Mutagenetix > Incidental Mutation

Incidental Mutation 'R8290:Tcp10a'

638670

Institutional Source

Beutler Lab

Gene Symbol

Tcp10a

Ensembl Gene

ENSMUSG00000071322

Gene Name

t-complex protein 10a

Synonyms

Tcp-10a, D17Leh66A, T66A-a, D17Leh66aa, Gm10326

MMRRC Submission

067712-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

R8290 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

7592055-7613259 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 7601716 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 239 (E239K)

Ref Sequence

ENSEMBL: ENSMUSP00000093394 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095726] [ENSMUST00000128533] [ENSMUST00000129709] [ENSMUST00000138222] [ENSMUST00000140192] [ENSMUST00000144861]

AlphaFold

Q80W76

Predicted Effect

probably benign
Transcript: ENSMUST00000095726
AA Change: E239K

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000093394
Gene: ENSMUSG00000071322
AA Change: E239K

Domain	Start	End	E-Value	Type
coiled coil region	57	94	N/A	INTRINSIC
low complexity region	241	256	N/A	INTRINSIC
Pfam:Tcp10_C	263	437	1.3e-83	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000128533
AA Change: E239K

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000114351
Gene: ENSMUSG00000071322
AA Change: E239K

Domain	Start	End	E-Value	Type
coiled coil region	57	94	N/A	INTRINSIC
low complexity region	241	256	N/A	INTRINSIC
Pfam:Tcp10_C	261	438	1.1e-90	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129709
AA Change: E239K

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000114830
Gene: ENSMUSG00000071322
AA Change: E239K

Domain	Start	End	E-Value	Type
coiled coil region	57	94	N/A	INTRINSIC
low complexity region	241	256	N/A	INTRINSIC
Pfam:Tcp10_C	261	438	1.1e-90	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000138222
AA Change: E221K

PolyPhen 2 Score 0.292 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000115431
Gene: ENSMUSG00000071322
AA Change: E221K

Domain	Start	End	E-Value	Type
coiled coil region	36	76	N/A	INTRINSIC
low complexity region	223	238	N/A	INTRINSIC
Pfam:Tcp10_C	245	419	6.7e-84	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000140192
AA Change: E239K

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000117557
Gene: ENSMUSG00000071322
AA Change: E239K

Domain	Start	End	E-Value	Type
coiled coil region	57	94	N/A	INTRINSIC
low complexity region	241	256	N/A	INTRINSIC
Pfam:Tcp10_C	261	401	3.5e-68	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000144861
AA Change: E239K

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000122766
Gene: ENSMUSG00000071322
AA Change: E239K

Domain	Start	End	E-Value	Type
coiled coil region	57	94	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc12	A	T	8: 87,238,911 (GRCm39)	Y1100N	probably damaging	Het
Abcf2	CAT	CATAAT	5: 24,781,589 (GRCm39)		probably benign	Het
Adgrv1	T	C	13: 81,630,002 (GRCm39)	T3576A	probably benign	Het
Adnp2	A	T	18: 80,185,948 (GRCm39)	N8K	probably damaging	Het
Aftph	A	T	11: 20,675,712 (GRCm39)	H632Q	probably benign	Het
Arhgef11	A	T	3: 87,633,275 (GRCm39)	I710F	probably damaging	Het
Atp6v1c2	T	C	12: 17,338,153 (GRCm39)	N341S	possibly damaging	Het
Ccsap	T	G	8: 124,585,986 (GRCm39)	D55A	probably benign	Het
Cdh17	A	G	4: 11,817,037 (GRCm39)	N816S	probably benign	Het
Celf3	A	G	3: 94,386,489 (GRCm39)	I26V	probably benign	Het
Celsr1	G	T	15: 85,917,286 (GRCm39)	S229*	probably null	Het
Chek2	A	G	5: 111,008,766 (GRCm39)	E299G	possibly damaging	Het
Clca3a2	A	G	3: 144,793,719 (GRCm39)	V312A	possibly damaging	Het
Cnn1	A	G	9: 22,012,447 (GRCm39)	K25R	probably benign	Het
Cry1	A	T	10: 84,978,977 (GRCm39)	Y516*	probably null	Het
Dcaf4	T	C	12: 83,588,333 (GRCm39)	S498P	probably benign	Het
Dmgdh	T	C	13: 93,843,244 (GRCm39)	V360A	probably benign	Het
Dnajc18	G	A	18: 35,816,324 (GRCm39)	R205*	probably null	Het
Eif4a2	G	T	16: 22,927,372 (GRCm39)	G22C	probably damaging	Het
Elmo2	A	G	2: 165,150,923 (GRCm39)	I196T	probably damaging	Het
Epha3	A	G	16: 63,472,859 (GRCm39)	I342T	possibly damaging	Het
Epha8	G	T	4: 136,665,897 (GRCm39)	L420M	probably damaging	Het
Etf1	G	A	18: 35,064,891 (GRCm39)	P35L	unknown	Het
Etnk2	A	C	1: 133,307,127 (GRCm39)	*386C	probably null	Het
Fgg	A	T	3: 82,920,141 (GRCm39)	I307F	probably benign	Het
Flg2	A	G	3: 93,110,069 (GRCm39)	Q699R	unknown	Het
Foxp4	T	A	17: 48,191,778 (GRCm39)	T120S	unknown	Het
Fzd1	A	G	5: 4,807,060 (GRCm39)	V174A	possibly damaging	Het
Gad1	A	C	2: 70,404,610 (GRCm39)	I167L	probably benign	Het
Gfm2	T	A	13: 97,282,171 (GRCm39)	D55E	probably benign	Het
Grb14	G	T	2: 64,805,929 (GRCm39)	A12E	probably benign	Het
Hnmt	A	C	2: 23,893,896 (GRCm39)	Y199*	probably null	Het
Kit	A	G	5: 75,801,829 (GRCm39)	I615V	probably benign	Het
Kpna6	A	G	4: 129,555,097 (GRCm39)		probably null	Het
Lpxn	C	T	19: 12,810,052 (GRCm39)	R275C	probably damaging	Het
Magi1	C	T	6: 94,260,066 (GRCm39)	G80S	probably damaging	Het
Men1	A	G	19: 6,388,316 (GRCm39)	I312V	probably benign	Het
Msx2	A	G	13: 53,622,528 (GRCm39)	F161L	probably damaging	Het
Mtr	T	C	13: 12,205,139 (GRCm39)	D1107G	probably damaging	Het
Muc4	A	T	16: 32,575,434 (GRCm39)	M1397L	probably benign	Het
Mybpc3	A	G	2: 90,951,473 (GRCm39)	N259S	probably benign	Het
Myo5c	A	G	9: 75,196,178 (GRCm39)	K1242R	probably benign	Het
Myoc	T	C	1: 162,476,601 (GRCm39)	V435A	possibly damaging	Het
Nbea	G	A	3: 55,966,056 (GRCm39)	Q469*	probably null	Het
Ndufa10	A	C	1: 92,390,869 (GRCm39)	M227R	possibly damaging	Het
Obscn	C	T	11: 58,953,536 (GRCm39)	D3831N	probably damaging	Het
Obscn	T	C	11: 59,015,400 (GRCm39)	E1024G	probably damaging	Het
Oma1	T	C	4: 103,176,671 (GRCm39)	L145P	probably damaging	Het
Phf11	T	C	14: 59,485,418 (GRCm39)	Y114C	probably damaging	Het
Phf12	C	A	11: 77,920,465 (GRCm39)	N1000K	probably benign	Het
Plxnb1	G	T	9: 108,938,687 (GRCm39)	A1350S	probably benign	Het
Prkd1	C	T	12: 50,388,799 (GRCm39)	V915I	probably damaging	Het
Prkra	T	A	2: 76,463,982 (GRCm39)	N227Y	probably damaging	Het
Prtg	A	T	9: 72,798,077 (GRCm39)	H681L	probably damaging	Het
Rtn1	T	C	12: 72,355,193 (GRCm39)	K251R	probably benign	Het
Sema6b	A	T	17: 56,431,803 (GRCm39)	V620E	possibly damaging	Het
Senp7	T	A	16: 55,974,000 (GRCm39)	L407*	probably null	Het
Sh3pxd2a	A	T	19: 47,302,575 (GRCm39)	L168Q	probably damaging	Het
Shtn1	A	G	19: 58,988,326 (GRCm39)	L453P	probably damaging	Het
Slc26a6	G	A	9: 108,733,230 (GRCm39)	R43H	probably benign	Het
Stac3	T	C	10: 127,339,229 (GRCm39)		probably null	Het
Taf2	A	G	15: 54,926,416 (GRCm39)	F178S	probably damaging	Het
Ubox5	A	G	2: 130,442,333 (GRCm39)	V118A	probably damaging	Het
Unc13d	C	A	11: 115,958,973 (GRCm39)	L729F	probably damaging	Het
Vmn1r228	T	C	17: 20,996,724 (GRCm39)	T265A	probably benign	Het
Vmn2r100	G	A	17: 19,751,612 (GRCm39)	V615I	probably damaging	Het
Vmn2r60	T	G	7: 41,791,690 (GRCm39)	C538G	probably damaging	Het
Vmn2r93	A	T	17: 18,524,291 (GRCm39)	N95I	probably damaging	Het
Vsig2	A	G	9: 37,451,264 (GRCm39)	N55S	probably benign	Het
Zfp472	A	G	17: 33,197,088 (GRCm39)	T388A	probably benign	Het
Zfp853	G	A	5: 143,274,826 (GRCm39)	Q214*	probably null	Het
Zfp949	A	G	9: 88,451,293 (GRCm39)	R288G	probably damaging	Het

Other mutations in Tcp10a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01538:Tcp10a	APN	17	7,610,899 (GRCm39)	missense	probably damaging	1.00
IGL01868:Tcp10a	APN	17	7,597,263 (GRCm39)	missense	possibly damaging	0.79
IGL02942:Tcp10a	APN	17	7,597,318 (GRCm39)	missense	probably damaging	0.99
IGL03293:Tcp10a	APN	17	7,593,891 (GRCm39)	missense	possibly damaging	0.62
R0032:Tcp10a	UTSW	17	7,604,306 (GRCm39)	missense	probably benign	0.02
R0129:Tcp10a	UTSW	17	7,610,903 (GRCm39)	missense	probably damaging	1.00
R0271:Tcp10a	UTSW	17	7,598,555 (GRCm39)	missense	probably benign	0.06
R0352:Tcp10a	UTSW	17	7,593,805 (GRCm39)	missense	probably damaging	0.98
R0549:Tcp10a	UTSW	17	7,593,950 (GRCm39)	missense	probably benign	0.11
R1445:Tcp10a	UTSW	17	7,593,406 (GRCm39)	critical splice donor site	probably null
R2147:Tcp10a	UTSW	17	7,601,701 (GRCm39)	missense	probably damaging	0.98
R2937:Tcp10a	UTSW	17	7,597,173 (GRCm39)	missense	probably damaging	1.00
R4599:Tcp10a	UTSW	17	7,604,323 (GRCm39)	missense	probably damaging	0.99
R4601:Tcp10a	UTSW	17	7,593,374 (GRCm39)	missense	probably benign	0.01
R5982:Tcp10a	UTSW	17	7,612,425 (GRCm39)	missense	possibly damaging	0.61
R7132:Tcp10a	UTSW	17	7,612,351 (GRCm39)	missense	probably benign	0.16
R7687:Tcp10a	UTSW	17	7,612,507 (GRCm39)	missense	probably damaging	1.00
R9129:Tcp10a	UTSW	17	7,593,935 (GRCm39)	missense	probably benign	0.41
R9478:Tcp10a	UTSW	17	7,601,740 (GRCm39)	missense	probably benign	0.12
Z1088:Tcp10a	UTSW	17	7,593,848 (GRCm39)	missense	probably damaging	1.00
Z1176:Tcp10a	UTSW	17	7,592,117 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- GGGGCCTATGGTTTTCACAG -3'
(R):5'- AGAGGTGCACCAGCCATTAG -3'

Sequencing Primer
(F):5'- CACAGCATTGATGGACCTATGGTTC -3'
(R):5'- ATTAGCTTGTAGCCCCAGGACAG -3'

Posted On

2020-07-28