Mutagenetix > Incidental Mutation

Incidental Mutation 'R8315:Cimip4'

641652

Institutional Source

Beutler Lab

Gene Symbol

Cimip4

Ensembl Gene

ENSMUSG00000062154

Gene Name

ciliary microtubule inner protein 4

Synonyms

1700061J05Rik, Tex33

MMRRC Submission

067720-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.049) question?

Stock #

R8315 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

78262600-78280112 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 78262686 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 262 (R262G)

Ref Sequence

ENSEMBL: ENSMUSP00000073984 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074380] [ENSMUST00000165170] [ENSMUST00000169575]

AlphaFold

Q9D9J2

Predicted Effect

probably benign
Transcript: ENSMUST00000074380
AA Change: R262G

PolyPhen 2 Score 0.115 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000073984
Gene: ENSMUSG00000062154
AA Change: R262G

Domain	Start	End	E-Value	Type
low complexity region	47	61	N/A	INTRINSIC
low complexity region	63	71	N/A	INTRINSIC
Pfam:TEX33	128	266	4.2e-73	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165170
AA Change: R262G

PolyPhen 2 Score 0.115 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000133264
Gene: ENSMUSG00000062154
AA Change: R262G

Domain	Start	End	E-Value	Type
low complexity region	47	61	N/A	INTRINSIC
low complexity region	63	71	N/A	INTRINSIC
Pfam:TEX33	128	265	1.7e-73	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000169575
AA Change: R237G

PolyPhen 2 Score 0.115 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000130849
Gene: ENSMUSG00000062154
AA Change: R237G

Domain	Start	End	E-Value	Type
low complexity region	22	36	N/A	INTRINSIC
low complexity region	38	46	N/A	INTRINSIC
Pfam:TEX33	103	241	9.6e-73	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	T	11: 9,328,460 (GRCm39)	E3511V	probably null	Het
Abca13	A	G	11: 9,535,502 (GRCm39)	T4709A	probably benign	Het
Aff1	G	T	5: 103,958,956 (GRCm39)	V342F	probably damaging	Het
Ahnak2	T	A	12: 112,745,756 (GRCm39)	Q1698L		Het
Ajap1	G	T	4: 153,516,813 (GRCm39)	T176K	probably damaging	Het
Alkal2	G	T	12: 30,934,850 (GRCm39)	G23V	probably damaging	Het
Cct3	A	G	3: 88,220,564 (GRCm39)	T259A	probably benign	Het
Cdk8	C	T	5: 146,205,061 (GRCm39)	L21F	probably damaging	Het
Csf2rb	G	A	15: 78,231,581 (GRCm39)	G494D	possibly damaging	Het
Cstf3	G	T	2: 104,420,926 (GRCm39)		probably benign	Het
Cyp4f39	A	G	17: 32,701,176 (GRCm39)	D222G	probably benign	Het
Dcp2	T	C	18: 44,529,071 (GRCm39)	I62T	probably benign	Het
Dnaaf9	ATCCTCCTCCTCCTCCTCC	ATCCTCCTCCTCCTCC	2: 130,612,655 (GRCm39)		probably benign	Het
Dpp8	T	C	9: 64,988,133 (GRCm39)	*893Q	probably null	Het
Dpyd	A	T	3: 119,108,534 (GRCm39)	H859L	probably benign	Het
Dst	T	C	1: 34,323,501 (GRCm39)		probably null	Het
Dynlt2a2	A	G	17: 15,190,717 (GRCm39)	Y81H	probably damaging	Het
Egfr	A	G	11: 16,825,027 (GRCm39)	I456V	probably benign	Het
Elf3	A	G	1: 135,184,314 (GRCm39)	F185L	probably benign	Het
Emx1	A	G	6: 85,171,088 (GRCm39)	T164A	possibly damaging	Het
Fras1	G	A	5: 96,891,041 (GRCm39)	V2857M	probably damaging	Het
Gba2	AAAGAACCGTGTATACCGCCTGGGATGGAAAGAA	AAA	4: 43,569,937 (GRCm39)		probably null	Het
Gda	T	A	19: 21,394,435 (GRCm39)	T215S	probably benign	Het
Gm14443	C	T	2: 175,013,640 (GRCm39)		probably null	Het
Gpr152	C	T	19: 4,193,469 (GRCm39)	P337S	probably damaging	Het
H2-T10	A	G	17: 36,429,905 (GRCm39)	I296T	probably benign	Het
Hoxd11	G	A	2: 74,513,466 (GRCm39)	E244K	probably benign	Het
Inka1	C	A	9: 107,861,506 (GRCm39)	S270I	probably damaging	Het
Kazn	C	T	4: 141,869,002 (GRCm39)	D325N		Het
Lama2	T	C	10: 27,298,655 (GRCm39)	N147S	probably damaging	Het
Lamc1	A	T	1: 153,119,167 (GRCm39)	N817K	probably benign	Het
Met	T	C	6: 17,533,956 (GRCm39)	S636P	probably damaging	Het
Mrgpra3	A	T	7: 47,251,051 (GRCm39)	M1K	probably null	Het
Myh15	C	A	16: 48,940,381 (GRCm39)	T777N	probably damaging	Het
Or10ag2	C	A	2: 87,248,995 (GRCm39)	A201D	probably damaging	Het
Or6c209	G	A	10: 129,483,522 (GRCm39)	C175Y	probably benign	Het
Or8c13	T	C	9: 38,091,505 (GRCm39)	T205A	probably benign	Het
Pbx2	A	G	17: 34,811,707 (GRCm39)	I60M	probably damaging	Het
Phf8-ps	C	A	17: 33,286,038 (GRCm39)	A255S	probably benign	Het
Pla2g4a	T	C	1: 149,761,965 (GRCm39)	N164S	probably benign	Het
Poln	A	G	5: 34,266,717 (GRCm39)	M480T	probably benign	Het
Ppp2r2a	T	C	14: 67,261,177 (GRCm39)	N181S	probably damaging	Het
Ppp3r2	A	C	4: 49,681,705 (GRCm39)	F82V	probably damaging	Het
Prox2	A	G	12: 85,142,182 (GRCm39)	V7A	probably benign	Het
Ptpn3	A	T	4: 57,270,063 (GRCm39)	I33K	possibly damaging	Het
Rad21l	A	T	2: 151,497,160 (GRCm39)	M318K	probably benign	Het
Rftn1	A	G	17: 50,309,665 (GRCm39)	S445P	possibly damaging	Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGGCGGCGG	7: 97,229,130 (GRCm39)		probably benign	Het
Rtp4	C	T	16: 23,431,998 (GRCm39)	P177S	possibly damaging	Het
Saa4	T	A	7: 46,379,052 (GRCm39)	N96I	possibly damaging	Het
Shb	A	G	4: 45,489,079 (GRCm39)	Y266H	probably damaging	Het
Slc45a4	T	G	15: 73,461,405 (GRCm39)	Y88S	probably damaging	Het
Tbccd1	A	G	16: 22,641,564 (GRCm39)	M312T	probably damaging	Het
Tecta	C	T	9: 42,299,121 (GRCm39)		probably null	Het
Tle1	A	T	4: 72,044,428 (GRCm39)	C526*	probably null	Het
Tmem87a	C	T	2: 120,234,441 (GRCm39)	G34D	probably damaging	Het
Trav13d-1	C	A	14: 53,089,059 (GRCm39)	Q23K	probably benign	Het
Txndc11	G	T	16: 10,893,465 (GRCm39)	T755N	possibly damaging	Het
Vmn1r223	A	G	13: 23,434,339 (GRCm39)	D311G	probably damaging	Het
Vmn2r66	T	A	7: 84,643,932 (GRCm39)	Y826F	possibly damaging	Het
Wdr90	A	T	17: 26,064,399 (GRCm39)	M1824K	probably benign	Het
Zfp523	G	A	17: 28,421,562 (GRCm39)	G440D	possibly damaging	Het

Other mutations in Cimip4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00598:Cimip4	APN	15	78,270,438 (GRCm39)	missense	probably damaging	1.00
IGL02554:Cimip4	APN	15	78,262,736 (GRCm39)	missense	possibly damaging	0.92
IGL03153:Cimip4	APN	15	78,269,516 (GRCm39)	missense	probably damaging	0.98
R0201:Cimip4	UTSW	15	78,263,028 (GRCm39)	missense	probably damaging	0.96
R1557:Cimip4	UTSW	15	78,270,474 (GRCm39)	missense	probably damaging	0.99
R1828:Cimip4	UTSW	15	78,270,588 (GRCm39)	missense	possibly damaging	0.62
R1891:Cimip4	UTSW	15	78,262,952 (GRCm39)	missense	probably damaging	1.00
R5121:Cimip4	UTSW	15	78,270,373 (GRCm39)	missense	probably benign	0.40
R5438:Cimip4	UTSW	15	78,263,040 (GRCm39)	missense	possibly damaging	0.71
R6076:Cimip4	UTSW	15	78,270,427 (GRCm39)	missense	possibly damaging	0.66
R6156:Cimip4	UTSW	15	78,263,013 (GRCm39)	missense	probably damaging	1.00
R7105:Cimip4	UTSW	15	78,270,318 (GRCm39)	missense	possibly damaging	0.81
R7530:Cimip4	UTSW	15	78,270,516 (GRCm39)	missense	probably benign	0.02
R8247:Cimip4	UTSW	15	78,262,992 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TAGAGGACCTGTCACCAGAG -3'
(R):5'- CCTTGAGGTGGATCTGAAGAG -3'

Sequencing Primer
(F):5'- CATGAAGAAGCTGTCTGGTGC -3'
(R):5'- TTGAGGTGGATCTGAAGAGGCATG -3'

Posted On

2020-07-28