Incidental Mutation 'R8278:Nyap1'
ID638062
Institutional Source Beutler Lab
Gene Symbol Nyap1
Ensembl Gene ENSMUSG00000045348
Gene Nameneuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
Synonyms6430598A04Rik, Nyap1
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.134) question?
Stock #R8278 (G1)
Quality Score225.009
Status Not validated
Chromosome5
Chromosomal Location137729899-137741607 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to T at 137731815 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Histidine at position 790 (R790H)
Ref Sequence ENSEMBL: ENSMUSP00000113397 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000061789] [ENSMUST00000118326] [ENSMUST00000149512] [ENSMUST00000212152]
Predicted Effect probably damaging
Transcript: ENSMUST00000061789
AA Change: R790H

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000058217
Gene: ENSMUSG00000045348
AA Change: R790H

DomainStartEndE-ValueType
Pfam:NYAP_N 15 411 1.5e-127 PFAM
low complexity region 431 452 N/A INTRINSIC
Pfam:NYAP_C 528 833 1.7e-180 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000118326
AA Change: R790H

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000113397
Gene: ENSMUSG00000045348
AA Change: R790H

DomainStartEndE-ValueType
Pfam:NYAP_N 15 411 1.5e-127 PFAM
low complexity region 431 452 N/A INTRINSIC
Pfam:NYAP_C 528 833 1.7e-180 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000149512
SMART Domains Protein: ENSMUSP00000114694
Gene: ENSMUSG00000045348

DomainStartEndE-ValueType
Pfam:NYAP_N 15 411 7.1e-128 PFAM
low complexity region 431 452 N/A INTRINSIC
Pfam:NYAP_C 528 771 1.9e-121 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000212152
AA Change: R789H

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.5%
Validation Efficiency
MGI Phenotype PHENOTYPE: Triple KO of Nyap1, Nyap2 and Myo16 results in decreased brain weight and cortex and striatum size and reduced neurite length in cortical neurons. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2610301B20Rik T A 4: 10,882,474 probably null Het
4930562C15Rik A T 16: 4,850,176 Q477L probably benign Het
Adcy10 A T 1: 165,503,288 D40V probably damaging Het
Cab39l T C 14: 59,539,113 Y248H probably damaging Het
Casr G T 16: 36,515,649 D99E probably damaging Het
Cdh16 T C 8: 104,618,475 E364G probably benign Het
Cep104 C T 4: 153,983,665 T189I possibly damaging Het
Chd7 T A 4: 8,862,485 probably null Het
Chit1 G A 1: 134,150,594 R380Q probably benign Het
Cpne2 A G 8: 94,554,688 K174R probably damaging Het
Dchs2 T A 3: 83,271,003 I1121N probably damaging Het
Fgf6 A T 6: 127,015,818 Y78F probably damaging Het
H2-T10 A T 17: 36,118,940 N320K probably benign Het
Heatr3 A T 8: 88,156,733 N398I possibly damaging Het
Hrh4 T C 18: 13,007,227 S60P probably damaging Het
Ikbip A G 10: 91,096,328 H278R probably benign Het
Jmy A T 13: 93,464,716 I394N probably damaging Het
Klhl8 T C 5: 103,874,241 E314G probably benign Het
Lhx9 A T 1: 138,838,586 C164S probably damaging Het
Loxl3 G T 6: 83,048,716 G352C probably damaging Het
Lrrk1 A G 7: 66,278,684 F1232S probably benign Het
Mpnd A G 17: 56,012,469 T311A probably benign Het
Mpp7 A T 18: 7,444,025 D132E probably benign Het
Nck2 T C 1: 43,554,580 S316P probably damaging Het
Nckap5 T C 1: 126,027,772 S348G probably damaging Het
Olfr1489 C T 19: 13,633,594 T161I possibly damaging Het
Park2 A T 17: 12,050,722 N421Y probably benign Het
Pdcd11 G A 19: 47,106,297 V507I probably damaging Het
Pdzd2 T C 15: 12,375,909 H1380R probably benign Het
Pgap1 C T 1: 54,490,271 V763I probably benign Het
Pnmal2 G T 7: 16,946,338 V416L probably damaging Het
Prpf4 T C 4: 62,415,256 probably null Het
Psmb5 C T 14: 54,617,885 G36D probably benign Het
Ptprq A G 10: 107,686,378 S571P possibly damaging Het
Rap1gap A C 4: 137,717,437 S254R probably damaging Het
Rufy2 A T 10: 63,007,693 D492V probably benign Het
Ryr2 C A 13: 11,595,506 E4145* probably null Het
Sgsm1 A G 5: 113,260,092 F898L probably damaging Het
Slc26a9 C A 1: 131,761,776 A487D possibly damaging Het
Slc6a15 T C 10: 103,394,029 probably null Het
Smad9 A T 3: 54,789,266 T251S probably benign Het
Socs3 A T 11: 117,967,652 C193* probably null Het
Sox6 T A 7: 115,476,964 D813V probably damaging Het
Taf2 A T 15: 55,065,965 L65* probably null Het
Taf6 G A 5: 138,179,835 A468V probably benign Het
Tmem71 T C 15: 66,555,112 D78G probably damaging Het
Tob2 T C 15: 81,851,087 N227S probably benign Het
Trim34a C A 7: 104,249,416 Q180K probably damaging Het
Ugt1a9 T C 1: 88,071,656 L276P possibly damaging Het
Wdr33 G A 18: 31,827,352 R23Q possibly damaging Het
Wnt7b T G 15: 85,543,686 N189H Het
Zfp609 G A 9: 65,697,522 A1308V possibly damaging Het
Other mutations in Nyap1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01095:Nyap1 APN 5 137738084 missense probably damaging 1.00
IGL02211:Nyap1 APN 5 137739675 missense probably damaging 0.99
IGL02658:Nyap1 APN 5 137735484 missense probably damaging 0.99
IGL03493:Nyap1 APN 5 137735016 missense probably damaging 1.00
R0180:Nyap1 UTSW 5 137738021 missense probably damaging 1.00
R0731:Nyap1 UTSW 5 137735298 missense probably damaging 1.00
R1215:Nyap1 UTSW 5 137735133 nonsense probably null
R1741:Nyap1 UTSW 5 137733125 missense probably damaging 1.00
R1953:Nyap1 UTSW 5 137735032 missense probably benign 0.01
R2006:Nyap1 UTSW 5 137735691 missense possibly damaging 0.81
R2131:Nyap1 UTSW 5 137733681 intron probably null
R2244:Nyap1 UTSW 5 137735314 missense probably damaging 1.00
R4581:Nyap1 UTSW 5 137736022 missense probably damaging 1.00
R4857:Nyap1 UTSW 5 137735578 missense probably damaging 0.98
R5151:Nyap1 UTSW 5 137736114 missense probably damaging 0.99
R5533:Nyap1 UTSW 5 137735464 missense probably benign 0.15
R5695:Nyap1 UTSW 5 137734984 missense probably damaging 1.00
R7201:Nyap1 UTSW 5 137736262 missense probably damaging 1.00
R7210:Nyap1 UTSW 5 137737982 missense probably damaging 1.00
R7374:Nyap1 UTSW 5 137735529 missense probably damaging 1.00
R7434:Nyap1 UTSW 5 137736268 missense probably damaging 1.00
R7658:Nyap1 UTSW 5 137732974 missense probably benign
R7870:Nyap1 UTSW 5 137735396 nonsense probably null
R7913:Nyap1 UTSW 5 137734969 missense probably damaging 1.00
R8422:Nyap1 UTSW 5 137735821 missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CCATCTCTCAAGCCTCAAGG -3'
(R):5'- ATTGGTTTGGTCACAAGGTCC -3'

Sequencing Primer
(F):5'- TCTCAAGCCTCAAGGAGACCTAGG -3'
(R):5'- TTGGTCACAAGGTCCTTGAC -3'
Posted On2020-07-28