Mutagenetix > Incidental Mutation

Incidental Mutation 'R8213:Syt14'

636235

Institutional Source

Beutler Lab

Gene Symbol

Syt14

Ensembl Gene

ENSMUSG00000016200

Gene Name

synaptotagmin XIV

Synonyms

B230320I09Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8213 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

192891233-193035775 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 192986829 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 39 (M39V)

Ref Sequence

ENSEMBL: ENSMUSP00000016344 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016344] [ENSMUST00000195354] [ENSMUST00000195530]

AlphaFold

Q7TN84

Predicted Effect

probably benign
Transcript: ENSMUST00000016344
AA Change: M39V

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000016344
Gene: ENSMUSG00000016200
AA Change: M39V

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC
low complexity region	81	94	N/A	INTRINSIC
C2	276	378	1.41e0	SMART
C2	431	547	1.38e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195354
AA Change: M39V

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000142190
Gene: ENSMUSG00000016200
AA Change: M39V

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC
low complexity region	81	94	N/A	INTRINSIC
C2	276	378	1.41e0	SMART
C2	431	547	1.38e-9	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000195530
AA Change: M39V

PolyPhen 2 Score 0.798 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000141563
Gene: ENSMUSG00000016200
AA Change: M39V

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC

Meta Mutation Damage Score

0.0799

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.4%
20x: 98.1%

Validation Efficiency

98% (65/66)

MGI Phenotype

FUNCTION: This gene encodes a member of the synaptotagmin family. The encoded protein may be involved in membrane trafficking. Disruption of a similar gene in human has been associated with autosomal recessive spinocerebellar ataxia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A1bg	T	C	15: 60,919,756	Y277C	probably damaging	Het
Acss1	T	A	2: 150,619,710	D651V	possibly damaging	Het
Aktip	G	T	8: 91,124,866	P243H	possibly damaging	Het
Arl11	T	G	14: 61,311,265	S175A	probably benign	Het
Aup1	A	G	6: 83,054,607		probably benign	Het
Avil	A	T	10: 127,008,321	I250F	probably damaging	Het
Btnl6	A	T	17: 34,508,883		probably null	Het
C77080	A	T	4: 129,221,459	V1070D	possibly damaging	Het
Ccdc7b	C	A	8: 129,178,291	Q137K	probably benign	Het
Cdk11b	G	A	4: 155,639,881	E319K	unknown	Het
Chka	A	C	19: 3,885,882	E196A	probably damaging	Het
Depdc5	C	T	5: 32,937,637	R753C	probably damaging	Het
Dhx57	T	A	17: 80,275,156	D340V	possibly damaging	Het
Dicer1	A	T	12: 104,702,693	D1243E	probably benign	Het
Dnajb9	A	T	12: 44,207,133	L164M	probably benign	Het
Dock6	A	G	9: 21,831,444	V785A	possibly damaging	Het
Efcab5	T	C	11: 77,116,071	Y909C	probably damaging	Het
Erp44	A	T	4: 48,208,783	S226T	probably benign	Het
Fgd6	A	T	10: 94,044,052	D256V	probably benign	Het
Fhl5	A	T	4: 25,207,113	Y218*	probably null	Het
Filip1	C	A	9: 79,818,092	A1082S	probably benign	Het
Gm13088	T	A	4: 143,654,185	M423L	probably benign	Het
Gm13128	A	T	4: 144,330,460	D71V	probably benign	Het
Heatr5a	G	A	12: 51,891,443	T1484M	probably damaging	Het
Herc1	G	T	9: 66,450,888	R2417L	probably damaging	Het
Hnrnpr	A	G	4: 136,317,175		probably benign	Het
Igsf5	A	T	16: 96,372,988	I73F	probably damaging	Het
Il17ra	T	C	6: 120,473,034	V91A	probably benign	Het
Inpp5f	A	G	7: 128,679,805	D510G	probably damaging	Het
Kbtbd3	A	G	9: 4,331,269	K548E	probably damaging	Het
Kdm5d	T	A	Y: 941,515	C1239S	probably damaging	Het
Mamdc4	G	A	2: 25,566,356	T709M	probably benign	Het
Mybbp1a	T	A	11: 72,444,721	Y353N	probably damaging	Het
Nepn	A	T	10: 52,391,759	E40D	probably benign	Het
Npat	G	T	9: 53,570,570	E1193*	probably null	Het
Nrde2	G	A	12: 100,131,003	S846L	probably benign	Het
Nup205	T	C	6: 35,225,203	V1290A	probably benign	Het
Olfr1009	T	A	2: 85,721,501	L32Q	probably null	Het
Olfr1424	A	G	19: 12,059,092	V220A	probably benign	Het
Olfr517	C	A	7: 108,868,519	V212L	probably benign	Het
Pde6a	A	T	18: 61,220,696	K31M	possibly damaging	Het
Pms2	C	T	5: 143,914,771	R169C	probably damaging	Het
Polr2g	A	T	19: 8,798,257	L30Q	probably damaging	Het
Prdm15	T	A	16: 97,807,060	H679L	probably damaging	Het
Prl4a1	T	G	13: 28,023,386	Y214*	probably null	Het
Prlr	C	T	15: 10,329,242	T601M	possibly damaging	Het
Psen2	A	C	1: 180,245,691	S22A	probably benign	Het
Ralgapa1	C	A	12: 55,722,914	R764L	probably damaging	Het
Scgb2b11	T	C	7: 32,209,408	E89G	probably damaging	Het
Serpina10	T	C	12: 103,628,277	I228V	probably benign	Het
Serpinb1a	T	A	13: 32,842,999	H320L	probably damaging	Het
Sesn2	C	A	4: 132,498,053	Q267H	possibly damaging	Het
Sgsm1	A	T	5: 113,251,011	W1019R	probably damaging	Het
Sqle	A	G	15: 59,321,302		probably null	Het
Tgm7	A	G	2: 121,101,064	V206A	probably damaging	Het
Thbs4	T	C	13: 92,760,586		probably null	Het
Trpv1	T	C	11: 73,254,251	F721S	probably damaging	Het
Ttll10	A	T	4: 156,036,234	M433K	probably benign	Het
Vmn1r216	T	C	13: 23,099,525	I126T	probably benign	Het
Vmn2r108	G	A	17: 20,470,088	S494F	probably benign	Het
Vwa3b	C	T	1: 37,128,939	A603V	probably benign	Het
Xirp2	T	A	2: 67,476,866	N19K	probably damaging	Het
Zfp397	T	A	18: 23,960,722	N421K	probably damaging	Het
Zscan5b	C	T	7: 6,233,947	P232S	possibly damaging	Het

Other mutations in Syt14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00584:Syt14	APN	1	192930484	missense	possibly damaging	0.88
IGL01535:Syt14	APN	1	192986765	missense	probably damaging	1.00
IGL01935:Syt14	APN	1	192933371	missense	probably damaging	0.99
IGL02531:Syt14	APN	1	192901934	makesense	probably null
IGL02716:Syt14	APN	1	192980535	missense	possibly damaging	0.92
IGL03051:Syt14	APN	1	192933220	missense	probably benign	0.19
IGL03268:Syt14	APN	1	192986834	missense	probably benign	0.25
crumpled	UTSW	1	192901869	missense	possibly damaging	0.82
R0542:Syt14	UTSW	1	192930803	missense	probably damaging	1.00
R0598:Syt14	UTSW	1	192897314	missense	probably damaging	1.00
R1533:Syt14	UTSW	1	192930776	missense	possibly damaging	0.94
R1675:Syt14	UTSW	1	192897482	missense	probably damaging	1.00
R1907:Syt14	UTSW	1	192901835	missense	probably damaging	1.00
R3032:Syt14	UTSW	1	192986751	missense	possibly damaging	0.86
R3828:Syt14	UTSW	1	192901775	missense	probably damaging	1.00
R3965:Syt14	UTSW	1	192901867	missense	probably benign	0.04
R4646:Syt14	UTSW	1	192933325	missense	probably damaging	1.00
R4730:Syt14	UTSW	1	192930786	missense	probably damaging	1.00
R4909:Syt14	UTSW	1	192898859	missense	probably damaging	1.00
R4970:Syt14	UTSW	1	192930977	intron	probably benign
R5039:Syt14	UTSW	1	193026984	missense	probably damaging	1.00
R5363:Syt14	UTSW	1	192930663	missense	possibly damaging	0.94
R5593:Syt14	UTSW	1	192930923	missense	probably damaging	1.00
R5980:Syt14	UTSW	1	192980408	missense	possibly damaging	0.89
R6014:Syt14	UTSW	1	192930695	missense	probably damaging	0.99
R6221:Syt14	UTSW	1	192930600	missense	probably damaging	1.00
R6547:Syt14	UTSW	1	192901869	missense	possibly damaging	0.82
R6804:Syt14	UTSW	1	192901853	missense	probably damaging	1.00
R7038:Syt14	UTSW	1	192983658	intron	probably benign
R7179:Syt14	UTSW	1	192933263	missense	probably damaging	1.00
R7196:Syt14	UTSW	1	193035628	missense	probably benign	0.01
R7311:Syt14	UTSW	1	192980550	missense	probably benign
R7577:Syt14	UTSW	1	192983577	missense	unknown
R7769:Syt14	UTSW	1	192984324	missense	unknown
R7779:Syt14	UTSW	1	192984443	missense	unknown
R8888:Syt14	UTSW	1	192897558	missense	probably damaging	1.00
R8939:Syt14	UTSW	1	192930588	missense	probably damaging	1.00
R8960:Syt14	UTSW	1	192984207	intron	probably benign
R9109:Syt14	UTSW	1	192930636	nonsense	probably null
R9117:Syt14	UTSW	1	192983818	missense	unknown
R9127:Syt14	UTSW	1	192901823	missense	probably damaging	0.98
R9213:Syt14	UTSW	1	192930506	missense	probably damaging	0.97
R9298:Syt14	UTSW	1	192930636	nonsense	probably null
R9741:Syt14	UTSW	1	192984141	missense	unknown
Z1176:Syt14	UTSW	1	192933198	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CCAGGCTATTTCTCTTAATGCAGTATC -3'
(R):5'- CACTTTGTGGGGTTTCTTACAAAC -3'

Sequencing Primer
(F):5'- AAAGTTGGCCTTCTCATAGCAC -3'
(R):5'- GCGTATACTGGGAAATTCCT -3'

Posted On

2020-07-13