Incidental Mutation 'R0096:Dnai2'
| ID |
64075 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dnai2
|
| Ensembl Gene |
ENSMUSG00000034706 |
| Gene Name |
dynein axonemal intermediate chain 2 |
| Synonyms |
C030015H18Rik, b2b3405Clo, Dnaic2 |
| MMRRC Submission |
038382-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.230)
|
| Stock # |
R0096 (G1)
|
| Quality Score |
108 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
114618234-114648715 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to C
at 114645158 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Alanine
at position 531
(D531A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000090126
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000069325]
[ENSMUST00000092469]
[ENSMUST00000141762]
|
| AlphaFold |
A2AC93 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000069325
AA Change: D531A
PolyPhen 2
Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000065787
Gene: ENSMUSG00000034706
AA Change: D531A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
127 |
146 |
N/A |
INTRINSIC |
|
WD40
|
206 |
245 |
2.86e0 |
SMART |
|
WD40
|
248 |
293 |
3.33e-1 |
SMART |
|
WD40
|
353 |
392 |
7.92e-3 |
SMART |
|
WD40
|
396 |
436 |
2.05e1 |
SMART |
|
WD40
|
441 |
480 |
4.93e1 |
SMART |
|
low complexity region
|
519 |
545 |
N/A |
INTRINSIC |
|
low complexity region
|
559 |
608 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000092469
AA Change: D531A
PolyPhen 2
Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000090126
Gene: ENSMUSG00000034706
AA Change: D531A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
127 |
146 |
N/A |
INTRINSIC |
|
WD40
|
206 |
245 |
2.86e0 |
SMART |
|
WD40
|
248 |
293 |
3.33e-1 |
SMART |
|
WD40
|
353 |
392 |
7.92e-3 |
SMART |
|
WD40
|
396 |
436 |
2.05e1 |
SMART |
|
WD40
|
441 |
480 |
4.93e1 |
SMART |
|
low complexity region
|
519 |
545 |
N/A |
INTRINSIC |
|
low complexity region
|
559 |
608 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130692
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136403
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000141762
AA Change: D519A
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| SMART Domains |
Protein: ENSMUSP00000114700
Gene: ENSMUSG00000034706
AA Change: D519A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
127 |
146 |
N/A |
INTRINSIC |
|
WD40
|
206 |
245 |
2.86e0 |
SMART |
|
WD40
|
248 |
293 |
3.33e-1 |
SMART |
|
WD40
|
353 |
392 |
7.92e-3 |
SMART |
|
WD40
|
396 |
436 |
2.05e1 |
SMART |
|
low complexity region
|
458 |
476 |
N/A |
INTRINSIC |
|
low complexity region
|
507 |
533 |
N/A |
INTRINSIC |
|
low complexity region
|
548 |
562 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144872
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.0%
- 20x: 93.5%
|
| Validation Efficiency |
100% (69/69) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the dynein intermediate chain family, and is part of the dynein complex of respiratory cilia and sperm flagella. Mutations in this gene are associated with primary ciliary dyskinesia type 9. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Mar 2010]
PHENOTYPE: Mice homozygous for an ENU-induced mutation exhibit situs inversus totalis and immotile respiratory cilia. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 53 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933405L10Rik |
A |
T |
8: 106,435,563 (GRCm39) |
|
probably null |
Het |
| Adamts3 |
G |
A |
5: 89,849,576 (GRCm39) |
Q615* |
probably null |
Het |
| Adamtsl3 |
T |
A |
7: 82,114,907 (GRCm39) |
|
probably benign |
Het |
| Anks1b |
T |
C |
10: 89,909,924 (GRCm39) |
S48P |
possibly damaging |
Het |
| Aoc1l2 |
A |
C |
6: 48,908,122 (GRCm39) |
Q374P |
probably damaging |
Het |
| Arfip2 |
T |
A |
7: 105,287,437 (GRCm39) |
K94N |
probably damaging |
Het |
| Arhgap42 |
G |
T |
9: 9,009,314 (GRCm39) |
N524K |
probably damaging |
Het |
| Arhgef28 |
T |
G |
13: 98,067,762 (GRCm39) |
T1388P |
probably damaging |
Het |
| Arid4b |
T |
C |
13: 14,303,779 (GRCm39) |
V68A |
probably benign |
Het |
| BC005537 |
T |
C |
13: 24,989,923 (GRCm39) |
F129L |
probably damaging |
Het |
| Capn3 |
A |
T |
2: 120,333,010 (GRCm39) |
H592L |
possibly damaging |
Het |
| Dglucy |
A |
T |
12: 100,804,910 (GRCm39) |
I134F |
possibly damaging |
Het |
| Dhh |
T |
A |
15: 98,791,869 (GRCm39) |
M380L |
probably benign |
Het |
| Dthd1 |
A |
T |
5: 63,000,383 (GRCm39) |
R568S |
possibly damaging |
Het |
| Efr3a |
A |
G |
15: 65,727,290 (GRCm39) |
N613S |
probably damaging |
Het |
| Epb41l5 |
T |
A |
1: 119,551,641 (GRCm39) |
|
probably benign |
Het |
| Ermp1 |
A |
G |
19: 29,608,788 (GRCm39) |
Y164H |
possibly damaging |
Het |
| Fam120c |
CCAGCAGCAGCAGCAGCA |
CCAGCAGCAGCAGCA |
X: 150,127,341 (GRCm39) |
|
probably benign |
Het |
| Fbrs |
C |
T |
7: 127,088,659 (GRCm39) |
A145V |
probably damaging |
Het |
| Gm4736 |
T |
C |
6: 132,092,569 (GRCm39) |
|
noncoding transcript |
Het |
| Gm9873 |
A |
T |
2: 168,863,029 (GRCm39) |
|
noncoding transcript |
Het |
| Grik1 |
T |
C |
16: 87,831,114 (GRCm39) |
M219V |
possibly damaging |
Het |
| Gtsf1l |
C |
T |
2: 162,929,456 (GRCm39) |
C9Y |
probably damaging |
Het |
| Itih5 |
G |
A |
2: 10,256,189 (GRCm39) |
R885Q |
probably benign |
Het |
| Kdm4c |
A |
G |
4: 74,275,580 (GRCm39) |
E752G |
probably damaging |
Het |
| Ksr1 |
A |
G |
11: 78,929,073 (GRCm39) |
|
probably benign |
Het |
| Lama1 |
T |
A |
17: 68,112,408 (GRCm39) |
F2283I |
probably benign |
Het |
| Luc7l3 |
A |
G |
11: 94,192,320 (GRCm39) |
|
probably benign |
Het |
| Lypd8 |
A |
T |
11: 58,277,583 (GRCm39) |
M122L |
probably benign |
Het |
| Map1a |
A |
G |
2: 121,131,986 (GRCm39) |
E696G |
probably damaging |
Het |
| Mrps34 |
A |
G |
17: 25,114,643 (GRCm39) |
D110G |
probably damaging |
Het |
| Myh11 |
T |
A |
16: 14,022,231 (GRCm39) |
K1710M |
possibly damaging |
Het |
| Myo1d |
A |
G |
11: 80,375,158 (GRCm39) |
L972P |
probably damaging |
Het |
| Nos1ap |
T |
C |
1: 170,156,816 (GRCm39) |
D214G |
probably damaging |
Het |
| Or4c119 |
A |
T |
2: 88,986,640 (GRCm39) |
M293K |
probably benign |
Het |
| Or8b46 |
A |
T |
9: 38,450,832 (GRCm39) |
I214F |
probably damaging |
Het |
| Pate4 |
T |
G |
9: 35,523,130 (GRCm39) |
T5P |
probably damaging |
Het |
| Pygl |
A |
T |
12: 70,237,940 (GRCm39) |
|
probably benign |
Het |
| Samd4 |
A |
T |
14: 47,301,754 (GRCm39) |
M252L |
possibly damaging |
Het |
| Serpinb1c |
T |
A |
13: 33,070,266 (GRCm39) |
|
probably benign |
Het |
| Sis |
A |
T |
3: 72,835,600 (GRCm39) |
W921R |
probably damaging |
Het |
| Skint5 |
A |
T |
4: 113,454,965 (GRCm39) |
|
probably benign |
Het |
| Slc27a6 |
T |
C |
18: 58,731,829 (GRCm39) |
|
probably benign |
Het |
| Sycp2 |
G |
T |
2: 178,045,528 (GRCm39) |
Q31K |
probably damaging |
Het |
| Taar7f |
A |
G |
10: 23,926,152 (GRCm39) |
M249V |
probably benign |
Het |
| Tarm1 |
T |
C |
7: 3,546,067 (GRCm39) |
T79A |
probably benign |
Het |
| Tektl1 |
T |
A |
10: 78,584,539 (GRCm39) |
I328L |
probably benign |
Het |
| Trf |
A |
G |
9: 103,099,358 (GRCm39) |
F300L |
probably damaging |
Het |
| Vmn1r69 |
T |
A |
7: 10,313,985 (GRCm39) |
I170F |
probably damaging |
Het |
| Vmn2r105 |
A |
G |
17: 20,447,741 (GRCm39) |
F361S |
possibly damaging |
Het |
| Vmn2r79 |
A |
G |
7: 86,686,527 (GRCm39) |
Y636C |
probably damaging |
Het |
| Wdr59 |
T |
C |
8: 112,231,005 (GRCm39) |
N68D |
probably damaging |
Het |
| Zfp345 |
T |
A |
2: 150,314,220 (GRCm39) |
H439L |
probably damaging |
Het |
|
| Other mutations in Dnai2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01359:Dnai2
|
APN |
11 |
114,642,614 (GRCm39) |
missense |
probably benign |
0.37 |
|
IGL01548:Dnai2
|
APN |
11 |
114,643,768 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02719:Dnai2
|
APN |
11 |
114,642,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03236:Dnai2
|
APN |
11 |
114,648,075 (GRCm39) |
unclassified |
probably benign |
|
|
R0096:Dnai2
|
UTSW |
11 |
114,645,158 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0305:Dnai2
|
UTSW |
11 |
114,643,720 (GRCm39) |
missense |
probably benign |
0.09 |
|
R0472:Dnai2
|
UTSW |
11 |
114,636,015 (GRCm39) |
splice site |
probably benign |
|
|
R0711:Dnai2
|
UTSW |
11 |
114,645,158 (GRCm39) |
missense |
probably benign |
0.04 |
|
R1756:Dnai2
|
UTSW |
11 |
114,641,206 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1861:Dnai2
|
UTSW |
11 |
114,643,777 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R1916:Dnai2
|
UTSW |
11 |
114,623,749 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R1981:Dnai2
|
UTSW |
11 |
114,623,755 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1983:Dnai2
|
UTSW |
11 |
114,626,682 (GRCm39) |
splice site |
probably null |
|
|
R2430:Dnai2
|
UTSW |
11 |
114,648,012 (GRCm39) |
unclassified |
probably benign |
|
|
R2510:Dnai2
|
UTSW |
11 |
114,647,993 (GRCm39) |
unclassified |
probably benign |
|
|
R3001:Dnai2
|
UTSW |
11 |
114,641,297 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3002:Dnai2
|
UTSW |
11 |
114,641,297 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3113:Dnai2
|
UTSW |
11 |
114,642,756 (GRCm39) |
splice site |
probably null |
|
|
R3803:Dnai2
|
UTSW |
11 |
114,629,551 (GRCm39) |
missense |
probably benign |
|
|
R3874:Dnai2
|
UTSW |
11 |
114,623,781 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4853:Dnai2
|
UTSW |
11 |
114,635,917 (GRCm39) |
missense |
probably benign |
0.03 |
|
R5267:Dnai2
|
UTSW |
11 |
114,631,293 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6008:Dnai2
|
UTSW |
11 |
114,643,816 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6024:Dnai2
|
UTSW |
11 |
114,643,734 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R6819:Dnai2
|
UTSW |
11 |
114,635,917 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7053:Dnai2
|
UTSW |
11 |
114,629,521 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7143:Dnai2
|
UTSW |
11 |
114,645,076 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R7208:Dnai2
|
UTSW |
11 |
114,647,988 (GRCm39) |
missense |
unknown |
|
|
R7275:Dnai2
|
UTSW |
11 |
114,648,054 (GRCm39) |
missense |
unknown |
|
|
R7463:Dnai2
|
UTSW |
11 |
114,645,232 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7779:Dnai2
|
UTSW |
11 |
114,645,235 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R7899:Dnai2
|
UTSW |
11 |
114,629,456 (GRCm39) |
missense |
probably benign |
0.21 |
|
R8443:Dnai2
|
UTSW |
11 |
114,645,275 (GRCm39) |
missense |
unknown |
|
|
R8944:Dnai2
|
UTSW |
11 |
114,641,302 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R9081:Dnai2
|
UTSW |
11 |
114,629,493 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9182:Dnai2
|
UTSW |
11 |
114,623,839 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9335:Dnai2
|
UTSW |
11 |
114,625,489 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9380:Dnai2
|
UTSW |
11 |
114,635,989 (GRCm39) |
missense |
probably benign |
0.12 |
|
RF012:Dnai2
|
UTSW |
11 |
114,641,242 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCTCTGGCATAGATTCTCCTGCACA -3'
(R):5'- GCCCTCAAAGAACCTGATGCCTCAT -3'
Sequencing Primer
(F):5'- gcgacccatgtccatagaag -3'
(R):5'- CTATTGGCTCAAGGTTACCCAGG -3'
|
| Posted On |
2013-08-06 |
Incidental Mutation