Mutagenetix > Incidental Mutation

Incidental Mutation 'R8301:Psg18'

639256

Institutional Source

Beutler Lab

Gene Symbol

Psg18

Ensembl Gene

ENSMUSG00000003505

Gene Name

pregnancy specific beta-1-glycoprotein 18

Synonyms

Cea-3, mmCGM6, Cea3

MMRRC Submission

067789-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R8301 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

18079669-18088963 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 18087302 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 119 (Y119N)

Ref Sequence

ENSEMBL: ENSMUSP00000003597 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003597] [ENSMUST00000098783]

AlphaFold

B2RSG7

Predicted Effect

probably damaging
Transcript: ENSMUST00000003597
AA Change: Y119N

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000003597
Gene: ENSMUSG00000003505
AA Change: Y119N

Domain	Start	End	E-Value	Type
low complexity region	19	30	N/A	INTRINSIC
IG	40	140	2.11e-2	SMART
IG	161	262	1.03e0	SMART
IG	281	380	2.15e-3	SMART
IGc2	398	462	1.58e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000098783

SMART Domains

Protein: ENSMUSP00000096380
Gene: ENSMUSG00000003505

Domain	Start	End	E-Value	Type
IG	40	141	1.03e0	SMART
IG	160	259	2.15e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000182983

Meta Mutation Damage Score

0.6329

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	A	T	5: 88,120,364 (GRCm39)	I374F	probably benign	Het
Ak9	G	A	10: 41,300,712 (GRCm39)	V1108I		Het
Aldh16a1	C	T	7: 44,791,406 (GRCm39)	A790T	possibly damaging	Het
Anks1	A	T	17: 28,278,554 (GRCm39)		probably benign	Het
Antxr2	T	G	5: 98,125,538 (GRCm39)	T240P	probably benign	Het
Arfgef1	A	T	1: 10,250,058 (GRCm39)	M945K	probably damaging	Het
Arhgef17	T	C	7: 100,528,866 (GRCm39)	T1591A	probably benign	Het
Aurka	A	G	2: 172,198,850 (GRCm39)	S374P	probably damaging	Het
Bccip	T	C	7: 133,320,933 (GRCm39)	S236P	probably benign	Het
Cacna1s	T	A	1: 136,001,179 (GRCm39)		probably benign	Het
Calm1	A	G	12: 100,171,944 (GRCm39)	E132G	probably benign	Het
Casz1	A	G	4: 149,030,500 (GRCm39)	D1173G	probably damaging	Het
Cdh17	A	G	4: 11,795,659 (GRCm39)	D413G	probably damaging	Het
Cfap57	A	G	4: 118,450,271 (GRCm39)	I617T	possibly damaging	Het
Creb5	A	G	6: 53,658,018 (GRCm39)	D116G	possibly damaging	Het
Csnka2ip	A	C	16: 64,299,354 (GRCm39)	S337A	unknown	Het
Ddx60	A	G	8: 62,453,631 (GRCm39)	E1250G	probably benign	Het
Dlgap2	T	A	8: 14,873,577 (GRCm39)	S727T	probably benign	Het
Dpy19l1	T	C	9: 24,396,407 (GRCm39)		probably benign	Het
Ebf2	A	G	14: 67,476,431 (GRCm39)	T134A	possibly damaging	Het
Echdc2	A	T	4: 108,030,106 (GRCm39)	M136L	probably benign	Het
Enpp2	A	G	15: 54,714,803 (GRCm39)	F598S	probably benign	Het
Extl3	A	C	14: 65,313,733 (GRCm39)	L483R	probably damaging	Het
Gcat	T	C	15: 78,920,089 (GRCm39)	V227A	possibly damaging	Het
Hsf2	A	G	10: 57,381,442 (GRCm39)	D344G	probably damaging	Het
Ighm	C	T	12: 113,385,165 (GRCm39)	G265D		Het
Igsf9b	T	G	9: 27,246,035 (GRCm39)		probably benign	Het
Ints6	A	G	14: 62,939,902 (GRCm39)	V596A	probably benign	Het
Ints8	T	C	4: 11,246,120 (GRCm39)	E182G	probably damaging	Het
Iqgap2	A	G	13: 95,818,659 (GRCm39)		probably null	Het
Kalrn	G	T	16: 34,177,470 (GRCm39)	Q250K	probably benign	Het
Lrrc1	T	A	9: 77,451,770 (GRCm39)	N46Y	probably damaging	Het
Myl10	G	C	5: 136,726,825 (GRCm39)	V70L	probably benign	Het
Naa50	A	G	16: 43,977,494 (GRCm39)	N74S	probably benign	Het
Neb	T	C	2: 52,178,847 (GRCm39)	N1303S	probably benign	Het
Nfs1	A	T	2: 155,976,413 (GRCm39)	C160*	probably null	Het
Or11g7	T	A	14: 50,691,021 (GRCm39)	S171T	probably benign	Het
Or52s1b	T	G	7: 102,822,280 (GRCm39)	K188T	probably damaging	Het
Or5p52	A	G	7: 107,502,833 (GRCm39)	K303R	probably benign	Het
Or6c76	T	C	10: 129,612,709 (GRCm39)	S309P	probably benign	Het
Orm2	T	C	4: 63,281,263 (GRCm39)	F67S	possibly damaging	Het
Pex5	A	G	6: 124,382,142 (GRCm39)	S180P	probably benign	Het
Phf14	G	C	6: 11,992,061 (GRCm39)	G746R	probably damaging	Het
Pkm	T	A	9: 59,575,914 (GRCm39)	V110E	probably damaging	Het
Plekha6	T	G	1: 133,192,425 (GRCm39)	N78K	probably damaging	Het
Plxna2	G	A	1: 194,472,483 (GRCm39)	V1076I	probably benign	Het
Polq	C	A	16: 36,882,181 (GRCm39)	D1448E	probably damaging	Het
Pot1b	T	C	17: 55,994,895 (GRCm39)	T256A	probably benign	Het
Prkch	C	T	12: 73,749,538 (GRCm39)	T377I	possibly damaging	Het
Prl3c1	A	C	13: 27,383,168 (GRCm39)		probably benign	Het
Prl7b1	A	C	13: 27,786,755 (GRCm39)	V158G	possibly damaging	Het
Prss22	T	C	17: 24,212,955 (GRCm39)	S261G	probably damaging	Het
Psd	T	C	19: 46,309,541 (GRCm39)		probably benign	Het
Rbm6	T	G	9: 107,729,993 (GRCm39)	R218S	probably damaging	Het
Rnf213	T	A	11: 119,325,568 (GRCm39)	S1491T		Het
Rsf1	T	C	7: 97,311,132 (GRCm39)	S621P		Het
Runx1	C	A	16: 92,402,544 (GRCm39)	*466L	probably null	Het
Samd4	A	G	14: 47,254,135 (GRCm39)	I200V	probably benign	Het
Sdsl	C	T	5: 120,597,584 (GRCm39)	C241Y	probably benign	Het
Selenon	T	C	4: 134,278,725 (GRCm39)		probably benign	Het
Setx	C	T	2: 29,035,702 (GRCm39)	P729L	possibly damaging	Het
Sf1	C	T	19: 6,418,396 (GRCm39)	Q55*	probably null	Het
Slc12a5	A	T	2: 164,835,611 (GRCm39)	N833I	probably damaging	Het
Slc1a4	T	C	11: 20,282,286 (GRCm39)	R63G	probably damaging	Het
Tmeff2	G	T	1: 51,220,996 (GRCm39)	A324S	probably benign	Het
Tmem217	A	G	17: 29,745,466 (GRCm39)	I88T	possibly damaging	Het
Tnfsf8	A	T	4: 63,779,115 (GRCm39)	I61N	probably benign	Het
Tpbgl	G	T	7: 99,274,774 (GRCm39)	A361E	probably damaging	Het
Trhde	T	A	10: 114,322,911 (GRCm39)	E667V	probably benign	Het
Unc13b	A	G	4: 43,263,568 (GRCm39)	T1598A	probably benign	Het
Vmn2r73	A	T	7: 85,507,510 (GRCm39)	C601S	probably benign	Het
Zfp873	C	A	10: 81,896,713 (GRCm39)	H481Q	probably damaging	Het

Other mutations in Psg18

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01458:Psg18	APN	7	18,088,741 (GRCm39)	start codon destroyed	probably null	0.99
IGL01748:Psg18	APN	7	18,087,476 (GRCm39)	missense	probably benign	0.05
IGL01767:Psg18	APN	7	18,087,322 (GRCm39)	missense	possibly damaging	0.80
IGL02727:Psg18	APN	7	18,079,875 (GRCm39)	missense	probably damaging	1.00
IGL02744:Psg18	APN	7	18,083,327 (GRCm39)	missense	probably benign	0.38
G1Funyon:Psg18	UTSW	7	18,087,302 (GRCm39)	missense	probably damaging	0.99
PIT4466001:Psg18	UTSW	7	18,083,241 (GRCm39)	missense	probably benign	0.30
R0331:Psg18	UTSW	7	18,087,233 (GRCm39)	missense	probably benign	0.03
R1077:Psg18	UTSW	7	18,085,000 (GRCm39)	missense	possibly damaging	0.84
R1171:Psg18	UTSW	7	18,080,004 (GRCm39)	missense	probably benign	0.10
R1173:Psg18	UTSW	7	18,088,742 (GRCm39)	start codon destroyed	probably null	0.97
R1234:Psg18	UTSW	7	18,083,115 (GRCm39)	missense	probably damaging	1.00
R1553:Psg18	UTSW	7	18,087,406 (GRCm39)	missense	probably benign	0.19
R1632:Psg18	UTSW	7	18,084,824 (GRCm39)	missense	probably benign	0.02
R2108:Psg18	UTSW	7	18,084,799 (GRCm39)	missense	probably damaging	1.00
R2439:Psg18	UTSW	7	18,080,044 (GRCm39)	missense	probably benign	0.24
R3032:Psg18	UTSW	7	18,084,904 (GRCm39)	missense	probably benign	0.01
R3053:Psg18	UTSW	7	18,083,118 (GRCm39)	missense	probably damaging	1.00
R3432:Psg18	UTSW	7	18,083,096 (GRCm39)	missense	possibly damaging	0.61
R3725:Psg18	UTSW	7	18,088,748 (GRCm39)	start gained	probably benign
R4479:Psg18	UTSW	7	18,084,787 (GRCm39)	missense	probably benign	0.01
R4480:Psg18	UTSW	7	18,084,787 (GRCm39)	missense	probably benign	0.01
R4846:Psg18	UTSW	7	18,084,711 (GRCm39)	nonsense	probably null
R4858:Psg18	UTSW	7	18,087,409 (GRCm39)	missense	possibly damaging	0.49
R5010:Psg18	UTSW	7	18,083,279 (GRCm39)	missense	probably damaging	1.00
R5225:Psg18	UTSW	7	18,079,874 (GRCm39)	missense	probably damaging	1.00
R5450:Psg18	UTSW	7	18,087,350 (GRCm39)	missense	probably benign	0.32
R5526:Psg18	UTSW	7	18,083,273 (GRCm39)	missense	probably damaging	1.00
R5840:Psg18	UTSW	7	18,080,527 (GRCm39)	intron	probably benign
R6409:Psg18	UTSW	7	18,087,446 (GRCm39)	missense	probably benign
R7164:Psg18	UTSW	7	18,084,862 (GRCm39)	missense	possibly damaging	0.89
R7276:Psg18	UTSW	7	18,079,909 (GRCm39)	missense	probably damaging	0.99
R7768:Psg18	UTSW	7	18,079,953 (GRCm39)	missense	probably damaging	1.00
R8700:Psg18	UTSW	7	18,087,550 (GRCm39)	missense	probably damaging	1.00
R8982:Psg18	UTSW	7	18,083,300 (GRCm39)	missense	probably benign	0.20
R9042:Psg18	UTSW	7	18,083,047 (GRCm39)	missense	probably benign	0.44
R9054:Psg18	UTSW	7	18,087,450 (GRCm39)	missense	possibly damaging	0.82
R9442:Psg18	UTSW	7	18,083,185 (GRCm39)	nonsense	probably null
R9538:Psg18	UTSW	7	18,084,713 (GRCm39)	missense	probably benign	0.01
R9689:Psg18	UTSW	7	18,084,880 (GRCm39)	missense	probably benign	0.00
Z1176:Psg18	UTSW	7	18,088,712 (GRCm39)	missense	probably benign	0.07
Z1177:Psg18	UTSW	7	18,083,123 (GRCm39)	missense	probably benign	0.10
Z1177:Psg18	UTSW	7	18,083,040 (GRCm39)	missense	probably benign	0.30

Predicted Primers

PCR Primer
(F):5'- ATGCTCAGTCCCCAACATGG -3'
(R):5'- CACCCCAAGTGTATGAAGGAG -3'

Sequencing Primer
(F):5'- TGGAGACACAATACAGAGGGAAAG -3'
(R):5'- CTACGTGTTGACAATATGCCAGAG -3'

Posted On

2020-07-28