Mutagenetix > Incidental Mutation

Incidental Mutation 'R8297:Dcp1a'

639034

Institutional Source

Beutler Lab

Gene Symbol

Dcp1a

Ensembl Gene

ENSMUSG00000021962

Gene Name

decapping mRNA 1A

Synonyms

SMIF, Mitc1, 1110066A22Rik, D14Ertd817e, 4930568L04Rik

MMRRC Submission

067853-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.262) question?

Stock #

R8297 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

30201613-30249013 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 30244883 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 570 (T570A)

Ref Sequence

ENSEMBL: ENSMUSP00000022535 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022535] [ENSMUST00000225196] [ENSMUST00000225286]

AlphaFold

Q91YD3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000022535
AA Change: T570A

PolyPhen 2 Score 0.872 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000022535
Gene: ENSMUSG00000021962
AA Change: T570A

Domain	Start	End	E-Value	Type
Pfam:DCP1	28	144	1.8e-44	PFAM
low complexity region	327	343	N/A	INTRINSIC
low complexity region	457	472	N/A	INTRINSIC
Pfam:mRNA_decap_C	559	601	6.3e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000223658

Predicted Effect

possibly damaging
Transcript: ENSMUST00000225196
AA Change: T570A

PolyPhen 2 Score 0.872 (Sensitivity: 0.83; Specificity: 0.93)

Predicted Effect

probably benign
Transcript: ENSMUST00000225286

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (61/61)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Decapping is a key step in general and regulated mRNA decay. The protein encoded by this gene is a decapping enzyme. This protein and another decapping enzyme form a decapping complex, which interacts with the nonsense-mediated decay factor hUpf1 and may be recruited to mRNAs containing premature termination codons. This protein also participates in the TGF-beta signaling pathway. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Feb 2014]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700020N01Rik	T	C	10: 21,497,578 (GRCm39)	L73P	probably damaging	Het
4933412E24Rik	T	G	15: 59,887,524 (GRCm39)	R305S	probably damaging	Het
Adamts19	T	A	18: 58,970,920 (GRCm39)	V168E	probably damaging	Het
Ankrd34b	T	A	13: 92,576,097 (GRCm39)	L443Q	probably damaging	Het
Ano3	A	G	2: 110,491,616 (GRCm39)	Y887H	probably damaging	Het
Arhgef2	A	T	3: 88,546,739 (GRCm39)	H553L	probably benign	Het
Atxn1	G	T	13: 45,720,505 (GRCm39)	N463K	probably benign	Het
Birc6	A	G	17: 74,932,099 (GRCm39)		probably null	Het
C4bp	A	G	1: 130,564,482 (GRCm39)	S401P	probably damaging	Het
Cd5	T	A	19: 10,697,609 (GRCm39)	R457W	probably damaging	Het
Chek2	T	G	5: 110,996,302 (GRCm39)	Y127D	probably damaging	Het
Clec4a1	G	A	6: 122,898,960 (GRCm39)	V10M	probably damaging	Het
Cltc	A	G	11: 86,603,457 (GRCm39)	Y790H	probably damaging	Het
Cops2	T	C	2: 125,701,028 (GRCm39)		probably benign	Het
Cyb5d2	A	G	11: 72,679,929 (GRCm39)	F122S	probably damaging	Het
Daam1	T	A	12: 71,998,689 (GRCm39)	L548H	unknown	Het
Dsg1a	A	C	18: 20,465,090 (GRCm39)	N427T	probably benign	Het
Ear14	A	T	14: 51,441,564 (GRCm39)	D140V	probably damaging	Het
Epha4	A	C	1: 77,483,547 (GRCm39)	F154C	probably damaging	Het
Ets2	G	A	16: 95,507,321 (GRCm39)	V12M	probably damaging	Het
Fbxo40	G	A	16: 36,789,670 (GRCm39)	T480I	probably damaging	Het
Fdps	A	T	3: 89,001,048 (GRCm39)	Y322N	probably damaging	Het
Gca	T	C	2: 62,516,700 (GRCm39)	M132T	probably benign	Het
Ifi203	T	G	1: 173,765,496 (GRCm39)	K26T	probably damaging	Het
Itga10	A	G	3: 96,562,116 (GRCm39)	R668G	probably damaging	Het
Itgal	T	C	7: 126,929,638 (GRCm39)	I1185T	unknown	Het
Kcnj13	A	T	1: 87,314,189 (GRCm39)	N344K	probably damaging	Het
Kdm5a	A	T	6: 120,358,516 (GRCm39)	L186F	probably benign	Het
Klhl8	T	C	5: 104,010,954 (GRCm39)	N624D	probably benign	Het
Klrb1	G	T	6: 128,689,222 (GRCm39)	T83K	possibly damaging	Het
Krt77	TGCCGCCGCCGCCGCCGCCGCCGCCGC	TGCCGCCGCCGCCGCCGCCGCCGC	15: 101,768,407 (GRCm39)		probably benign	Het
Ltb	G	T	17: 35,413,655 (GRCm39)	R53L	probably benign	Het
Mterf3	A	G	13: 67,055,222 (GRCm39)	V69A		Het
Mvb12a	A	G	8: 71,997,888 (GRCm39)	K101E	probably damaging	Het
Nbeal2	T	A	9: 110,464,409 (GRCm39)	Q1110L	possibly damaging	Het
Neb	T	A	2: 52,198,775 (GRCm39)	T389S	possibly damaging	Het
Nol4	A	G	18: 23,173,069 (GRCm39)	F11L	probably damaging	Het
Or10p22	T	C	10: 128,826,708 (GRCm39)	L309P	possibly damaging	Het
Or2a54	A	G	6: 43,093,440 (GRCm39)	I255V	probably benign	Het
Or2h15	A	G	17: 38,441,484 (GRCm39)	S200P	probably damaging	Het
Or52e8b	C	T	7: 104,673,885 (GRCm39)	G97R	probably benign	Het
Pde2a	T	A	7: 101,153,880 (GRCm39)	Y487N	possibly damaging	Het
Pde4a	C	T	9: 21,077,404 (GRCm39)	P61S	possibly damaging	Het
Pramel16	T	A	4: 143,675,690 (GRCm39)	T379S	probably benign	Het
Prr5l	A	G	2: 101,571,630 (GRCm39)		probably null	Het
Ptpn6	G	A	6: 124,705,614 (GRCm39)	T179I	possibly damaging	Het
Ralyl	T	C	3: 14,104,836 (GRCm39)	S34P	probably benign	Het
Rftn1	G	T	17: 50,354,408 (GRCm39)	A318D	probably damaging	Het
Robo2	A	T	16: 73,812,814 (GRCm39)	C293*	probably null	Het
Rtn4	T	G	11: 29,655,536 (GRCm39)	D169E	probably damaging	Het
Slc22a22	A	T	15: 57,122,506 (GRCm39)	V157E	probably damaging	Het
Sytl2	A	G	7: 90,034,283 (GRCm39)	T498A	probably benign	Het
Tgm6	G	A	2: 129,979,358 (GRCm39)	V163I	probably benign	Het
Tnpo3	A	T	6: 29,582,302 (GRCm39)	C187S	possibly damaging	Het
Ttn	A	G	2: 76,616,485 (GRCm39)		probably null	Het
Tut4	G	A	4: 108,336,905 (GRCm39)	A210T	possibly damaging	Het
Vangl2	C	A	1: 171,837,513 (GRCm39)	V99F	possibly damaging	Het
Vmn1r167	C	T	7: 23,204,215 (GRCm39)	C267Y	probably damaging	Het
Vsig10l	T	C	7: 43,113,531 (GRCm39)	V161A	possibly damaging	Het
Xrcc5	G	A	1: 72,364,244 (GRCm39)	R232Q	possibly damaging	Het
Xrcc6	C	G	15: 81,913,463 (GRCm39)	F365L	probably damaging	Het
Zdhhc13	A	G	7: 48,465,257 (GRCm39)	Y389C	probably damaging	Het

Other mutations in Dcp1a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01653:Dcp1a	APN	14	30,227,528 (GRCm39)	missense	possibly damaging	0.52
IGL02698:Dcp1a	APN	14	30,227,499 (GRCm39)	splice site	probably benign
IGL02799:Dcp1a	UTSW	14	30,241,636 (GRCm39)	critical splice donor site	probably null
R0240:Dcp1a	UTSW	14	30,206,551 (GRCm39)	splice site	probably benign
R0387:Dcp1a	UTSW	14	30,241,636 (GRCm39)	critical splice donor site	probably null
R0646:Dcp1a	UTSW	14	30,224,842 (GRCm39)	missense	probably damaging	1.00
R1781:Dcp1a	UTSW	14	30,235,032 (GRCm39)	missense	probably benign	0.37
R1843:Dcp1a	UTSW	14	30,240,940 (GRCm39)	missense	probably damaging	0.99
R2111:Dcp1a	UTSW	14	30,241,327 (GRCm39)	missense	probably benign	0.00
R3176:Dcp1a	UTSW	14	30,227,499 (GRCm39)	splice site	probably benign
R4948:Dcp1a	UTSW	14	30,201,724 (GRCm39)	missense	probably damaging	1.00
R5541:Dcp1a	UTSW	14	30,224,796 (GRCm39)	missense	probably damaging	1.00
R6178:Dcp1a	UTSW	14	30,245,261 (GRCm39)	makesense	probably null
R7767:Dcp1a	UTSW	14	30,201,775 (GRCm39)	critical splice donor site	probably null
R7818:Dcp1a	UTSW	14	30,201,678 (GRCm39)	missense	probably damaging	0.99
R8248:Dcp1a	UTSW	14	30,244,883 (GRCm39)	missense	possibly damaging	0.87
R8248:Dcp1a	UTSW	14	30,201,555 (GRCm39)	intron	probably benign
R8250:Dcp1a	UTSW	14	30,244,883 (GRCm39)	missense	possibly damaging	0.87
R8271:Dcp1a	UTSW	14	30,244,883 (GRCm39)	missense	possibly damaging	0.87
R8302:Dcp1a	UTSW	14	30,244,883 (GRCm39)	missense	possibly damaging	0.87
R8326:Dcp1a	UTSW	14	30,241,527 (GRCm39)	nonsense	probably null
R8333:Dcp1a	UTSW	14	30,244,883 (GRCm39)	missense	possibly damaging	0.87
R8818:Dcp1a	UTSW	14	30,240,899 (GRCm39)	missense	possibly damaging	0.64
R9554:Dcp1a	UTSW	14	30,201,691 (GRCm39)	missense	probably benign	0.01
R9599:Dcp1a	UTSW	14	30,241,497 (GRCm39)	missense	probably benign
R9641:Dcp1a	UTSW	14	30,241,132 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCTGTGTCCCGGCAGATTG -3'
(R):5'- CCCAGAGGCAGTTACAATGACAG -3'

Sequencing Primer
(F):5'- CAGATTGCAGGCTCTCCATTGG -3'
(R):5'- TGACAGTCCAGGTTTACAGC -3'

Posted On

2020-07-28