Mutagenetix > Incidental Mutation

Incidental Mutation 'R8222:Stx6'

636741

Institutional Source

Beutler Lab

Gene Symbol

Stx6

Ensembl Gene

ENSMUSG00000026470

Gene Name

syntaxin 6

Synonyms

2310039E05Rik, 2410005I16Rik

MMRRC Submission

067640-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.142) question?

Stock #

R8222 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

155034374-155083405 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 155073889 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 233 (D233G)

Ref Sequence

ENSEMBL: ENSMUSP00000142089 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027743] [ENSMUST00000193059] [ENSMUST00000195302]

AlphaFold

Q9JKK1

Predicted Effect

probably benign
Transcript: ENSMUST00000027743

SMART Domains

Protein: ENSMUSP00000027743
Gene: ENSMUSG00000026470

Domain	Start	End	E-Value	Type
Pfam:Syntaxin-6_N	5	103	1.9e-41	PFAM
t_SNARE	158	225	3.77e-15	SMART
transmembrane domain	235	254	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000192690

Predicted Effect

probably benign
Transcript: ENSMUST00000193059

SMART Domains

Protein: ENSMUSP00000141976
Gene: ENSMUSG00000026470

Domain	Start	End	E-Value	Type
Pfam:Syntaxin-6_N	5	103	4.2e-32	PFAM
low complexity region	156	175	N/A	INTRINSIC
Blast:t_SNARE	176	199	5e-7	BLAST
PDB:2NPS\|D	176	199	4e-8	PDB

Predicted Effect

possibly damaging
Transcript: ENSMUST00000195302
AA Change: D233G

PolyPhen 2 Score 0.937 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000142089
Gene: ENSMUSG00000026470
AA Change: D233G

Domain	Start	End	E-Value	Type
Pfam:Syntaxin-6_N	5	103	5.1e-35	PFAM
t_SNARE	158	225	3.77e-15	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.9%
10x: 99.5%
20x: 98.6%

Validation Efficiency

100% (56/56)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh18a1	C	T	19: 40,562,296 (GRCm39)	V243I	probably benign	Het
Ankrd11	A	T	8: 123,622,347 (GRCm39)	S481T	probably damaging	Het
Atg2b	A	G	12: 105,618,475 (GRCm39)	I859T	possibly damaging	Het
B4galt3	G	A	1: 171,100,253 (GRCm39)	R141Q	possibly damaging	Het
Bace1	T	C	9: 45,768,491 (GRCm39)	V262A	probably damaging	Het
BC106179	A	T	16: 23,043,055 (GRCm39)	I47N	noncoding transcript	Het
Brpf1	C	T	6: 113,286,999 (GRCm39)	P76S	probably benign	Het
Cdk1	A	G	10: 69,176,426 (GRCm39)	V227A	probably benign	Het
Ceacam20	T	C	7: 19,705,618 (GRCm39)	V203A	probably benign	Het
Cfap251	T	A	5: 123,440,486 (GRCm39)	Y1091N	probably damaging	Het
Cma2	T	C	14: 56,210,727 (GRCm39)	V194A	probably benign	Het
Cnnm4	A	G	1: 36,545,617 (GRCm39)	D749G	probably benign	Het
Cyp11b2	T	C	15: 74,728,059 (GRCm39)	T8A	probably benign	Het
Dlk2	A	G	17: 46,613,384 (GRCm39)	H170R	probably benign	Het
Esyt1	C	T	10: 128,347,647 (GRCm39)	R987Q	possibly damaging	Het
Ganc	T	C	2: 120,276,933 (GRCm39)	I665T	probably damaging	Het
Gas6	T	C	8: 13,520,276 (GRCm39)	T471A	probably benign	Het
Grik2	A	G	10: 49,449,744 (GRCm39)	F153L	probably benign	Het
Heatr5b	A	G	17: 79,109,130 (GRCm39)	V1043A	possibly damaging	Het
Ipo5	A	G	14: 121,157,414 (GRCm39)	D84G	probably benign	Het
Irak4	T	A	15: 94,459,110 (GRCm39)		probably null	Het
Lrp4	T	A	2: 91,305,086 (GRCm39)	C238S	probably damaging	Het
Mau2	A	T	8: 70,485,827 (GRCm39)		probably null	Het
Mdn1	T	C	4: 32,707,477 (GRCm39)	F1589L	probably benign	Het
Mlxip	T	G	5: 123,585,596 (GRCm39)	S662A	probably benign	Het
Mn1	A	T	5: 111,566,546 (GRCm39)	N172I	probably damaging	Het
Mup2	A	C	4: 60,138,454 (GRCm39)	D79E	probably benign	Het
Nab2	C	A	10: 127,498,645 (GRCm39)	V475L	probably benign	Het
Nlrp3	A	G	11: 59,439,614 (GRCm39)	E397G	probably damaging	Het
Odf2l	A	G	3: 144,833,799 (GRCm39)	E153G	probably damaging	Het
Or13p10	T	C	4: 118,523,113 (GRCm39)	L133P	probably damaging	Het
Or51f5	G	T	7: 102,424,099 (GRCm39)	D123Y	probably damaging	Het
Or5d36	T	A	2: 87,901,381 (GRCm39)	Y115F	probably benign	Het
Or5l13	T	C	2: 87,779,788 (GRCm39)	N263S	probably benign	Het
Pkdrej	T	A	15: 85,701,640 (GRCm39)	H1432L	probably benign	Het
Plec	C	T	15: 76,063,374 (GRCm39)	R2232H	possibly damaging	Het
Polk	T	C	13: 96,632,023 (GRCm39)	M317V	possibly damaging	Het
Ppp4r3a	A	G	12: 101,008,164 (GRCm39)	S758P	probably benign	Het
Pramel26	A	T	4: 143,536,893 (GRCm39)	D479E	possibly damaging	Het
Prdm9	A	G	17: 15,765,035 (GRCm39)	S582P	possibly damaging	Het
R3hcc1l	T	A	19: 42,564,616 (GRCm39)	L643H	probably damaging	Het
Rassf8	G	A	6: 145,765,783 (GRCm39)	V38M	unknown	Het
Reln	G	A	5: 22,136,475 (GRCm39)	Q2518*	probably null	Het
Sel1l3	A	G	5: 53,345,296 (GRCm39)		probably null	Het
Serpina3m	A	T	12: 104,358,960 (GRCm39)	D324V	possibly damaging	Het
Slc12a6	T	A	2: 112,169,870 (GRCm39)		probably null	Het
Slc25a3	A	G	10: 90,954,053 (GRCm39)	W219R	probably damaging	Het
Sort1	T	A	3: 108,241,951 (GRCm39)	V299E	probably benign	Het
Tefm	A	G	11: 80,031,230 (GRCm39)	V2A		Het
Tfdp2	T	C	9: 96,192,666 (GRCm39)	S190P	possibly damaging	Het
Tmprss7	A	T	16: 45,478,461 (GRCm39)	I755N	probably damaging	Het
Trpm8	A	G	1: 88,253,390 (GRCm39)		probably null	Het
Ube2q2l	A	G	6: 136,377,882 (GRCm39)	I316T	probably damaging	Het
Ugt2a2	A	G	5: 87,608,369 (GRCm39)	L490P	probably damaging	Het
Utp20	A	G	10: 88,614,234 (GRCm39)	L1240P	probably damaging	Het
Vmn1r159	G	T	7: 22,542,608 (GRCm39)	Y141*	probably null	Het
Vmn2r56	T	A	7: 12,444,960 (GRCm39)	Y431F	probably benign	Het

Other mutations in Stx6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00465:Stx6	APN	1	155,077,679 (GRCm39)	unclassified	probably benign
IGL01414:Stx6	APN	1	155,077,691 (GRCm39)	missense	possibly damaging	0.85
IGL02376:Stx6	APN	1	155,077,725 (GRCm39)	missense	probably benign	0.39
IGL02415:Stx6	APN	1	155,069,059 (GRCm39)	missense	possibly damaging	0.68
R0276:Stx6	UTSW	1	155,049,909 (GRCm39)	splice site	probably benign
R0709:Stx6	UTSW	1	155,069,040 (GRCm39)	missense	probably damaging	1.00
R1218:Stx6	UTSW	1	155,077,737 (GRCm39)	missense	probably benign	0.39
R1484:Stx6	UTSW	1	155,053,650 (GRCm39)	missense	probably benign	0.05
R2366:Stx6	UTSW	1	155,077,706 (GRCm39)	missense	probably benign	0.39
R2389:Stx6	UTSW	1	155,073,164 (GRCm39)	missense	possibly damaging	0.96
R3125:Stx6	UTSW	1	155,034,654 (GRCm39)	missense	probably damaging	0.99
R4924:Stx6	UTSW	1	155,049,737 (GRCm39)	missense	probably damaging	1.00
R5642:Stx6	UTSW	1	155,073,925 (GRCm39)	missense	probably benign	0.00
R7369:Stx6	UTSW	1	155,073,130 (GRCm39)	nonsense	probably null
R9214:Stx6	UTSW	1	155,067,210 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AACACTTGCTGCTTTCTGTGAAC -3'
(R):5'- TCAGCCCTCCATGTCAGATG -3'

Sequencing Primer
(F):5'- GGGAAAATACCTACTTCTTCAGACTG -3'
(R):5'- TCCATGTCAGATGCACCTG -3'

Posted On

2020-07-13