Mutagenetix > Incidental Mutations

Incidental Mutation 'R8313:Vstm2a'

641515

Institutional Source

Beutler Lab

Gene Symbol

Vstm2a

Ensembl Gene

ENSMUSG00000048834

Gene Name

V-set and transmembrane domain containing 2A

Synonyms

9330184N17Rik, Vstm2

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8313 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

16257724-16427310 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 16281898 bp

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 231 (V231E)

Ref Sequence

ENSEMBL: ENSMUSP00000105272 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109645] [ENSMUST00000109647]

Predicted Effect

probably damaging
Transcript: ENSMUST00000109645
AA Change: V231E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000105272
Gene: ENSMUSG00000048834
AA Change: V231E

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
IG	33	149	1.32e-12	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000109647

SMART Domains

Protein: ENSMUSP00000105274
Gene: ENSMUSG00000048834

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
IG	33	149	1.32e-12	SMART
low complexity region	266	280	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000207256

Predicted Effect

probably benign
Transcript: ENSMUST00000208926

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atl2	C	T	17: 79,852,604	W518*	probably null	Het
Atp13a2	G	A	4: 141,002,735	V646I	probably benign	Het
Bcar1	A	T	8: 111,713,638	F575I	probably benign	Het
Bpifa6	T	A	2: 153,989,258	L248*	probably null	Het
Ccdc38	T	C	10: 93,563,249	L193P	probably damaging	Het
Ch25h	A	C	19: 34,474,738	I130S	probably benign	Het
Chaf1a	C	A	17: 56,044,109	Q30K	unknown	Het
Dab2ip	T	C	2: 35,727,428	L1106S	probably damaging	Het
Dnah3	A	G	7: 119,951,152	Y3315H	probably benign	Het
Dnah7b	G	A	1: 46,175,296	V1074I	possibly damaging	Het
Efemp1	A	G	11: 28,910,691	Q200R	probably benign	Het
Epx	C	T	11: 87,872,731	R221Q	possibly damaging	Het
Exosc7	T	C	9: 123,127,877	L109P	probably damaging	Het
Fam150b	G	T	12: 30,884,851	G23V	probably damaging	Het
Fbxo22	T	A	9: 55,221,060	F222I	probably damaging	Het
Fcgbp	A	G	7: 28,086,344	D402G	probably benign	Het
Foxr1	A	G	9: 44,436,054	V62A	probably damaging	Het
Gm2016	A	T	12: 87,876,994	D137V	unknown	Het
Gm8267	A	T	14: 44,724,058	H59Q	probably damaging	Het
Gnptab	T	A	10: 88,439,209	Y1090N	probably damaging	Het
Gpr20	A	G	15: 73,696,312	F76S	probably damaging	Het
Gpr33	A	G	12: 52,024,124	V44A	probably benign	Het
Grin3a	G	A	4: 49,665,599	T1012I	probably benign	Het
Itga1	T	A	13: 114,966,584	T1104S	probably benign	Het
Kidins220	T	A	12: 25,004,111	Y537N	probably damaging	Het
Lama1	A	G	17: 67,750,520	T530A		Het
Lysmd2	A	T	9: 75,625,758		probably benign	Het
Mdk	T	C	2: 91,930,833	K128E	unknown	Het
Mphosph8	AC	A	14: 56,678,605		probably null	Het
Muc16	A	C	9: 18,525,147	L7915W	possibly damaging	Het
Muc4	A	T	16: 32,753,423	T1100S	probably benign	Het
Mxra7	T	C	11: 116,804,550	Y176C	probably damaging	Het
Myh15	C	A	16: 49,120,018	T777N	probably damaging	Het
Myo18b	A	G	5: 112,875,179	S116P	unknown	Het
Noc3l	A	G	19: 38,795,810	L543P	probably damaging	Het
Olfr1355	C	T	10: 78,879,336	P55S	probably benign	Het
Olfr192	C	T	16: 59,098,641	G117D	unknown	Het
Olfr250	T	A	9: 38,368,050	V168E	probably damaging	Het
Pkm	G	T	9: 59,668,619	R106L	probably benign	Het
Prkab2	G	T	3: 97,663,595	V112F	probably benign	Het
Prkaca	A	T	8: 83,990,522	N172Y	probably damaging	Het
Prmt8	A	G	6: 127,689,850	V387A	probably benign	Het
Rad17	T	C	13: 100,624,566	T485A	probably benign	Het
Rita1	G	T	5: 120,609,651	T194K	possibly damaging	Het
Rogdi	C	A	16: 5,013,449		probably benign	Het
Senp5	T	C	16: 31,989,299	D379G	probably benign	Het
Slc4a4	A	G	5: 89,046,263	K201E	possibly damaging	Het
Slc9a4	C	T	1: 40,580,360		probably benign	Het
Tmem175	T	A	5: 108,643,209	S208R	probably benign	Het
Tmem237	A	T	1: 59,108,078	Y299N	probably damaging	Het
Tnrc6a	T	A	7: 123,170,713	N575K	possibly damaging	Het
Trak2	A	T	1: 58,921,147	C232*	probably null	Het
Ubr3	A	G	2: 69,945,134	H589R	probably damaging	Het
Vcp	T	C	4: 42,988,728	T249A	possibly damaging	Het
Vmn1r208	G	C	13: 22,772,777	I183M	probably benign	Het
Vmn1r231	C	T	17: 20,890,027	V209I	probably benign	Het
Vmn1r80	T	C	7: 12,193,067	F35L	probably benign	Het
Vmn2r58	A	T	7: 41,872,528	I48N	probably benign	Het
Zfp108	A	C	7: 24,260,662	Y226S	possibly damaging	Het
Zfp445	A	T	9: 122,853,630	N415K	possibly damaging	Het
Zfp938	T	G	10: 82,225,588	R399S	possibly damaging	Het
Zmym4	G	A	4: 126,910,969	H464Y	probably benign	Het

Other mutations in Vstm2a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01024:Vstm2a	APN	11	16281874	missense	possibly damaging	0.51
popiah	UTSW	11	16263041	missense	probably damaging	1.00
R0167:Vstm2a	UTSW	11	16258044	missense	probably damaging	0.99
R0314:Vstm2a	UTSW	11	16368388	splice site	probably benign
R0480:Vstm2a	UTSW	11	16263240	missense	probably damaging	1.00
R0533:Vstm2a	UTSW	11	16263041	missense	probably damaging	1.00
R0613:Vstm2a	UTSW	11	16263140	missense	probably damaging	1.00
R0788:Vstm2a	UTSW	11	16259968	missense	probably damaging	1.00
R1750:Vstm2a	UTSW	11	16263166	missense	possibly damaging	0.49
R1934:Vstm2a	UTSW	11	16409734	missense	unknown
R2066:Vstm2a	UTSW	11	16261483	missense	probably benign	0.09
R2101:Vstm2a	UTSW	11	16263191	missense	probably benign	0.19
R2251:Vstm2a	UTSW	11	16368273	missense	probably benign	0.00
R4084:Vstm2a	UTSW	11	16263098	missense	probably damaging	1.00
R4093:Vstm2a	UTSW	11	16259884	missense	probably damaging	0.98
R4745:Vstm2a	UTSW	11	16263061	missense	probably damaging	1.00
R4978:Vstm2a	UTSW	11	16261460	missense	possibly damaging	0.82
R5533:Vstm2a	UTSW	11	16263125	missense	possibly damaging	0.49
R5873:Vstm2a	UTSW	11	16258044	missense	probably damaging	0.99
R5894:Vstm2a	UTSW	11	16261483	missense	probably benign	0.09
R7094:Vstm2a	UTSW	11	16257990	unclassified	probably benign
R7753:Vstm2a	UTSW	11	16263040	missense	probably damaging	1.00
R8336:Vstm2a	UTSW	11	16257801	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- CATTCATGAGCACCAGAGCC -3'
(R):5'- CAATAAAGCGTGTGACAGTGTC -3'

Sequencing Primer
(F):5'- TGAGCACCAGAGCCAAGCTG -3'
(R):5'- AAAGCGTGTGACAGTGTCTTCAC -3'

Posted On

2020-07-28