Incidental Mutation 'BB002:Chst11'
ID 642174
Institutional Source Beutler Lab
Gene Symbol Chst11
Ensembl Gene ENSMUSG00000034612
Gene Name carbohydrate sulfotransferase 11
Synonyms C4ST1, 1110020P09Rik, chondroitin 4, C4ST-1, C4ST
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # BB002
Quality Score 225.009
Status Not validated
Chromosome 10
Chromosomal Location 82821332-83031734 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 83026788 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Threonine at position 72 (S72T)
Ref Sequence ENSEMBL: ENSMUSP00000045349 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040110]
AlphaFold Q9JME2
Predicted Effect probably damaging
Transcript: ENSMUST00000040110
AA Change: S72T

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000045349
Gene: ENSMUSG00000034612
AA Change: S72T

transmembrane domain 13 35 N/A INTRINSIC
Pfam:Sulfotransfer_2 108 344 5.6e-71 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the sulfotransferase 2 family. It is localized to the golgi membrane, and catalyzes the transfer of sulfate to position 4 of the N-acetylgalactosamine (GalNAc) residue of chondroitin. Chondroitin sulfate constitutes the predominant proteoglycan present in cartilage, and is distributed on the surfaces of many cells and extracellular matrices. A chromosomal translocation involving this gene and IgH, t(12;14)(q23;q32), has been reported in a patient with B-cell chronic lymphocytic leukemia. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a null allele exhibit neonatal lethality associated with respiratory distress, dwarfism, and abnormal skeletal structures. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930433I11Rik C T 7: 40,643,506 (GRCm39) Q392* probably null Het
4933427D14Rik A C 11: 72,071,327 (GRCm39) L473V probably benign Het
A930002H24Rik A T 17: 64,170,392 (GRCm39) V132E unknown Het
Abcc2 A G 19: 43,795,551 (GRCm39) I436V probably benign Het
Ahr G A 12: 35,565,067 (GRCm39) Q103* probably null Het
Asb15 T A 6: 24,562,723 (GRCm39) H228Q probably benign Het
Asphd1 T A 7: 126,547,628 (GRCm39) Y225F probably damaging Het
Atp2c1 A G 9: 105,319,969 (GRCm39) M468T possibly damaging Het
Brca1 A G 11: 101,398,972 (GRCm39) I1540T probably benign Het
Ccn5 G C 2: 163,670,961 (GRCm39) R156T possibly damaging Het
Cdh20 A T 1: 104,912,473 (GRCm39) I576F probably damaging Het
Cldn17 T G 16: 88,303,533 (GRCm39) K65N probably damaging Het
Cldn22 T C 8: 48,278,222 (GRCm39) I220T probably benign Het
Coasy T G 11: 100,974,522 (GRCm39) D229E probably benign Het
Colec10 T C 15: 54,325,767 (GRCm39) V199A probably damaging Het
Cpn2 G T 16: 30,079,619 (GRCm39) D27E probably damaging Het
F5 T A 1: 164,003,935 (GRCm39) probably null Het
Fat3 C T 9: 15,942,656 (GRCm39) V1239I possibly damaging Het
Fbxl16 A G 17: 26,035,880 (GRCm39) N159S probably benign Het
Fhad1 A G 4: 141,681,498 (GRCm39) I514T probably damaging Het
Fras1 A G 5: 96,929,443 (GRCm39) K3949R probably damaging Het
Gm8126 A G 14: 43,119,023 (GRCm39) N164S probably damaging Het
Grm3 T A 5: 9,639,880 (GRCm39) E55V probably benign Het
Itgbl1 G A 14: 124,210,735 (GRCm39) D478N possibly damaging Het
Kcnt2 T A 1: 140,282,247 (GRCm39) Y77* probably null Het
Kdm4c T C 4: 74,323,058 (GRCm39) S997P probably damaging Het
Kti12 A C 4: 108,705,443 (GRCm39) E119A probably benign Het
Kti12 G T 4: 108,705,444 (GRCm39) E119D probably benign Het
Lrrc28 T C 7: 67,268,857 (GRCm39) Y71C probably damaging Het
Lrrc45 T A 11: 120,606,706 (GRCm39) W203R probably benign Het
Lrrc66 A T 5: 73,765,835 (GRCm39) C403S possibly damaging Het
Ly6g6e A T 17: 35,296,894 (GRCm39) E45V probably damaging Het
Mgam C T 6: 40,735,985 (GRCm39) T1574I probably damaging Het
Msrb2 A T 2: 19,388,091 (GRCm39) M80L probably benign Het
Musk T A 4: 58,367,513 (GRCm39) L592Q probably damaging Het
Nlrp4a C A 7: 26,150,011 (GRCm39) N539K probably benign Het
Obscn C G 11: 59,003,381 (GRCm39) E1306Q probably benign Het
Opalin T A 19: 41,052,242 (GRCm39) *144C probably null Het
Or1e28-ps1 A G 11: 73,615,362 (GRCm39) S163P unknown Het
Or1l8 A G 2: 36,817,371 (GRCm39) F252L possibly damaging Het
Or4f4-ps1 A G 2: 111,330,166 (GRCm39) S190G probably damaging Het
Or9g4 T C 2: 85,504,907 (GRCm39) E196G Het
Pgam2 T A 11: 5,753,007 (GRCm39) H196L possibly damaging Het
Prrc2b A G 2: 32,094,127 (GRCm39) E503G probably damaging Het
Prss45 T C 9: 110,670,103 (GRCm39) L304P unknown Het
Rbm20 T A 19: 53,801,753 (GRCm39) V87D probably damaging Het
Rskr T C 11: 78,182,449 (GRCm39) L86P probably damaging Het
Serpinb8 T C 1: 107,526,715 (GRCm39) L85S probably benign Het
Sh2b2 A T 5: 136,253,115 (GRCm39) H352Q probably benign Het
Slc6a17 T C 3: 107,403,056 (GRCm39) I124V probably damaging Het
Smim10l1 G A 6: 133,082,545 (GRCm39) V31M probably damaging Het
Snx10 T C 6: 51,557,301 (GRCm39) S78P probably benign Het
Stard10 T C 7: 100,991,838 (GRCm39) V187A probably damaging Het
Svil C A 18: 5,118,357 (GRCm39) D2146E probably benign Het
Tsc22d4 A G 5: 137,749,627 (GRCm39) D301G probably null Het
Ube3c T A 5: 29,851,429 (GRCm39) I752N probably damaging Het
Wwc1 T C 11: 35,734,990 (GRCm39) M962V probably benign Het
Other mutations in Chst11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00339:Chst11 APN 10 83,027,467 (GRCm39) missense possibly damaging 0.94
IGL00659:Chst11 APN 10 83,027,639 (GRCm39) utr 3 prime probably benign
IGL02676:Chst11 APN 10 83,027,563 (GRCm39) missense probably damaging 1.00
IGL02999:Chst11 APN 10 83,027,538 (GRCm39) missense possibly damaging 0.77
IGL03368:Chst11 APN 10 82,927,980 (GRCm39) missense probably benign 0.39
lavoisier UTSW 10 83,027,020 (GRCm39) missense possibly damaging 0.81
Mendeleev UTSW 10 83,027,302 (GRCm39) missense probably damaging 1.00
BB012:Chst11 UTSW 10 83,026,788 (GRCm39) missense probably damaging 0.98
R1929:Chst11 UTSW 10 83,027,004 (GRCm39) missense probably damaging 0.99
R2271:Chst11 UTSW 10 83,027,004 (GRCm39) missense probably damaging 0.99
R4844:Chst11 UTSW 10 83,026,923 (GRCm39) nonsense probably null
R5040:Chst11 UTSW 10 83,026,780 (GRCm39) missense probably benign 0.02
R5396:Chst11 UTSW 10 83,027,083 (GRCm39) missense probably damaging 0.98
R6512:Chst11 UTSW 10 83,027,302 (GRCm39) missense probably damaging 1.00
R6964:Chst11 UTSW 10 83,027,215 (GRCm39) missense probably damaging 1.00
R7803:Chst11 UTSW 10 83,027,020 (GRCm39) missense possibly damaging 0.81
R7925:Chst11 UTSW 10 83,026,788 (GRCm39) missense probably damaging 0.98
R9194:Chst11 UTSW 10 83,027,319 (GRCm39) missense probably damaging 1.00
R9406:Chst11 UTSW 10 83,026,881 (GRCm39) missense possibly damaging 0.70
X0033:Chst11 UTSW 10 83,026,984 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer

Sequencing Primer
Posted On 2020-08-01