Mutagenetix > Incidental Mutation

Incidental Mutation 'R8293:Cd200r1'

638822

Institutional Source

Beutler Lab

Gene Symbol

Cd200r1

Ensembl Gene

ENSMUSG00000022667

Gene Name

CD200 receptor 1

Synonyms

CD200R, Mox2r, OX2R

MMRRC Submission

067783-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R8293 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

44586141-44615341 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 44610084 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 101 (N101S)

Ref Sequence

ENSEMBL: ENSMUSP00000053822 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057488] [ENSMUST00000134625]

AlphaFold

Q9ES57

PDB Structure

Structure of the extracellular portion of mouse CD200R [X-RAY DIFFRACTION]
Structure of the complex of the extracellular portions of mouse CD200R and mouse CD200 [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000057488
AA Change: N101S

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000053822
Gene: ENSMUSG00000022667
AA Change: N101S

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	44	147	2.41e-6	SMART
Blast:IG_like	149	231	8e-47	BLAST
transmembrane domain	239	261	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000134625
AA Change: N101S

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000138076
Gene: ENSMUSG00000022667
AA Change: N101S

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	44	147	2.41e-6	SMART
Blast:IG_like	149	231	8e-48	BLAST

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

98% (58/59)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a receptor for the OX-2 membrane glycoprotein. Both the receptor and substrate are cell surface glycoproteins containing two immunoglobulin-like domains. This receptor is restricted to the surfaces of myeloid lineage cells and the receptor-substrate interaction may function as a myeloid downregulatory signal. Mouse studies of a related gene suggest that this interaction may control myeloid function in a tissue-specific manner. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a disruption of this gene display abnormal sleep patterns including fragmented vigilance states and diminished duration of wakefulness. Mice homozygous for a different knock-out allele exhibit protection from HSV-1 encephalitis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700113H08Rik	T	C	10: 87,061,864 (GRCm39)	S105P	possibly damaging	Het
Acsm1	T	G	7: 119,237,319 (GRCm39)	S211A	possibly damaging	Het
Adam4	T	A	12: 81,467,185 (GRCm39)	R479*	probably null	Het
Agap3	A	C	5: 24,692,883 (GRCm39)	S439R	probably damaging	Het
Arap1	A	T	7: 101,050,141 (GRCm39)	H1075L	probably benign	Het
Arhgef28	T	C	13: 98,079,029 (GRCm39)	E1299G	probably benign	Het
Bnip5	T	C	17: 29,121,864 (GRCm39)	K468E	probably benign	Het
Cc2d2a	A	T	5: 43,845,570 (GRCm39)	I329F	probably damaging	Het
Ccdc9b	T	A	2: 118,591,796 (GRCm39)	T115S	probably damaging	Het
Ces2b	A	C	8: 105,559,258 (GRCm39)	T40P	unknown	Het
Cfap221	A	G	1: 119,909,504 (GRCm39)	V156A	possibly damaging	Het
Chrm4	C	T	2: 91,758,563 (GRCm39)	P324S	probably benign	Het
Chrna1	T	A	2: 73,400,850 (GRCm39)	M227L	probably benign	Het
Cntln	A	G	4: 84,952,075 (GRCm39)	D639G	probably damaging	Het
Cts8	A	G	13: 61,401,882 (GRCm39)	V5A	probably benign	Het
Cxcl2	A	T	5: 91,052,088 (GRCm39)	T65S	probably damaging	Het
Cyp2c39	G	T	19: 39,552,411 (GRCm39)	R368L	probably benign	Het
D630023F18Rik	A	T	1: 65,147,939 (GRCm39)	S205T	probably benign	Het
Dagla	A	T	19: 10,229,401 (GRCm39)		probably null	Het
Dtnbp1	G	A	13: 45,084,615 (GRCm39)	T175I	probably benign	Het
Dtx3	A	G	10: 127,026,882 (GRCm39)	L332P	probably damaging	Het
E2f4	A	G	8: 106,024,451 (GRCm39)	T27A	probably damaging	Het
Ep400	A	G	5: 110,856,758 (GRCm39)	F1163L	unknown	Het
Fam83h	ACTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGT	ACTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGTAGGGCTCCCCTTGCGCTCAGGGTAAGCTGGGGT	15: 75,874,624 (GRCm39)		probably benign	Het
Fbxo40	T	C	16: 36,790,387 (GRCm39)	D241G	probably benign	Het
Fus	T	C	7: 127,571,749 (GRCm39)	S184P	unknown	Het
Gabarap	C	A	11: 69,883,498 (GRCm39)	T87N	possibly damaging	Het
Gbp10	A	C	5: 105,372,235 (GRCm39)	V175G	probably damaging	Het
Gcm2	A	G	13: 41,256,646 (GRCm39)	Y368H	probably damaging	Het
Heca	A	G	10: 17,778,011 (GRCm39)	Y529H	probably damaging	Het
Incenp	G	A	19: 9,852,497 (GRCm39)	R714*	probably null	Het
Lvrn	C	A	18: 46,983,632 (GRCm39)	T125K	possibly damaging	Het
Ms4a6c	T	A	19: 11,455,660 (GRCm39)	S156R	probably benign	Het
Nab2	C	A	10: 127,502,266 (GRCm39)	R21L	possibly damaging	Het
Neb	A	T	2: 52,136,827 (GRCm39)	M3218K	probably benign	Het
Nwd2	A	G	5: 63,962,663 (GRCm39)	D749G	probably benign	Het
Nxpe5	A	T	5: 138,228,804 (GRCm39)	Q7L	probably benign	Het
Or10ak12	T	A	4: 118,666,939 (GRCm39)	T41S	probably benign	Het
Or4f62	A	T	2: 111,986,598 (GRCm39)	M101L	probably benign	Het
Or5p4	A	T	7: 107,680,269 (GRCm39)	E89D	probably benign	Het
Or8g26	A	G	9: 39,095,689 (GRCm39)	I72V	possibly damaging	Het
Pla2g5	A	G	4: 138,531,917 (GRCm39)	I29T	probably damaging	Het
Prpf31	C	T	7: 3,643,917 (GRCm39)	T499I	probably damaging	Het
Rnf130	T	A	11: 49,986,623 (GRCm39)	D322E	probably benign	Het
Ros1	T	C	10: 51,964,014 (GRCm39)	N1770D	probably damaging	Het
Sacs	T	A	14: 61,428,548 (GRCm39)	D202E	probably damaging	Het
Simc1	A	G	13: 54,674,359 (GRCm39)	I902M	probably damaging	Het
Slc12a8	A	T	16: 33,361,348 (GRCm39)	M77L	probably benign	Het
Slc35f2	G	A	9: 53,724,224 (GRCm39)	G366D	probably benign	Het
Slc44a2	A	G	9: 21,264,984 (GRCm39)	D674G	probably damaging	Het
Smok2a	A	C	17: 13,445,791 (GRCm39)	E456A	probably benign	Het
Stip1	T	C	19: 7,011,618 (GRCm39)	N139S	probably benign	Het
Taar8c	C	T	10: 23,977,015 (GRCm39)	V266M	probably benign	Het
Tank	T	A	2: 61,474,758 (GRCm39)	I204N	possibly damaging	Het
Tcerg1	A	G	18: 42,694,020 (GRCm39)	T714A	probably benign	Het
Tenm3	A	T	8: 48,820,457 (GRCm39)	F334I	possibly damaging	Het
Ubr1	T	C	2: 120,693,202 (GRCm39)	I1735V	probably benign	Het
Vps13a	A	T	19: 16,645,969 (GRCm39)	S2023T	possibly damaging	Het
Wdfy4	T	C	14: 32,696,218 (GRCm39)	H2741R		Het
Wnt10a	G	T	1: 74,842,376 (GRCm39)	R284L	probably damaging	Het

Other mutations in Cd200r1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00990:Cd200r1	APN	16	44,614,672 (GRCm39)	missense	possibly damaging	0.88
IGL02111:Cd200r1	APN	16	44,609,144 (GRCm39)	missense	probably damaging	0.99
IGL02549:Cd200r1	APN	16	44,610,341 (GRCm39)	missense	probably damaging	1.00
IGL03065:Cd200r1	APN	16	44,614,645 (GRCm39)	missense	probably benign	0.00
R0218:Cd200r1	UTSW	16	44,609,106 (GRCm39)	splice site	probably benign
R1512:Cd200r1	UTSW	16	44,586,390 (GRCm39)	missense	probably benign	0.21
R3605:Cd200r1	UTSW	16	44,609,939 (GRCm39)	missense	possibly damaging	0.90
R3877:Cd200r1	UTSW	16	44,610,374 (GRCm39)	missense	possibly damaging	0.82
R3963:Cd200r1	UTSW	16	44,613,158 (GRCm39)	missense	probably benign	0.03
R4109:Cd200r1	UTSW	16	44,610,447 (GRCm39)	missense	possibly damaging	0.95
R4171:Cd200r1	UTSW	16	44,613,127 (GRCm39)	missense	probably damaging	0.98
R4296:Cd200r1	UTSW	16	44,610,033 (GRCm39)	missense	probably damaging	0.98
R4396:Cd200r1	UTSW	16	44,586,417 (GRCm39)	missense	probably benign	0.01
R4922:Cd200r1	UTSW	16	44,610,039 (GRCm39)	missense	probably damaging	1.00
R5090:Cd200r1	UTSW	16	44,609,924 (GRCm39)	missense	possibly damaging	0.79
R5302:Cd200r1	UTSW	16	44,613,172 (GRCm39)	missense	possibly damaging	0.86
R5686:Cd200r1	UTSW	16	44,610,527 (GRCm39)	missense	probably damaging	1.00
R5838:Cd200r1	UTSW	16	44,586,397 (GRCm39)	missense	possibly damaging	0.75
R5886:Cd200r1	UTSW	16	44,610,566 (GRCm39)	missense	possibly damaging	0.75
R5913:Cd200r1	UTSW	16	44,610,034 (GRCm39)	missense	possibly damaging	0.50
R6529:Cd200r1	UTSW	16	44,610,065 (GRCm39)	missense	possibly damaging	0.81
R6959:Cd200r1	UTSW	16	44,610,539 (GRCm39)	missense	probably damaging	0.99
R7185:Cd200r1	UTSW	16	44,609,975 (GRCm39)	missense	probably benign	0.30
R7211:Cd200r1	UTSW	16	44,609,120 (GRCm39)	missense	probably benign	0.00
R7386:Cd200r1	UTSW	16	44,610,211 (GRCm39)	missense	probably benign	0.33
R7773:Cd200r1	UTSW	16	44,610,050 (GRCm39)	missense	possibly damaging	0.69
RF007:Cd200r1	UTSW	16	44,610,374 (GRCm39)	missense	possibly damaging	0.82
Z1176:Cd200r1	UTSW	16	44,613,122 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CTGTGTATCCAGTGAACACTACAG -3'
(R):5'- CCTCACAGACTGCAGATCTG -3'

Sequencing Primer
(F):5'- CACTACAGTGTCTGTACAGATAGG -3'
(R):5'- AGGTTACTTCAGGGGGCAC -3'

Posted On

2020-07-28