Incidental Mutation 'R8259:Eml1'
ID 640460
Institutional Source Beutler Lab
Gene Symbol Eml1
Ensembl Gene ENSMUSG00000058070
Gene Name echinoderm microtubule associated protein like 1
Synonyms 1110008N23Rik, heco, A930030P13Rik, ELP79
MMRRC Submission 067650-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.177) question?
Stock # R8259 (G1)
Quality Score 225.009
Status Validated
Chromosome 12
Chromosomal Location 108337265-108505835 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 108476458 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Phenylalanine at position 283 (I283F)
Ref Sequence ENSEMBL: ENSMUSP00000105486 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054955] [ENSMUST00000109857] [ENSMUST00000109860] [ENSMUST00000130999]
AlphaFold Q05BC3
Predicted Effect probably damaging
Transcript: ENSMUST00000054955
AA Change: I252F

PolyPhen 2 Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000057209
Gene: ENSMUSG00000058070
AA Change: I252F

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 228 277 5.6e-3 SMART
WD40 280 325 2.21e1 SMART
WD40 328 367 4.46e-1 SMART
WD40 375 413 5.73e0 SMART
WD40 416 456 5.75e-1 SMART
WD40 496 539 4.24e-3 SMART
WD40 542 580 1.37e2 SMART
WD40 583 622 1.7e-2 SMART
WD40 629 668 1.58e-2 SMART
Blast:WD40 694 735 7e-20 BLAST
WD40 741 781 2.96e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000109857
AA Change: I269F

PolyPhen 2 Score 0.780 (Sensitivity: 0.85; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000105483
Gene: ENSMUSG00000058070
AA Change: I269F

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 245 294 5.6e-3 SMART
WD40 297 342 2.21e1 SMART
WD40 345 384 4.46e-1 SMART
WD40 392 430 5.73e0 SMART
WD40 433 473 5.75e-1 SMART
WD40 513 556 4.24e-3 SMART
WD40 559 597 1.37e2 SMART
WD40 600 639 1.7e-2 SMART
WD40 646 685 1.58e-2 SMART
Blast:WD40 711 752 7e-20 BLAST
WD40 758 798 2.96e-2 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000109860
AA Change: I283F

PolyPhen 2 Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000105486
Gene: ENSMUSG00000058070
AA Change: I283F

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
Pfam:HELP 184 258 1.8e-35 PFAM
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
WD40 660 699 1.58e-2 SMART
Blast:WD40 725 766 7e-20 BLAST
WD40 772 812 2.96e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000130999
AA Change: I283F

PolyPhen 2 Score 0.950 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000118325
Gene: ENSMUSG00000058070
AA Change: I283F

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency 100% (82/82)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Human echinoderm microtubule-associated protein-like is a strong candidate for the Usher syndrome type 1A gene. Usher syndromes (USHs) are a group of genetic disorders consisting of congenital deafness, retinitis pigmentosa, and vestibular dysfunction of variable onset and severity depending on the genetic type. The disease process in USHs involves the entire brain and is not limited to the posterior fossa or auditory and visual systems. The USHs are catagorized as type I (USH1A, USH1B, USH1C, USH1D, USH1E and USH1F), type II (USH2A and USH2B) and type III (USH3). The type I is the most severe form. Gene loci responsible for these three types are all mapped. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a spontaneous mutation exhibit subcortical band heterotopia associated with seizures, developmental delay and behavioral deficits. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 A T 7: 119,939,422 (GRCm39) H272L probably benign Het
Abcg5 T G 17: 84,983,523 (GRCm39) T144P possibly damaging Het
Adam34 G A 8: 44,104,646 (GRCm39) S333L probably benign Het
Adcy6 A G 15: 98,498,919 (GRCm39) F294S probably damaging Het
Adhfe1 A G 1: 9,628,417 (GRCm39) N263S probably null Het
Aebp2 A T 6: 140,583,453 (GRCm39) Q309L possibly damaging Het
Akap7 A G 10: 25,047,054 (GRCm39) Y281H probably damaging Het
Aplf T C 6: 87,606,987 (GRCm39) R476G probably benign Het
Atg2a G A 19: 6,299,859 (GRCm39) A588T probably damaging Het
Birc6 A G 17: 74,905,073 (GRCm39) T1289A probably benign Het
Cacna1d A G 14: 29,773,475 (GRCm39) S1759P probably benign Het
Calcoco1 T C 15: 102,624,228 (GRCm39) D236G probably damaging Het
Camsap2 A T 1: 136,208,077 (GRCm39) D470E probably benign Het
Capn8 G T 1: 182,392,698 (GRCm39) V25L probably benign Het
Card10 A G 15: 78,660,884 (GRCm39) V1041A probably damaging Het
Ccr1 T A 9: 123,764,119 (GRCm39) H137L probably damaging Het
Cdh23 A T 10: 60,151,435 (GRCm39) D2483E probably damaging Het
Chd2 G T 7: 73,085,532 (GRCm39) Q1701K probably benign Het
Ckmt2 T A 13: 92,007,335 (GRCm39) R286S probably damaging Het
Clhc1 G A 11: 29,503,746 (GRCm39) R54Q probably benign Het
Cntnap3 T A 13: 64,935,681 (GRCm39) D394V probably damaging Het
Comp A G 8: 70,831,704 (GRCm39) D441G probably damaging Het
Cyp20a1 G A 1: 60,391,330 (GRCm39) probably null Het
Cyp27a1 A T 1: 74,771,214 (GRCm39) D133V probably benign Het
Cyp2a12 C T 7: 26,732,083 (GRCm39) Q275* probably null Het
Dnhd1 A T 7: 105,343,995 (GRCm39) I1780L probably benign Het
Dpy19l2 A G 9: 24,580,702 (GRCm39) V213A probably benign Het
Ep300 A G 15: 81,523,218 (GRCm39) T1281A unknown Het
Ercc6l2 G A 13: 64,020,285 (GRCm39) E803K Het
Fat3 A G 9: 15,901,887 (GRCm39) V3046A possibly damaging Het
Fbxw20 A G 9: 109,063,763 (GRCm39) V3A probably benign Het
Fcgr2b A G 1: 170,795,702 (GRCm39) S76P possibly damaging Het
Fgg C T 3: 82,917,477 (GRCm39) Q169* probably null Het
Flnb A G 14: 7,889,183 (GRCm38) Y511C probably damaging Het
Ggt5 G A 10: 75,450,666 (GRCm39) V558I probably benign Het
Gm4779 G C X: 100,837,390 (GRCm39) T171S possibly damaging Het
Greb1 A T 12: 16,774,925 (GRCm39) C157* probably null Het
Grid2ip A G 5: 143,348,344 (GRCm39) E145G probably benign Het
Hdac11 T A 6: 91,149,210 (GRCm39) V238E probably damaging Het
Herc2 A G 7: 55,855,638 (GRCm39) D3858G probably damaging Het
Hoxc4 A G 15: 102,943,165 (GRCm39) Y6C probably damaging Het
Incenp A G 19: 9,870,993 (GRCm39) L212P unknown Het
Incenp G C 19: 9,871,005 (GRCm39) T208R unknown Het
Mctp1 T A 13: 76,949,666 (GRCm39) probably null Het
Megf8 T C 7: 25,057,848 (GRCm39) M2095T probably benign Het
Mroh2b G A 15: 4,941,391 (GRCm39) V308I probably benign Het
Muc1 T A 3: 89,139,341 (GRCm39) H580Q probably damaging Het
Naip6 A T 13: 100,452,920 (GRCm39) M47K probably benign Het
Nectin3 C T 16: 46,256,754 (GRCm39) R419Q probably benign Het
Nlrp4g T G 9: 124,353,392 (GRCm38) Y579D noncoding transcript Het
Nrxn1 C A 17: 90,471,249 (GRCm39) R1260L probably damaging Het
Nynrin A G 14: 56,100,815 (GRCm39) I202V possibly damaging Het
Or14j7 T C 17: 38,234,847 (GRCm39) L130P probably damaging Het
Or51e2 A G 7: 102,392,034 (GRCm39) Y59H probably damaging Het
Or5ac17 T C 16: 59,036,458 (GRCm39) I173V probably benign Het
Or5b98 T C 19: 12,931,727 (GRCm39) M258T possibly damaging Het
Pard3 G A 8: 128,098,021 (GRCm39) W354* probably null Het
Pcnx3 C T 19: 5,715,412 (GRCm39) G1946E probably damaging Het
Peak1 A G 9: 56,166,677 (GRCm39) V417A probably damaging Het
Prune2 A G 19: 17,189,672 (GRCm39) R3052G unknown Het
Prx T C 7: 27,218,808 (GRCm39) L1242P probably damaging Het
Pxylp1 A G 9: 96,707,633 (GRCm39) I183T probably benign Het
Ranbp2 A G 10: 58,291,755 (GRCm39) E254G probably benign Het
Ren1 C T 1: 133,278,534 (GRCm39) R31* probably null Het
Rhot2 C A 17: 26,058,864 (GRCm39) R512L probably benign Het
Rpa1 T C 11: 75,193,550 (GRCm39) N594D probably benign Het
Rpp14 T G 14: 8,090,526 (GRCm38) V150G probably null Het
Rxfp2 T A 5: 149,983,365 (GRCm39) I300K probably damaging Het
Sbno1 A T 5: 124,519,759 (GRCm39) V1173E probably damaging Het
Scarf1 T A 11: 75,414,689 (GRCm39) S486T probably damaging Het
Slc24a4 T C 12: 102,220,928 (GRCm39) V455A probably damaging Het
Slitrk1 A G 14: 109,148,653 (GRCm39) V686A probably benign Het
Spata31e2 T C 1: 26,721,562 (GRCm39) E1206G probably benign Het
Ston2 A T 12: 91,608,454 (GRCm39) I882N probably benign Het
Syne2 C A 12: 75,996,143 (GRCm39) Q2228K possibly damaging Het
Tcf20 A C 15: 82,736,474 (GRCm39) F1659C probably damaging Het
Tenm4 G A 7: 96,517,198 (GRCm39) G1430S probably damaging Het
Tlr12 C A 4: 128,511,492 (GRCm39) A253S probably benign Het
Tmem87a A G 2: 120,227,928 (GRCm39) F73S possibly damaging Het
Trpm1 G A 7: 63,918,777 (GRCm39) A1590T probably benign Het
Usp13 C T 3: 32,971,748 (GRCm39) Q743* probably null Het
Vmn1r184 T A 7: 25,966,686 (GRCm39) M144K probably benign Het
Wee2 A G 6: 40,421,114 (GRCm39) D68G probably benign Het
Other mutations in Eml1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00770:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL00774:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL01358:Eml1 APN 12 108,480,727 (GRCm39) missense probably benign 0.05
IGL02316:Eml1 APN 12 108,501,018 (GRCm39) intron probably benign
IGL02346:Eml1 APN 12 108,503,700 (GRCm39) missense possibly damaging 0.87
IGL02480:Eml1 APN 12 108,487,955 (GRCm39) missense probably benign 0.32
IGL02513:Eml1 APN 12 108,496,571 (GRCm39) missense probably damaging 1.00
IGL02556:Eml1 APN 12 108,503,625 (GRCm39) missense probably benign 0.00
IGL02565:Eml1 APN 12 108,472,779 (GRCm39) missense probably damaging 1.00
IGL03217:Eml1 APN 12 108,501,201 (GRCm39) missense probably benign 0.31
bubble UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R0027:Eml1 UTSW 12 108,502,557 (GRCm39) missense possibly damaging 0.90
R0067:Eml1 UTSW 12 108,429,786 (GRCm39) missense possibly damaging 0.61
R0124:Eml1 UTSW 12 108,475,437 (GRCm39) missense probably damaging 1.00
R0124:Eml1 UTSW 12 108,472,867 (GRCm39) missense probably benign 0.00
R0730:Eml1 UTSW 12 108,496,585 (GRCm39) missense possibly damaging 0.79
R1566:Eml1 UTSW 12 108,438,151 (GRCm39) missense probably damaging 0.99
R1883:Eml1 UTSW 12 108,429,911 (GRCm39) missense probably damaging 0.97
R1927:Eml1 UTSW 12 108,504,476 (GRCm39) nonsense probably null
R1938:Eml1 UTSW 12 108,487,655 (GRCm39) missense possibly damaging 0.75
R2070:Eml1 UTSW 12 108,479,258 (GRCm39) missense probably damaging 1.00
R2311:Eml1 UTSW 12 108,503,675 (GRCm39) missense probably damaging 0.99
R2417:Eml1 UTSW 12 108,502,534 (GRCm39) missense probably benign 0.00
R3120:Eml1 UTSW 12 108,479,312 (GRCm39) missense probably benign 0.31
R4352:Eml1 UTSW 12 108,501,096 (GRCm39) intron probably benign
R4471:Eml1 UTSW 12 108,472,894 (GRCm39) intron probably benign
R4655:Eml1 UTSW 12 108,500,972 (GRCm39) missense probably damaging 1.00
R5077:Eml1 UTSW 12 108,472,871 (GRCm39) splice site probably benign
R5094:Eml1 UTSW 12 108,502,570 (GRCm39) missense probably benign 0.11
R5113:Eml1 UTSW 12 108,503,596 (GRCm39) missense possibly damaging 0.74
R5524:Eml1 UTSW 12 108,487,635 (GRCm39) missense probably damaging 0.99
R5775:Eml1 UTSW 12 108,472,813 (GRCm39) missense probably damaging 1.00
R6120:Eml1 UTSW 12 108,493,983 (GRCm39) missense probably damaging 1.00
R6224:Eml1 UTSW 12 108,480,767 (GRCm39) missense probably damaging 1.00
R6491:Eml1 UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R7035:Eml1 UTSW 12 108,475,493 (GRCm39) missense probably damaging 1.00
R7134:Eml1 UTSW 12 108,472,810 (GRCm39) missense probably benign 0.00
R7273:Eml1 UTSW 12 108,504,432 (GRCm39) missense possibly damaging 0.87
R7606:Eml1 UTSW 12 108,503,625 (GRCm39) missense probably benign 0.45
R7744:Eml1 UTSW 12 108,482,863 (GRCm39) missense probably benign
R7820:Eml1 UTSW 12 108,481,433 (GRCm39) missense possibly damaging 0.81
R8013:Eml1 UTSW 12 108,487,938 (GRCm39) missense probably benign 0.18
R8223:Eml1 UTSW 12 108,502,569 (GRCm39) missense probably benign 0.00
R8258:Eml1 UTSW 12 108,476,458 (GRCm39) missense probably damaging 0.97
R8399:Eml1 UTSW 12 108,504,390 (GRCm39) missense possibly damaging 0.91
R8427:Eml1 UTSW 12 108,496,580 (GRCm39) missense probably damaging 0.99
R9002:Eml1 UTSW 12 108,504,438 (GRCm39) missense probably damaging 1.00
R9220:Eml1 UTSW 12 108,480,702 (GRCm39) nonsense probably null
R9432:Eml1 UTSW 12 108,482,842 (GRCm39) missense probably benign 0.00
R9446:Eml1 UTSW 12 108,481,465 (GRCm39) missense probably damaging 0.98
R9500:Eml1 UTSW 12 108,493,958 (GRCm39) missense probably damaging 1.00
Z1088:Eml1 UTSW 12 108,503,718 (GRCm39) missense possibly damaging 0.80
Z1177:Eml1 UTSW 12 108,500,915 (GRCm39) missense probably damaging 1.00
Z1177:Eml1 UTSW 12 108,389,398 (GRCm39) start gained probably benign
Predicted Primers PCR Primer
(F):5'- TAAGGTTGGAAGTTCCCGAAAG -3'
(R):5'- TCAGTTTGCAGTGAGAGCC -3'

Sequencing Primer
(F):5'- AGGAAATCGGGCATTCTGATG -3'
(R):5'- TTTGCAGTGAGAGCCCCTGG -3'
Posted On 2020-07-28