Mutagenetix > Incidental Mutations

Incidental Mutation 'R8301:Orm2'

639244

Institutional Source

Beutler Lab

Gene Symbol

Orm2

Ensembl Gene

ENSMUSG00000061540

Gene Name

orosomucoid 2

Synonyms

Orm-2

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R8301 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

63362449-63365878 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 63363026 bp

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 67 (F67S)

Ref Sequence

ENSEMBL: ENSMUSP00000074810 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006687] [ENSMUST00000035724] [ENSMUST00000075341]

Predicted Effect

probably benign
Transcript: ENSMUST00000006687

SMART Domains

Protein: ENSMUSP00000006687
Gene: ENSMUSG00000028359

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:Lipocalin	40	180	4.8e-25	PFAM
low complexity region	185	199	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000035724

SMART Domains

Protein: ENSMUSP00000041614
Gene: ENSMUSG00000039158

Domain	Start	End	E-Value	Type
low complexity region	140	153	N/A	INTRINSIC
coiled coil region	423	458	N/A	INTRINSIC
Pfam:AKNA	584	681	4.6e-37	PFAM
low complexity region	760	774	N/A	INTRINSIC
low complexity region	1015	1029	N/A	INTRINSIC
coiled coil region	1044	1066	N/A	INTRINSIC
low complexity region	1296	1317	N/A	INTRINSIC
low complexity region	1319	1343	N/A	INTRINSIC
coiled coil region	1353	1386	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000075341
AA Change: F67S

PolyPhen 2 Score 0.804 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000074810
Gene: ENSMUSG00000061540
AA Change: F67S

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:Lipocalin	41	181	1.5e-23	PFAM
low complexity region	186	200	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	A	T	5: 87,972,505	I374F	probably benign	Het
9430076C15Rik	A	G	6: 53,681,033	D116G	possibly damaging	Het
Ak9	G	A	10: 41,424,716	V1108I		Het
Aldh16a1	C	T	7: 45,141,982	A790T	possibly damaging	Het
Antxr2	T	G	5: 97,977,679	T240P	probably benign	Het
Arfgef1	A	T	1: 10,179,833	M945K	probably damaging	Het
Arhgef17	T	C	7: 100,879,659	T1591A	probably benign	Het
Aurka	A	G	2: 172,356,930	S374P	probably damaging	Het
Bccip	T	C	7: 133,719,204	S236P	probably benign	Het
Calm1	A	G	12: 100,205,685	E132G	probably benign	Het
Casz1	A	G	4: 148,946,043	D1173G	probably damaging	Het
Cdh17	A	G	4: 11,795,659	D413G	probably damaging	Het
Cfap57	A	G	4: 118,593,074	I617T	possibly damaging	Het
Csnka2ip	A	C	16: 64,478,991	S337A	unknown	Het
Ddx60	A	G	8: 62,000,597	E1250G	probably benign	Het
Dlgap2	T	A	8: 14,823,577	S727T	probably benign	Het
Ebf2	A	G	14: 67,238,982	T134A	possibly damaging	Het
Echdc2	A	T	4: 108,172,909	M136L	probably benign	Het
Enpp2	A	G	15: 54,851,407	F598S	probably benign	Het
Extl3	A	C	14: 65,076,284	L483R	probably damaging	Het
Gcat	T	C	15: 79,035,889	V227A	possibly damaging	Het
Hsf2	A	G	10: 57,505,346	D344G	probably damaging	Het
Ighm	C	T	12: 113,421,545	G265D		Het
Ints6	A	G	14: 62,702,453	V596A	probably benign	Het
Ints8	T	C	4: 11,246,120	E182G	probably damaging	Het
Iqgap2	A	G	13: 95,682,151		probably null	Het
Kalrn	G	T	16: 34,357,100	Q250K	probably benign	Het
Lrrc1	T	A	9: 77,544,488	N46Y	probably damaging	Het
Myl10	G	C	5: 136,697,971	V70L	probably benign	Het
Naa50	A	G	16: 44,157,131	N74S	probably benign	Het
Neb	T	C	2: 52,288,835	N1303S	probably benign	Het
Nfs1	A	T	2: 156,134,493	C160*	probably null	Het
Olfr472	A	G	7: 107,903,626	K303R	probably benign	Het
Olfr591	T	G	7: 103,173,073	K188T	probably damaging	Het
Olfr740	T	A	14: 50,453,564	S171T	probably benign	Het
Olfr809	T	C	10: 129,776,840	S309P	probably benign	Het
Pex5	A	G	6: 124,405,183	S180P	probably benign	Het
Phf14	G	C	6: 11,992,062	G746R	probably damaging	Het
Pkm	T	A	9: 59,668,631	V110E	probably damaging	Het
Plekha6	T	G	1: 133,264,687	N78K	probably damaging	Het
Plxna2	G	A	1: 194,790,175	V1076I	probably benign	Het
Polq	C	A	16: 37,061,819	D1448E	probably damaging	Het
Pot1b	T	C	17: 55,687,895	T256A	probably benign	Het
Prkch	C	T	12: 73,702,764	T377I	possibly damaging	Het
Prl7b1	A	C	13: 27,602,772	V158G	possibly damaging	Het
Prss22	T	C	17: 23,993,981	S261G	probably damaging	Het
Psg18	A	T	7: 18,353,377	Y119N	probably damaging	Het
Rbm6	T	G	9: 107,852,794	R218S	probably damaging	Het
Rnf213	T	A	11: 119,434,742	S1491T		Het
Rsf1	T	C	7: 97,661,925	S621P		Het
Runx1	C	A	16: 92,605,656	*466L	probably null	Het
Samd4	A	G	14: 47,016,678	I200V	probably benign	Het
Sdsl	C	T	5: 120,459,519	C241Y	probably benign	Het
Setx	C	T	2: 29,145,690	P729L	possibly damaging	Het
Sf1	C	T	19: 6,368,366	Q55*	probably null	Het
Slc12a5	A	T	2: 164,993,691	N833I	probably damaging	Het
Slc1a4	T	C	11: 20,332,286	R63G	probably damaging	Het
Tmeff2	G	T	1: 51,181,837	A324S	probably benign	Het
Tmem217	A	G	17: 29,526,492	I88T	possibly damaging	Het
Tnfsf8	A	T	4: 63,860,878	I61N	probably benign	Het
Tpbgl	G	T	7: 99,625,567	A361E	probably damaging	Het
Trhde	T	A	10: 114,487,006	E667V	probably benign	Het
Unc13b	A	G	4: 43,263,568	T1598A	probably benign	Het
Vmn2r73	A	T	7: 85,858,302	C601S	probably benign	Het
Zfp873	C	A	10: 82,060,879	H481Q	probably damaging	Het

Other mutations in Orm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00933:Orm2	APN	4	63364152	splice site	probably benign
IGL01369:Orm2	APN	4	63362978	missense	probably benign	0.00
IGL02321:Orm2	APN	4	63362992	missense	probably damaging	0.99
IGL02401:Orm2	APN	4	63363331	missense	probably benign
IGL02666:Orm2	APN	4	63365733	missense	possibly damaging	0.91
R0383:Orm2	UTSW	4	63363996	missense	probably damaging	1.00
R4157:Orm2	UTSW	4	63363985	missense	probably null	0.92
R4615:Orm2	UTSW	4	63363299	missense	probably damaging	0.99
R6363:Orm2	UTSW	4	63362604	critical splice donor site	probably null
R6791:Orm2	UTSW	4	63363959	missense	probably benign	0.00
X0024:Orm2	UTSW	4	63364197	missense	probably benign	0.28

Predicted Primers

PCR Primer
(F):5'- TGAGTTGCCCATTTGAGCTTC -3'
(R):5'- AGGTAAACAAGAAAGCTGTCCC -3'

Sequencing Primer
(F):5'- CCCATGTATGGTTCAGAAGCCATTG -3'
(R):5'- TGTCCCCATTCCAGAAGGTG -3'

Posted On

2020-07-28