Mutagenetix > Incidental Mutation

Incidental Mutation 'R8195:Trim65'

635415

Institutional Source

Beutler Lab

Gene Symbol

Trim65

Ensembl Gene

ENSMUSG00000054517

Gene Name

tripartite motif-containing 65

Synonyms

4732463G12Rik

MMRRC Submission

067618-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8195 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

116012672-116021954 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 116017037 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 475 (Q475R)

Ref Sequence

ENSEMBL: ENSMUSP00000063410 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067632] [ENSMUST00000106440]

AlphaFold

Q8BFW4

Predicted Effect

probably benign
Transcript: ENSMUST00000067632
AA Change: Q475R

PolyPhen 2 Score 0.040 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000063410
Gene: ENSMUSG00000054517
AA Change: Q475R

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	3e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART
Pfam:SPRY	386	505	1.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106440

SMART Domains

Protein: ENSMUSP00000102048
Gene: ENSMUSG00000054517

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	2e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART

Meta Mutation Damage Score

0.1087

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.2%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	G	A	11: 9,224,735 (GRCm39)	G483R	probably benign	Het
Abca9	T	C	11: 110,029,155 (GRCm39)	D801G	probably benign	Het
Aldob	T	C	4: 49,538,822 (GRCm39)	N232S	probably damaging	Het
Ankhd1	T	C	18: 36,787,230 (GRCm39)	V322A		Het
Arfgef1	T	C	1: 10,243,478 (GRCm39)	K1024E	probably damaging	Het
Arhgef40	T	A	14: 52,226,226 (GRCm39)	V90E	probably damaging	Het
Cblc	A	T	7: 19,519,262 (GRCm39)	S399R	possibly damaging	Het
Ccdc17	T	A	4: 116,456,211 (GRCm39)	I368K	possibly damaging	Het
Ccdc17	T	A	4: 116,456,213 (GRCm39)	W369R	probably damaging	Het
Cd276	G	A	9: 58,444,755 (GRCm39)	T72I	probably damaging	Het
Cdk14	C	T	5: 5,277,159 (GRCm39)		probably null	Het
Cfap61	C	T	2: 145,789,095 (GRCm39)	S33L	probably benign	Het
Cmtm2a	A	G	8: 105,019,670 (GRCm39)	F7L	probably benign	Het
Eif2ak4	T	C	2: 118,280,819 (GRCm39)	I1062T	possibly damaging	Het
Fcnb	C	T	2: 27,968,330 (GRCm39)	S209N	possibly damaging	Het
Fxr1	A	T	3: 34,101,878 (GRCm39)	E204V	probably damaging	Het
Fzd6	T	A	15: 38,894,959 (GRCm39)	L375Q	probably damaging	Het
Ggta1	T	A	2: 35,312,279 (GRCm39)	E33V	probably damaging	Het
Gnb1l	T	A	16: 18,362,965 (GRCm39)	I119N	probably benign	Het
Gpsm1	A	G	2: 26,214,929 (GRCm39)		probably null	Het
Hecw1	A	G	13: 14,480,692 (GRCm39)	I885T	probably damaging	Het
Itgb8	T	C	12: 119,131,905 (GRCm39)	D580G	probably damaging	Het
Kbtbd12	T	A	6: 88,594,913 (GRCm39)	T306S	possibly damaging	Het
Kctd1	C	T	18: 15,196,300 (GRCm39)	E108K	unknown	Het
Lrrc36	A	G	8: 106,178,717 (GRCm39)	D304G	possibly damaging	Het
Lrrn2	A	G	1: 132,865,082 (GRCm39)	E49G	probably damaging	Het
Lysmd2	C	A	9: 75,533,310 (GRCm39)	Y88*	probably null	Het
Lzts3	A	G	2: 130,477,105 (GRCm39)	S448P	probably benign	Het
Meioc	T	A	11: 102,565,893 (GRCm39)	L447*	probably null	Het
Mybpc1	A	G	10: 88,394,553 (GRCm39)	I244T	possibly damaging	Het
Necab3	G	A	2: 154,389,363 (GRCm39)	A160V	probably benign	Het
Nek8	G	T	11: 78,061,587 (GRCm39)	P314Q	possibly damaging	Het
Nlrp5	A	G	7: 23,112,762 (GRCm39)	T140A	probably benign	Het
Or10p21	T	C	10: 128,847,444 (GRCm39)	C97R	probably damaging	Het
Or52ac1	A	T	7: 104,246,133 (GRCm39)	F85Y	probably damaging	Het
Or7e169	A	T	9: 19,757,780 (GRCm39)	I45N	probably damaging	Het
Or8b54	G	A	9: 38,686,577 (GRCm39)	V9M	noncoding transcript	Het
Pgm3	G	A	9: 86,452,374 (GRCm39)	R29W	probably damaging	Het
Ppp2r3d	A	G	9: 101,090,231 (GRCm39)	C31R	probably damaging	Het
Prom1	C	T	5: 44,194,770 (GRCm39)	S334N	possibly damaging	Het
Rai14	C	T	15: 10,575,302 (GRCm39)	S581N	probably benign	Het
Rbm46	C	T	3: 82,772,775 (GRCm39)	R119Q	probably benign	Het
Rgs16	T	C	1: 153,616,689 (GRCm39)	F42S	probably benign	Het
Slc2a6	T	G	2: 26,917,838 (GRCm39)	E27A	probably benign	Het
Slc38a1	G	A	15: 96,490,447 (GRCm39)	S110L	probably benign	Het
Sox30	C	T	11: 45,882,592 (GRCm39)	R541C	probably benign	Het
Sptbn4	C	A	7: 27,108,314 (GRCm39)	E703*	probably null	Het
Tjp1	A	T	7: 64,993,470 (GRCm39)	F34L	probably damaging	Het
Ttc38	A	T	15: 85,728,716 (GRCm39)	R223*	probably null	Het
Tulp1	T	C	17: 28,583,300 (GRCm39)	Q80R	probably benign	Het
Utp23	T	C	15: 51,745,598 (GRCm39)	F139L	possibly damaging	Het
Vmn1r121	A	T	7: 20,832,228 (GRCm39)	F71I	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Zdbf2	T	C	1: 63,343,225 (GRCm39)	S535P	possibly damaging	Het
Zfp788	T	G	7: 41,298,801 (GRCm39)	M479R	probably benign	Het

Other mutations in Trim65

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01420:Trim65	APN	11	116,017,335 (GRCm39)	missense	probably damaging	1.00
PIT4531001:Trim65	UTSW	11	116,018,535 (GRCm39)	missense	possibly damaging	0.85
R0105:Trim65	UTSW	11	116,016,892 (GRCm39)	makesense	probably null
R0126:Trim65	UTSW	11	116,015,430 (GRCm39)	splice site	probably benign
R0268:Trim65	UTSW	11	116,017,470 (GRCm39)	splice site	probably benign
R0647:Trim65	UTSW	11	116,019,036 (GRCm39)	missense	possibly damaging	0.92
R2234:Trim65	UTSW	11	116,021,503 (GRCm39)	missense	possibly damaging	0.91
R2235:Trim65	UTSW	11	116,021,503 (GRCm39)	missense	possibly damaging	0.91
R4011:Trim65	UTSW	11	116,018,529 (GRCm39)	missense	probably benign	0.00
R4086:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4088:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4089:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4434:Trim65	UTSW	11	116,018,435 (GRCm39)	nonsense	probably null
R5407:Trim65	UTSW	11	116,016,906 (GRCm39)	missense	probably benign
R5947:Trim65	UTSW	11	116,019,108 (GRCm39)	missense	probably damaging	0.99
R6299:Trim65	UTSW	11	116,017,377 (GRCm39)	missense	probably benign	0.00
R7248:Trim65	UTSW	11	116,018,534 (GRCm39)	missense	probably benign	0.01
R7336:Trim65	UTSW	11	116,019,116 (GRCm39)	missense	probably benign	0.00
R7496:Trim65	UTSW	11	116,017,142 (GRCm39)	missense	probably damaging	1.00
R7835:Trim65	UTSW	11	116,021,755 (GRCm39)	missense	probably damaging	1.00
R7849:Trim65	UTSW	11	116,017,082 (GRCm39)	missense	probably damaging	0.99
R8143:Trim65	UTSW	11	116,017,287 (GRCm39)	missense	probably benign	0.09
R8783:Trim65	UTSW	11	116,017,143 (GRCm39)	missense	probably damaging	1.00
R9158:Trim65	UTSW	11	116,018,050 (GRCm39)	missense	probably benign	0.01
R9740:Trim65	UTSW	11	116,021,434 (GRCm39)	missense	probably benign	0.26
R9751:Trim65	UTSW	11	116,021,564 (GRCm39)	missense	probably benign	0.01
X0061:Trim65	UTSW	11	116,017,397 (GRCm39)	missense	probably benign	0.39
X0066:Trim65	UTSW	11	116,021,672 (GRCm39)	missense	probably benign	0.25

Predicted Primers

PCR Primer
(F):5'- CCTTCTAGAAGCTAGAGGTGGG -3'
(R):5'- CTATCACGCCAAAAGCTGGG -3'

Sequencing Primer
(F):5'- CTAGAGGTGGGGCCACTTTTG -3'
(R):5'- GGGACCCACACGGATAACATCG -3'

Posted On

2020-07-13