Mutagenetix > Incidental Mutation

Incidental Mutation 'R8282:Larp1b'

638238

Institutional Source

Beutler Lab

Gene Symbol

Larp1b

Ensembl Gene

ENSMUSG00000025762

Gene Name

La ribonucleoprotein 1B

Synonyms

4933421B21Rik, Larp2, 1700108L22Rik

MMRRC Submission

067705-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8282 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

40904263-40994669 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 40991245 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 193 (R193H)

Ref Sequence

ENSEMBL: ENSMUSP00000096721 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026862] [ENSMUST00000099121]

AlphaFold

F6U5V1

Predicted Effect

possibly damaging
Transcript: ENSMUST00000026862
AA Change: R47H

PolyPhen 2 Score 0.820 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000026862
Gene: ENSMUSG00000025762
AA Change: R47H

Domain	Start	End	E-Value	Type
low complexity region	75	85	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000099121
AA Change: R193H

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000096721
Gene: ENSMUSG00000025762
AA Change: R193H

Domain	Start	End	E-Value	Type
low complexity region	8	21	N/A	INTRINSIC
DM15	52	93	6.61e-18	SMART
DM15	94	132	5.75e-18	SMART
DM15	133	167	2.82e-1	SMART
low complexity region	221	231	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

98% (57/58)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy10	T	A	1: 165,337,906 (GRCm39)	D173E	probably benign	Het
Ahctf1	T	C	1: 179,605,371 (GRCm39)	D721G	possibly damaging	Het
Allc	T	C	12: 28,607,356 (GRCm39)	T299A	probably damaging	Het
Ankrd55	T	A	13: 112,459,575 (GRCm39)		probably benign	Het
Axl	C	T	7: 25,463,379 (GRCm39)	D633N	probably benign	Het
Brf2	G	T	8: 27,614,621 (GRCm39)	R30S		Het
Bsn	A	G	9: 107,984,890 (GRCm39)	S283P	possibly damaging	Het
Ccng2	C	G	5: 93,421,202 (GRCm39)	S237R	probably benign	Het
Ces1d	A	T	8: 93,912,740 (GRCm39)	S233T	possibly damaging	Het
Chst15	T	A	7: 131,871,879 (GRCm39)	H134L	probably benign	Het
Col14a1	A	G	15: 55,284,276 (GRCm39)	T846A	unknown	Het
Cwh43	A	T	5: 73,591,572 (GRCm39)	D555V	probably damaging	Het
Cyld	C	A	8: 89,432,043 (GRCm39)	P14T	probably benign	Het
Dctn1	G	A	6: 83,176,738 (GRCm39)	R1264H	possibly damaging	Het
Dkk3	T	A	7: 111,717,489 (GRCm39)	S327C	probably damaging	Het
Dnmbp	T	G	19: 43,879,005 (GRCm39)	H22P	unknown	Het
Duxf4	T	G	10: 58,072,148 (GRCm39)	Q22P	possibly damaging	Het
Fabp4	T	A	3: 10,270,342 (GRCm39)	T103S	probably benign	Het
Fam43a	T	C	16: 30,420,106 (GRCm39)	L230P	probably damaging	Het
Fam83h	ACTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGT	ACTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGT	15: 75,874,624 (GRCm39)		probably benign	Het
Fank1	T	A	7: 133,478,493 (GRCm39)	Y186N	probably damaging	Het
Fbxo8	G	A	8: 57,044,555 (GRCm39)	R286K	possibly damaging	Het
Fmnl2	G	A	2: 52,997,678 (GRCm39)		probably null	Het
Gli2	T	A	1: 118,765,701 (GRCm39)	S817C	probably damaging	Het
Gm10110	C	T	14: 90,135,677 (GRCm39)	V76M	noncoding transcript	Het
Gstt2	C	G	10: 75,668,291 (GRCm39)	A155P	probably benign	Het
Ints9	T	A	14: 65,244,757 (GRCm39)	M213K	probably benign	Het
Jak1	G	A	4: 101,036,738 (GRCm39)	R301*	probably null	Het
Kdsr	T	C	1: 106,652,727 (GRCm39)	T302A	probably benign	Het
Khsrp	T	C	17: 57,331,123 (GRCm39)	E460G	probably damaging	Het
Nedd4l	A	G	18: 65,324,560 (GRCm39)	K487R	probably damaging	Het
Niban2	A	G	2: 32,809,029 (GRCm39)	E205G	probably benign	Het
Nwd1	T	A	8: 73,431,580 (GRCm39)	S1193T	probably damaging	Het
Or10ag57	A	T	2: 87,218,852 (GRCm39)	T268S	probably benign	Het
Or5k3	T	A	16: 58,969,529 (GRCm39)	C105*	probably null	Het
Or8b54	G	A	9: 38,686,577 (GRCm39)	V9M	noncoding transcript	Het
Padi1	T	C	4: 140,542,014 (GRCm39)	H636R	probably damaging	Het
Pdilt	A	G	7: 119,097,293 (GRCm39)	I266T	probably damaging	Het
Rell2	A	T	18: 38,090,665 (GRCm39)	Q114L	probably benign	Het
Rfc1	A	G	5: 65,426,289 (GRCm39)		probably null	Het
Rpia	T	C	6: 70,748,002 (GRCm39)	N265D	possibly damaging	Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGCGGCGG	7: 97,229,127 (GRCm39)		probably null	Het
Samd12	T	C	15: 53,723,645 (GRCm39)	D16G	probably damaging	Het
Slc25a54	T	C	3: 109,006,005 (GRCm39)		probably null	Het
Slc6a3	T	A	13: 73,705,200 (GRCm39)	D230E	probably benign	Het
Sorbs1	G	C	19: 40,365,244 (GRCm39)	R180G	probably benign	Het
Synpo2l	A	G	14: 20,711,204 (GRCm39)	V472A	probably benign	Het
Taf6l	A	G	19: 8,750,714 (GRCm39)	I120T	possibly damaging	Het
Tent5c	A	G	3: 100,380,327 (GRCm39)	V143A	probably damaging	Het
Trappc11	T	C	8: 47,969,624 (GRCm39)	D328G	probably damaging	Het
Trp53bp1	A	G	2: 121,029,523 (GRCm39)	S1836P	probably damaging	Het
Ugt2b37	G	A	5: 87,402,440 (GRCm39)	L64F	probably benign	Het
Vmn2r56	A	T	7: 12,449,601 (GRCm39)	Y212*	probably null	Het
Vps54	T	A	11: 21,250,464 (GRCm39)		probably benign	Het
Zfp268	A	T	4: 145,349,547 (GRCm39)	D328V	possibly damaging	Het
Zfp648	T	A	1: 154,080,535 (GRCm39)	H231Q	probably benign	Het
Zscan4d	T	A	7: 10,896,369 (GRCm39)	T334S	possibly damaging	Het
Zswim9	T	C	7: 12,995,536 (GRCm39)	M207V	probably benign	Het

Other mutations in Larp1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01506:Larp1b	APN	3	40,987,875 (GRCm39)	nonsense	probably null
IGL01636:Larp1b	APN	3	40,924,913 (GRCm39)	missense	probably benign	0.35
IGL01845:Larp1b	APN	3	40,924,960 (GRCm39)	missense	probably benign	0.03
IGL02192:Larp1b	APN	3	40,921,929 (GRCm39)	missense	probably benign	0.01
IGL03372:Larp1b	APN	3	40,978,962 (GRCm39)	missense	possibly damaging	0.79
R0396:Larp1b	UTSW	3	40,924,996 (GRCm39)	missense	probably damaging	1.00
R0512:Larp1b	UTSW	3	40,924,469 (GRCm39)	missense	probably benign	0.00
R0975:Larp1b	UTSW	3	40,924,925 (GRCm39)	missense	probably damaging	0.99
R1119:Larp1b	UTSW	3	40,987,963 (GRCm39)	missense	possibly damaging	0.87
R1337:Larp1b	UTSW	3	40,987,837 (GRCm39)	missense	probably damaging	1.00
R1460:Larp1b	UTSW	3	40,916,653 (GRCm39)	missense	probably benign
R1565:Larp1b	UTSW	3	40,926,819 (GRCm39)	missense	probably damaging	1.00
R1589:Larp1b	UTSW	3	40,987,909 (GRCm39)	missense	probably damaging	1.00
R1640:Larp1b	UTSW	3	40,988,507 (GRCm39)	start codon destroyed	probably null	0.04
R1899:Larp1b	UTSW	3	40,918,519 (GRCm39)	missense	probably benign	0.04
R2133:Larp1b	UTSW	3	40,924,970 (GRCm39)	missense	possibly damaging	0.69
R3054:Larp1b	UTSW	3	40,918,535 (GRCm39)	missense	probably benign	0.10
R4621:Larp1b	UTSW	3	40,918,424 (GRCm39)	missense	possibly damaging	0.71
R4818:Larp1b	UTSW	3	40,925,005 (GRCm39)	missense	probably damaging	1.00
R5023:Larp1b	UTSW	3	40,988,420 (GRCm39)	missense	possibly damaging	0.88
R5166:Larp1b	UTSW	3	40,918,487 (GRCm39)	nonsense	probably null
R5357:Larp1b	UTSW	3	40,978,950 (GRCm39)	missense	probably benign	0.04
R5364:Larp1b	UTSW	3	40,931,658 (GRCm39)	missense	probably damaging	0.99
R5492:Larp1b	UTSW	3	40,924,334 (GRCm39)	missense	probably damaging	0.99
R5495:Larp1b	UTSW	3	40,990,257 (GRCm39)	missense	probably damaging	1.00
R7070:Larp1b	UTSW	3	40,931,086 (GRCm39)	missense	probably damaging	1.00
R7293:Larp1b	UTSW	3	40,939,879 (GRCm39)	missense
R7615:Larp1b	UTSW	3	40,990,251 (GRCm39)	missense	probably benign	0.01
R7615:Larp1b	UTSW	3	40,987,969 (GRCm39)	missense	possibly damaging	0.79
R7717:Larp1b	UTSW	3	40,926,879 (GRCm39)	missense	probably damaging	0.97
R8060:Larp1b	UTSW	3	40,939,837 (GRCm39)	missense
R8429:Larp1b	UTSW	3	40,931,662 (GRCm39)	makesense	probably null
R8458:Larp1b	UTSW	3	40,930,995 (GRCm39)	missense	probably benign	0.00
R9189:Larp1b	UTSW	3	40,925,039 (GRCm39)	missense	probably damaging	1.00
R9468:Larp1b	UTSW	3	40,930,990 (GRCm39)	missense	probably benign	0.00
R9628:Larp1b	UTSW	3	40,916,103 (GRCm39)	critical splice donor site	probably null
X0021:Larp1b	UTSW	3	40,921,929 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGAGATCCTGTGCACAATAGAGTTG -3'
(R):5'- CCATGTAAGTATGGCTATGCATC -3'

Sequencing Primer
(F):5'- GGGCCTATCTGGAATATTCTC -3'
(R):5'- GGAGATAGGGTCTTTCACTACACC -3'

Posted On

2020-07-28