Incidental Mutation 'R8297:Gca'
ID 638995
Institutional Source Beutler Lab
Gene Symbol Gca
Ensembl Gene ENSMUSG00000026893
Gene Name grancalcin
Synonyms 5133401E04Rik
MMRRC Submission 067853-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.098) question?
Stock # R8297 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 62494671-62524453 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 62516700 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 132 (M132T)
Ref Sequence ENSEMBL: ENSMUSP00000028257 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028257]
AlphaFold Q8VC88
Predicted Effect probably benign
Transcript: ENSMUST00000028257
AA Change: M132T

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000028257
Gene: ENSMUSG00000026893
AA Change: M132T

DomainStartEndE-ValueType
low complexity region 15 33 N/A INTRINSIC
EFh 96 124 1.4e0 SMART
EFh 126 154 4.29e-1 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency 100% (61/61)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a calcium-binding protein that is abundant in neutrophils and macrophages. In the absence of divalent cation, this protein localizes to the cytosolic fraction; with magnesium alone, it partitions with the granule fraction; and in the presence of magnesium and calcium, it associates with both the granule and membrane fractions. Alternative splicing and use of alternative promoters results in multiple transcript variants. [provided by RefSeq, Aug 2016]
PHENOTYPE: Mice homozygous for disruptions in this gene are essentially normal. However they do demonstrate an increased resistance to endotoxic shock. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700020N01Rik T C 10: 21,497,578 (GRCm39) L73P probably damaging Het
4933412E24Rik T G 15: 59,887,524 (GRCm39) R305S probably damaging Het
Adamts19 T A 18: 58,970,920 (GRCm39) V168E probably damaging Het
Ankrd34b T A 13: 92,576,097 (GRCm39) L443Q probably damaging Het
Ano3 A G 2: 110,491,616 (GRCm39) Y887H probably damaging Het
Arhgef2 A T 3: 88,546,739 (GRCm39) H553L probably benign Het
Atxn1 G T 13: 45,720,505 (GRCm39) N463K probably benign Het
Birc6 A G 17: 74,932,099 (GRCm39) probably null Het
C4bp A G 1: 130,564,482 (GRCm39) S401P probably damaging Het
Cd5 T A 19: 10,697,609 (GRCm39) R457W probably damaging Het
Chek2 T G 5: 110,996,302 (GRCm39) Y127D probably damaging Het
Clec4a1 G A 6: 122,898,960 (GRCm39) V10M probably damaging Het
Cltc A G 11: 86,603,457 (GRCm39) Y790H probably damaging Het
Cops2 T C 2: 125,701,028 (GRCm39) probably benign Het
Cyb5d2 A G 11: 72,679,929 (GRCm39) F122S probably damaging Het
Daam1 T A 12: 71,998,689 (GRCm39) L548H unknown Het
Dcp1a A G 14: 30,244,883 (GRCm39) T570A possibly damaging Het
Dsg1a A C 18: 20,465,090 (GRCm39) N427T probably benign Het
Ear14 A T 14: 51,441,564 (GRCm39) D140V probably damaging Het
Epha4 A C 1: 77,483,547 (GRCm39) F154C probably damaging Het
Ets2 G A 16: 95,507,321 (GRCm39) V12M probably damaging Het
Fbxo40 G A 16: 36,789,670 (GRCm39) T480I probably damaging Het
Fdps A T 3: 89,001,048 (GRCm39) Y322N probably damaging Het
Ifi203 T G 1: 173,765,496 (GRCm39) K26T probably damaging Het
Itga10 A G 3: 96,562,116 (GRCm39) R668G probably damaging Het
Itgal T C 7: 126,929,638 (GRCm39) I1185T unknown Het
Kcnj13 A T 1: 87,314,189 (GRCm39) N344K probably damaging Het
Kdm5a A T 6: 120,358,516 (GRCm39) L186F probably benign Het
Klhl8 T C 5: 104,010,954 (GRCm39) N624D probably benign Het
Klrb1 G T 6: 128,689,222 (GRCm39) T83K possibly damaging Het
Krt77 TGCCGCCGCCGCCGCCGCCGCCGCCGC TGCCGCCGCCGCCGCCGCCGCCGC 15: 101,768,407 (GRCm39) probably benign Het
Ltb G T 17: 35,413,655 (GRCm39) R53L probably benign Het
Mterf3 A G 13: 67,055,222 (GRCm39) V69A Het
Mvb12a A G 8: 71,997,888 (GRCm39) K101E probably damaging Het
Nbeal2 T A 9: 110,464,409 (GRCm39) Q1110L possibly damaging Het
Neb T A 2: 52,198,775 (GRCm39) T389S possibly damaging Het
Nol4 A G 18: 23,173,069 (GRCm39) F11L probably damaging Het
Or10p22 T C 10: 128,826,708 (GRCm39) L309P possibly damaging Het
Or2a54 A G 6: 43,093,440 (GRCm39) I255V probably benign Het
Or2h15 A G 17: 38,441,484 (GRCm39) S200P probably damaging Het
Or52e8b C T 7: 104,673,885 (GRCm39) G97R probably benign Het
Pde2a T A 7: 101,153,880 (GRCm39) Y487N possibly damaging Het
Pde4a C T 9: 21,077,404 (GRCm39) P61S possibly damaging Het
Pramel16 T A 4: 143,675,690 (GRCm39) T379S probably benign Het
Prr5l A G 2: 101,571,630 (GRCm39) probably null Het
Ptpn6 G A 6: 124,705,614 (GRCm39) T179I possibly damaging Het
Ralyl T C 3: 14,104,836 (GRCm39) S34P probably benign Het
Rftn1 G T 17: 50,354,408 (GRCm39) A318D probably damaging Het
Robo2 A T 16: 73,812,814 (GRCm39) C293* probably null Het
Rtn4 T G 11: 29,655,536 (GRCm39) D169E probably damaging Het
Slc22a22 A T 15: 57,122,506 (GRCm39) V157E probably damaging Het
Sytl2 A G 7: 90,034,283 (GRCm39) T498A probably benign Het
Tgm6 G A 2: 129,979,358 (GRCm39) V163I probably benign Het
Tnpo3 A T 6: 29,582,302 (GRCm39) C187S possibly damaging Het
Ttn A G 2: 76,616,485 (GRCm39) probably null Het
Tut4 G A 4: 108,336,905 (GRCm39) A210T possibly damaging Het
Vangl2 C A 1: 171,837,513 (GRCm39) V99F possibly damaging Het
Vmn1r167 C T 7: 23,204,215 (GRCm39) C267Y probably damaging Het
Vsig10l T C 7: 43,113,531 (GRCm39) V161A possibly damaging Het
Xrcc5 G A 1: 72,364,244 (GRCm39) R232Q possibly damaging Het
Xrcc6 C G 15: 81,913,463 (GRCm39) F365L probably damaging Het
Zdhhc13 A G 7: 48,465,257 (GRCm39) Y389C probably damaging Het
Other mutations in Gca
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01291:Gca APN 2 62,520,787 (GRCm39) nonsense probably null
IGL02754:Gca APN 2 62,502,702 (GRCm39) missense probably benign
ANU05:Gca UTSW 2 62,520,787 (GRCm39) nonsense probably null
R2510:Gca UTSW 2 62,520,318 (GRCm39) missense probably damaging 0.99
R3433:Gca UTSW 2 62,520,318 (GRCm39) missense probably damaging 0.99
R3893:Gca UTSW 2 62,509,564 (GRCm39) missense probably damaging 1.00
R7299:Gca UTSW 2 62,520,320 (GRCm39) missense probably benign 0.00
R7462:Gca UTSW 2 62,502,753 (GRCm39) missense possibly damaging 0.71
R9172:Gca UTSW 2 62,520,368 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCGGGCTAACTGCAAAAGAATG -3'
(R):5'- TTGTGAGCCAAAATTAAGGGACAC -3'

Sequencing Primer
(F):5'- GTGTACTTTTCAGTCAGTGATTCAGC -3'
(R):5'- TGGTTACCAGCGTGTACAC -3'
Posted On 2020-07-28