Mutagenetix > Incidental Mutations

Incidental Mutation 'R8305:Ttc23'

641002

Institutional Source

Beutler Lab

Gene Symbol

Ttc23

Ensembl Gene

ENSMUSG00000030555

Gene Name

tetratricopeptide repeat domain 23

Synonyms

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R8305 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

67647410-67762912 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 67662387 bp

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Alanine at position 14 (D14A)

Ref Sequence

ENSEMBL: ENSMUSP00000032774 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032774] [ENSMUST00000107470] [ENSMUST00000107471]

Predicted Effect

probably damaging
Transcript: ENSMUST00000032774
AA Change: D14A

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000032774
Gene: ENSMUSG00000030555
AA Change: D14A

Domain	Start	End	E-Value	Type
Blast:TPR	45	78	5e-10	BLAST
SCOP:d1a17__	50	214	6e-8	SMART
Blast:TPR	87	121	3e-10	BLAST
Blast:TPR	137	170	3e-8	BLAST
Blast:TPR	186	219	1e-6	BLAST
low complexity region	310	323	N/A	INTRINSIC
Blast:TPR	398	431	5e-8	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000107470
AA Change: D14A

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000103094
Gene: ENSMUSG00000030555
AA Change: D14A

Domain	Start	End	E-Value	Type
Blast:TPR	45	78	4e-10	BLAST
Blast:TPR	87	121	2e-10	BLAST
Blast:TPR	137	170	3e-8	BLAST
Pfam:TPR_12	185	257	5.9e-10	PFAM
low complexity region	268	281	N/A	INTRINSIC
Blast:TPR	356	389	5e-8	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000107471
AA Change: D14A

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000103095
Gene: ENSMUSG00000030555
AA Change: D14A

Domain	Start	End	E-Value	Type
Blast:TPR	45	78	4e-10	BLAST
Blast:TPR	87	121	2e-10	BLAST
Blast:TPR	137	170	3e-8	BLAST
Pfam:TPR_12	185	257	5.9e-10	PFAM
low complexity region	268	281	N/A	INTRINSIC
Blast:TPR	356	389	5e-8	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930578I06Rik	C	T	14: 63,971,395	E243K	possibly damaging	Het
Accsl	A	T	2: 93,866,078	H58Q	probably benign	Het
Actl7a	T	A	4: 56,743,744	F90L	probably benign	Het
Adam5	G	A	8: 24,810,703	A270V	possibly damaging	Het
Angptl3	A	G	4: 99,031,311	T103A	probably damaging	Het
Ankhd1	T	C	18: 36,647,166	L1757P	possibly damaging	Het
Apoa4	T	A	9: 46,241,155	M1K	probably null	Het
Arih1	T	A	9: 59,396,487	Q445L	probably benign	Het
Asb14	A	T	14: 26,912,097	I420L	probably benign	Het
Bbs2	A	C	8: 94,074,325	V626G	probably damaging	Het
BC089597	T	A	10: 127,876,995	D287E	probably damaging	Het
Cep290	C	A	10: 100,544,934	A1678D	probably benign	Het
Cilp	G	A	9: 65,279,004	G794S	probably damaging	Het
Clca3b	T	A	3: 144,825,937	N702I	probably damaging	Het
Col24a1	T	C	3: 145,474,182	V1143A	probably benign	Het
Cux1	T	C	5: 136,360,009	T223A	probably benign	Het
Defa30	A	T	8: 21,135,459	T80S	probably benign	Het
Dennd1a	G	A	2: 37,858,081	L375F	probably damaging	Het
Dnajc6	C	T	4: 101,623,787	T675I	probably damaging	Het
Emc9	A	G	14: 55,585,099	V4A	probably damaging	Het
Enpp3	C	G	10: 24,824,929		probably null	Het
Fam117b	A	G	1: 59,913,623	T154A	probably benign	Het
Filip1	G	T	9: 79,820,475	Y287*	probably null	Het
Flt3	T	C	5: 147,348,054	D751G	probably damaging	Het
Frem1	T	A	4: 82,999,989	Q572L	probably benign	Het
Gja10	G	A	4: 32,602,441		probably benign	Het
Gm7356	T	A	17: 14,001,437	Y110F	probably benign	Het
Igf2r	T	C	17: 12,733,860	K233R	probably benign	Het
Igkv9-129	A	T	6: 67,840,222	E103D	probably benign	Het
Igsf11	C	A	16: 39,007,224	T48N	probably damaging	Het
Itpkc	A	T	7: 27,214,519	Y506N	probably damaging	Het
Kat2a	A	C	11: 100,709,478	M357R	possibly damaging	Het
Kbtbd12	T	C	6: 88,618,150	R233G	possibly damaging	Het
Kcnd2	T	A	6: 21,726,198	C563*	probably null	Het
Kcnu1	T	C	8: 25,891,990	V456A	probably benign	Het
Kif24	A	G	4: 41,428,825	V45A	probably damaging	Het
Map3k19	T	A	1: 127,817,270	E1177D		Het
Mdn1	G	T	4: 32,725,107	L2575F	probably benign	Het
Mga	T	A	2: 119,946,319	M1569K	possibly damaging	Het
Mvk	T	C	5: 114,450,779	Y161H	probably damaging	Het
Olfr119	T	A	17: 37,701,498	M276K	probably benign	Het
Olfr134	C	A	17: 38,175,573	T163K	probably damaging	Het
Olfr301	G	T	7: 86,412,779	C139F	probably damaging	Het
Pcdhb14	T	A	18: 37,450,022	V727E	possibly damaging	Het
Pcsk7	T	G	9: 45,910,409	V167G	probably damaging	Het
Plin5	T	C	17: 56,115,221	D146G	probably benign	Het
Plxna4	C	T	6: 32,211,065	G879R	possibly damaging	Het
Prss58	C	T	6: 40,895,660	A171T	probably benign	Het
Pum1	A	G	4: 130,771,920	I1016V	probably benign	Het
Rbm43	A	G	2: 51,926,700	V85A	probably damaging	Het
RP23-56A14.9	A	G	7: 142,135,623	C138R	unknown	Het
Rptor	T	A	11: 119,811,986	L393Q	probably damaging	Het
Sbf2	T	G	7: 110,371,618	H857P	possibly damaging	Het
Scn8a	A	C	15: 101,040,506	T1919P	probably benign	Het
Sema6b	C	T	17: 56,127,084	G377E	probably damaging	Het
Senp7	T	A	16: 56,155,240	D436E	probably damaging	Het
Slc6a17	T	A	3: 107,473,585	I535F	probably benign	Het
Sptbn2	T	A	19: 4,729,130	S281T	possibly damaging	Het
Stt3b	T	C	9: 115,254,931	I392M	probably damaging	Het
Tfap2b	T	C	1: 19,226,436	V201A	possibly damaging	Het
Usp32	A	T	11: 85,032,185	L636I	possibly damaging	Het
Vgll4	G	T	6: 114,890,652	H79Q	probably damaging	Het
Vps13d	A	G	4: 145,092,288	I3047T		Het
Zan	T	C	5: 137,450,551	E1680G	unknown	Het

Other mutations in Ttc23

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02852:Ttc23	APN	7	67667155	unclassified	probably benign
IGL03257:Ttc23	APN	7	67711378	missense	probably damaging	1.00
IGL03365:Ttc23	APN	7	67662337	utr 5 prime	probably benign
IGL03404:Ttc23	APN	7	67678897	missense	probably damaging	0.99
F5770:Ttc23	UTSW	7	67709315	splice site	probably benign
PIT4445001:Ttc23	UTSW	7	67667213	missense	probably damaging	1.00
PIT4791001:Ttc23	UTSW	7	67662387	missense	probably damaging	1.00
R0295:Ttc23	UTSW	7	67669852	unclassified	probably benign
R0316:Ttc23	UTSW	7	67679073	critical splice donor site	probably null
R0336:Ttc23	UTSW	7	67662483	missense	probably benign	0.01
R1456:Ttc23	UTSW	7	67667154	unclassified	probably benign
R1543:Ttc23	UTSW	7	67678995	missense	probably benign	0.01
R1662:Ttc23	UTSW	7	67725321	splice site	probably null
R1708:Ttc23	UTSW	7	67667176	missense	probably damaging	0.99
R1857:Ttc23	UTSW	7	67679073	critical splice donor site	probably null
R2292:Ttc23	UTSW	7	67669787	missense	probably benign	0.08
R4471:Ttc23	UTSW	7	67670156	missense	probably benign	0.37
R6036:Ttc23	UTSW	7	67711366	missense	possibly damaging	0.85
R6036:Ttc23	UTSW	7	67711366	missense	possibly damaging	0.85
R6841:Ttc23	UTSW	7	67669728	missense	possibly damaging	0.91
R7690:Ttc23	UTSW	7	67670170	missense	possibly damaging	0.76
RF009:Ttc23	UTSW	7	67726029	missense	possibly damaging	0.61
X0021:Ttc23	UTSW	7	67670131	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCGAATGCCCCTTTGAAATAAAATG -3'
(R):5'- ATGGCTGCTATGTGACCCAG -3'

Sequencing Primer
(F):5'- CCTAGACGTTAACCTAGACT -3'
(R):5'- ATGGCTGCCATGTGACC -3'

Posted On

2020-07-28