by this gene is thought to regulate RNA polymerase II-catalyzed transcription. Substrates for this protein's E3 ubiquitin ligase activity include the capsid protein of the West Nile virus and the catalytic subunit of the telomerase ribonucleoprotein. This protein controls cell cycle arrest and apoptosis by regulating p21, a cell cycle regulator, and the tumor suppressor protein p53. Pseudogenes of this gene are present on chromosomes 1, 3, 9, 12 and 20, and on the X chromosome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2014]
PHENOTYPE: Mice homozygous for a gene-trapped allele are viable and fertile, and show normal kidney morphology, eyelid development, and skeletal morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam34	A	T	8: 44,103,970 (GRCm39)	D558E	probably damaging	Het
Alox15	T	A	11: 70,241,736 (GRCm39)	E48D	probably benign	Het
Alyref	T	C	11: 120,488,522 (GRCm39)	E102G	probably benign	Het
Bach2	A	G	4: 32,562,294 (GRCm39)	S254G	probably benign	Het
Bcl2l13	A	G	6: 120,853,267 (GRCm39)	E184G	possibly damaging	Het
Best1	T	A	19: 9,963,664 (GRCm39)	I506F	possibly damaging	Het
Cd177	T	A	7: 24,453,727 (GRCm39)	D388V	probably benign	Het
Cep350	T	C	1: 155,816,529 (GRCm39)	K329E	possibly damaging	Het
Clasrp	T	C	7: 19,329,387 (GRCm39)	N65S	possibly damaging	Het
Cobl	T	C	11: 12,199,745 (GRCm39)	R1301G	probably benign	Het
Cul9	T	C	17: 46,849,273 (GRCm39)	E624G	probably benign	Het
Cyp21a1	A	T	17: 35,022,633 (GRCm39)	Y109N	probably damaging	Het
Dbf4	A	G	5: 8,448,134 (GRCm39)	S359P	probably benign	Het
Ddx60	A	G	8: 62,431,002 (GRCm39)	T846A	probably damaging	Het
Dnah11	A	G	12: 117,976,181 (GRCm39)	V2746A	probably benign	Het
Dnah12	G	A	14: 26,428,036 (GRCm39)	A221T	probably benign	Het
Dnajb8	C	T	6: 88,199,940 (GRCm39)	R159C	possibly damaging	Het
Dock2	A	G	11: 34,623,166 (GRCm39)		probably null	Het
Dpy19l1	T	C	9: 24,362,023 (GRCm39)	I119V	possibly damaging	Het
Dsg1c	A	G	18: 20,399,255 (GRCm39)	T120A	probably damaging	Het
Dzank1	T	C	2: 144,332,145 (GRCm39)	H397R	probably benign	Het
Gaa	G	T	11: 119,161,235 (GRCm39)	A93S	possibly damaging	Het
Galnt4	G	A	10: 98,945,118 (GRCm39)	R281H	probably benign	Het
Gm3250	T	C	10: 77,618,291 (GRCm39)	E29G	unknown	Het
H13	T	G	2: 152,511,522 (GRCm39)	D7E	probably benign	Het
H60c	T	A	10: 3,209,781 (GRCm39)	I140F	probably benign	Het
Hsd3b2	T	C	3: 98,620,908 (GRCm39)	N49S	probably benign	Het
Klhl11	G	T	11: 100,354,922 (GRCm39)	P300T	probably benign	Het
Knop1	C	A	7: 118,452,369 (GRCm39)	V117L		Het
Lgalsl2	T	A	7: 5,362,595 (GRCm39)	D75E	possibly damaging	Het
Lrrc38	G	A	4: 143,077,303 (GRCm39)	G189R	probably damaging	Het
Lrrc9	A	T	12: 72,496,163 (GRCm39)	I13F	probably damaging	Het
Macf1	A	G	4: 123,334,390 (GRCm39)	S4456P	probably damaging	Het
Muc2	T	A	7: 141,305,215 (GRCm39)	V612D		Het
Nrxn3	A	G	12: 90,171,569 (GRCm39)	N967D	probably benign	Het
Oprm1	C	T	10: 6,788,417 (GRCm39)	P391S	probably benign	Het
Or10g7	T	A	9: 39,905,467 (GRCm39)	D120E	probably damaging	Het
Or5d43	A	C	2: 88,105,288 (GRCm39)	V35G	probably damaging	Het
Parp14	T	A	16: 35,691,584 (GRCm39)	E47V	probably benign	Het
Pikfyve	A	G	1: 65,285,554 (GRCm39)	E931G	possibly damaging	Het
Plcz1	A	T	6: 139,968,986 (GRCm39)	C151S	probably damaging	Het
Pramel20	T	G	4: 143,298,530 (GRCm39)	Y158D	probably benign	Het
Pramel27	G	A	4: 143,578,109 (GRCm39)	W123*	probably null	Het
Rbm26	A	G	14: 105,380,125 (GRCm39)		probably null	Het
Rffl	G	T	11: 82,703,549 (GRCm39)		probably null	Het
Sc5d	T	C	9: 42,171,094 (GRCm39)	I32V	probably benign	Het
Scube1	A	G	15: 83,513,583 (GRCm39)		probably null	Het
Shld2	A	T	14: 33,967,173 (GRCm39)	S680T	probably benign	Het
Slc12a6	A	G	2: 112,181,722 (GRCm39)	Y714C	probably damaging	Het
Slc26a3	A	G	12: 31,518,541 (GRCm39)	I670V	probably benign	Het
Slc8a3	A	T	12: 81,246,455 (GRCm39)	V866D	probably damaging	Het
Slco3a1	A	T	7: 73,970,338 (GRCm39)	M423K	probably benign	Het
Smc6	A	G	12: 11,349,336 (GRCm39)	E773G	probably benign	Het
Son	A	G	16: 91,452,437 (GRCm39)	T395A	possibly damaging	Het
Ss18l1	T	C	2: 179,701,155 (GRCm39)	S290P	probably damaging	Het
Tcof1	A	C	18: 60,976,375 (GRCm39)	V78G	probably damaging	Het
Thsd1	G	A	8: 22,733,918 (GRCm39)	V322M	probably benign	Het
Tln2	A	T	9: 67,253,811 (GRCm39)	C753*	probably null	Het
Trav6n-6	T	A	14: 53,370,497 (GRCm39)	F83I	probably damaging	Het
Ttc39d	A	G	17: 80,524,007 (GRCm39)	H222R	probably damaging	Het
Ugt2b35	T	A	5: 87,149,302 (GRCm39)	S184R	probably damaging	Het
Upf1	A	G	8: 70,793,294 (GRCm39)	L288P	probably benign	Het
Zfp442	T	C	2: 150,250,629 (GRCm39)	I424M	unknown	Het
Zfp580	T	C	7: 5,056,114 (GRCm39)	V100A	probably benign	Het
Zfpm1	C	A	8: 123,058,833 (GRCm39)	P151Q	probably damaging	Het
Zfr2	C	T	10: 81,078,649 (GRCm39)	P294S	possibly damaging	Het

Other mutations in Mkrn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01921:Mkrn1	APN	6	39,382,847 (GRCm39)	missense	possibly damaging	0.80
IGL03235:Mkrn1	APN	6	39,378,264 (GRCm39)	missense	probably damaging	1.00
R0127:Mkrn1	UTSW	6	39,376,209 (GRCm39)	missense	probably benign	0.19
R0445:Mkrn1	UTSW	6	39,381,788 (GRCm39)	missense	probably benign	0.28
R1109:Mkrn1	UTSW	6	39,376,268 (GRCm39)	missense	probably damaging	1.00
R1366:Mkrn1	UTSW	6	39,382,851 (GRCm39)	missense	probably benign	0.02
R1783:Mkrn1	UTSW	6	39,377,390 (GRCm39)	missense	probably null
R2002:Mkrn1	UTSW	6	39,382,737 (GRCm39)	missense	probably benign	0.00
R4671:Mkrn1	UTSW	6	39,382,691 (GRCm39)	missense	probably damaging	1.00
R4889:Mkrn1	UTSW	6	39,396,939 (GRCm39)	unclassified	probably benign
R7948:Mkrn1	UTSW	6	39,377,344 (GRCm39)	missense	probably benign	0.17
R8099:Mkrn1	UTSW	6	39,387,031 (GRCm39)	missense	probably benign	0.40
R8759:Mkrn1	UTSW	6	39,376,344 (GRCm39)	nonsense	probably null
R9223:Mkrn1	UTSW	6	39,378,183 (GRCm39)	missense	possibly damaging	0.91
R9260:Mkrn1	UTSW	6	39,382,530 (GRCm39)	unclassified	probably benign
R9554:Mkrn1	UTSW	6	39,376,838 (GRCm39)	missense	probably benign	0.06
RF016:Mkrn1	UTSW	6	39,396,925 (GRCm39)	missense
Z1088:Mkrn1	UTSW	6	39,377,390 (GRCm39)	missense	probably null
Z1176:Mkrn1	UTSW	6	39,377,390 (GRCm39)	missense	probably null
Z1177:Mkrn1	UTSW	6	39,377,390 (GRCm39)	missense	probably null

Predicted Primers

PCR Primer
(F):5'- ACAGCTACTGTCTGAGGCTC -3'
(R):5'- AGCCCTAGCCTAACATGTTGG -3'

Sequencing Primer
(F):5'- TACTGTCTGAGGCTCCGCAG -3'
(R):5'- GCCTAACATGTTGGCTACAAATAG -3'

Posted On

2020-07-13