Incidental Mutation 'BB011:Cars1'
ID 642638
Institutional Source Beutler Lab
Gene Symbol Cars1
Ensembl Gene ENSMUSG00000010755
Gene Name cysteinyl-tRNA synthetase 1
Synonyms Cars, CA3
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # BB011
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 143110967-143153827 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 143123608 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 531 (T531A)
Ref Sequence ENSEMBL: ENSMUSP00000010899 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000010899] [ENSMUST00000105909]
AlphaFold Q9ER72
Predicted Effect possibly damaging
Transcript: ENSMUST00000010899
AA Change: T531A

PolyPhen 2 Score 0.885 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000010899
Gene: ENSMUSG00000010755
AA Change: T531A

DomainStartEndE-ValueType
Pfam:tRNA-synt_1e 124 537 2.7e-128 PFAM
Blast:DALR_2 584 644 2e-13 BLAST
coiled coil region 728 768 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000105909
AA Change: T448A

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000101529
Gene: ENSMUSG00000010755
AA Change: T448A

DomainStartEndE-ValueType
Pfam:tRNA-synt_1e 41 454 2e-129 PFAM
Pfam:tRNA-synt_1g 387 465 1.2e-6 PFAM
Blast:DALR_2 501 561 1e-13 BLAST
coiled coil region 645 685 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000208575
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a class 1 aminoacyl-tRNA synthetase, cysteinyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. This gene is one of several located near the imprinted gene domain on chromosome 11p15.5, an important tumor-suppressor gene region. Alterations in this region have been associated with Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma, and lung, ovarian and breast cancers. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2010]
Allele List at MGI

All alleles(37) : Targeted, other(2) Gene trapped(35)

Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acacb A G 5: 114,383,281 (GRCm39) K2155E possibly damaging Het
Adgre5 G A 8: 84,456,029 (GRCm39) P256S possibly damaging Het
Adipor1 T A 1: 134,353,731 (GRCm39) V172D probably damaging Het
Ahsa1 T C 12: 87,317,230 (GRCm39) probably null Het
Ankrd11 T C 8: 123,622,641 (GRCm39) I404V possibly damaging Het
Asxl3 G A 18: 22,658,602 (GRCm39) R2204Q probably damaging Het
Barhl2 A G 5: 106,605,515 (GRCm39) S65P unknown Het
Bbx A T 16: 50,044,671 (GRCm39) L630H probably damaging Het
Catsperb T A 12: 101,486,824 (GRCm39) H450Q probably benign Het
Cdt1 T C 8: 123,296,091 (GRCm39) L135P probably damaging Het
Cfap206 T A 4: 34,728,833 (GRCm39) H24L probably benign Het
Cilk1 T C 9: 78,062,746 (GRCm39) L260P probably damaging Het
Cnga4 T A 7: 105,057,028 (GRCm39) V480E probably benign Het
Cnot1 ACG A 8: 96,472,275 (GRCm39) probably null Het
Ctcfl G A 2: 172,955,449 (GRCm39) T271I possibly damaging Het
Dlc1 T C 8: 37,038,570 (GRCm39) R1003G probably benign Het
Dnah7b A G 1: 46,258,590 (GRCm39) D1927G probably benign Het
Dscc1 A T 15: 54,945,572 (GRCm39) D374E probably benign Het
Eci2 G A 13: 35,177,053 (GRCm39) Q69* probably null Het
Ep300 C A 15: 81,533,703 (GRCm39) P1920Q unknown Het
Epha5 A G 5: 84,232,705 (GRCm39) Y629H possibly damaging Het
Fat2 G A 11: 55,153,613 (GRCm39) T3533I probably benign Het
Fat3 T C 9: 15,910,593 (GRCm39) N1803S probably damaging Het
Fcrl2 T C 3: 87,166,840 (GRCm39) Y51C probably damaging Het
G530012D18Rik C G 1: 85,504,935 (GRCm39) D113E unknown Het
Gcnt2 A T 13: 41,072,040 (GRCm39) K228* probably null Het
Gucy2c A T 6: 136,740,053 (GRCm39) V258E probably benign Het
Hecw1 C A 13: 14,497,113 (GRCm39) L298F probably damaging Het
Hydin T G 8: 111,145,103 (GRCm39) V818G possibly damaging Het
Hykk A G 9: 54,829,524 (GRCm39) Y131C probably damaging Het
Mpo A G 11: 87,685,666 (GRCm39) D48G probably damaging Het
Mrps10 T C 17: 47,689,208 (GRCm39) *202Q probably null Het
Mrps14 T C 1: 160,024,559 (GRCm39) V30A probably benign Het
Mtmr7 G A 8: 41,059,927 (GRCm39) A62V possibly damaging Het
Muc2 G T 7: 141,281,631 (GRCm39) G497W probably damaging Het
Nnt A T 13: 119,523,181 (GRCm39) V237D probably damaging Het
Nox4 G T 7: 87,023,589 (GRCm39) V492L probably benign Het
Obscn C G 11: 59,003,381 (GRCm39) E1306Q probably benign Het
Or5ak23 T C 2: 85,244,563 (GRCm39) Y220C probably benign Het
Or6aa1 A G 7: 86,043,938 (GRCm39) I256T probably damaging Het
Pard3 A G 8: 128,137,231 (GRCm39) N861S probably benign Het
Pdlim4 G A 11: 53,946,048 (GRCm39) R230* probably null Het
Pinlyp C T 7: 24,241,550 (GRCm39) V159M possibly damaging Het
Plcb1 A T 2: 135,201,613 (GRCm39) T855S probably benign Het
Pot1a T A 6: 25,753,309 (GRCm39) D409V possibly damaging Het
Prom1 T C 5: 44,187,111 (GRCm39) D382G probably benign Het
Prss16 A T 13: 22,192,834 (GRCm39) N83K probably damaging Het
Ptprn2 A G 12: 116,804,884 (GRCm39) D133G probably benign Het
Rasef C T 4: 73,659,166 (GRCm39) probably null Het
Rbak A G 5: 143,160,241 (GRCm39) S271P probably damaging Het
Rbm20 A T 19: 53,666,016 (GRCm39) I60F possibly damaging Het
Rftn1 G T 17: 50,354,408 (GRCm39) A318D probably damaging Het
Rsf1 G GACGGCCGCC 7: 97,229,116 (GRCm39) probably benign Het
Serpinb3c A G 1: 107,200,904 (GRCm39) L171P probably damaging Het
Slc25a19 T C 11: 115,506,376 (GRCm39) Y211C unknown Het
Sorbs2 C T 8: 46,248,507 (GRCm39) S586L probably damaging Het
Spesp1 A T 9: 62,180,733 (GRCm39) S58R probably benign Het
Spryd3 A G 15: 102,026,762 (GRCm39) I329T probably benign Het
St8sia2 G A 7: 73,616,700 (GRCm39) L113F probably damaging Het
Star T C 8: 26,299,883 (GRCm39) I75T possibly damaging Het
Tasor2 A T 13: 3,644,331 (GRCm39) F129Y possibly damaging Het
Tdrd6 T A 17: 43,938,697 (GRCm39) I784F possibly damaging Het
Tex55 G A 16: 38,632,826 (GRCm39) Q369* probably null Het
Tsc22d4 A G 5: 137,766,273 (GRCm39) I144V unknown Het
Tspan8 T C 10: 115,669,229 (GRCm39) probably null Het
Ttll9 C T 2: 152,804,407 (GRCm39) probably benign Het
Ubr4 T G 4: 139,194,587 (GRCm39) L1160R unknown Het
Ufd1 A G 16: 18,642,035 (GRCm39) Y162C possibly damaging Het
Unc13c A T 9: 73,641,690 (GRCm39) F1268I probably benign Het
Uvssa T C 5: 33,568,295 (GRCm39) I561T probably damaging Het
Vmn2r15 A T 5: 109,434,254 (GRCm39) S817T probably damaging Het
Ybx1 T C 4: 119,139,476 (GRCm39) E173G probably damaging Het
Zc3h6 T C 2: 128,857,400 (GRCm39) S640P possibly damaging Het
Other mutations in Cars1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01155:Cars1 APN 7 143,123,586 (GRCm39) missense probably benign 0.03
IGL02192:Cars1 APN 7 143,125,325 (GRCm39) missense probably damaging 1.00
IGL02645:Cars1 APN 7 143,111,646 (GRCm39) missense probably damaging 0.97
IGL02807:Cars1 APN 7 143,123,209 (GRCm39) missense possibly damaging 0.87
IGL02860:Cars1 APN 7 143,140,158 (GRCm39) missense probably damaging 1.00
IGL03005:Cars1 APN 7 143,112,906 (GRCm39) missense probably damaging 1.00
Vroom UTSW 7 143,124,385 (GRCm39) missense probably damaging 1.00
Zoom UTSW 7 143,146,362 (GRCm39) nonsense probably null
BB001:Cars1 UTSW 7 143,123,608 (GRCm39) missense possibly damaging 0.88
F5493:Cars1 UTSW 7 143,123,608 (GRCm39) missense probably damaging 1.00
R0358:Cars1 UTSW 7 143,142,219 (GRCm39) splice site probably benign
R0452:Cars1 UTSW 7 143,146,362 (GRCm39) nonsense probably null
R0717:Cars1 UTSW 7 143,138,492 (GRCm39) missense probably damaging 0.98
R0930:Cars1 UTSW 7 143,124,307 (GRCm39) missense probably damaging 1.00
R1069:Cars1 UTSW 7 143,123,844 (GRCm39) missense probably benign 0.40
R1184:Cars1 UTSW 7 143,140,876 (GRCm39) missense probably damaging 1.00
R1503:Cars1 UTSW 7 143,122,726 (GRCm39) missense probably benign 0.04
R1755:Cars1 UTSW 7 143,123,194 (GRCm39) missense probably damaging 1.00
R1762:Cars1 UTSW 7 143,146,211 (GRCm39) missense probably damaging 1.00
R1783:Cars1 UTSW 7 143,146,211 (GRCm39) missense probably damaging 1.00
R1786:Cars1 UTSW 7 143,146,211 (GRCm39) missense probably damaging 1.00
R1828:Cars1 UTSW 7 143,130,385 (GRCm39) missense probably damaging 0.97
R2084:Cars1 UTSW 7 143,140,919 (GRCm39) missense probably benign 0.03
R2132:Cars1 UTSW 7 143,146,211 (GRCm39) missense probably damaging 1.00
R2133:Cars1 UTSW 7 143,146,211 (GRCm39) missense probably damaging 1.00
R2397:Cars1 UTSW 7 143,146,244 (GRCm39) missense possibly damaging 0.61
R4012:Cars1 UTSW 7 143,113,411 (GRCm39) missense possibly damaging 0.65
R4057:Cars1 UTSW 7 143,124,385 (GRCm39) missense probably damaging 1.00
R4082:Cars1 UTSW 7 143,123,234 (GRCm39) missense probably damaging 1.00
R4118:Cars1 UTSW 7 143,113,384 (GRCm39) critical splice donor site probably null
R4527:Cars1 UTSW 7 143,118,786 (GRCm39) missense probably benign 0.22
R4663:Cars1 UTSW 7 143,129,697 (GRCm39) missense probably damaging 1.00
R4758:Cars1 UTSW 7 143,125,304 (GRCm39) missense probably benign 0.01
R4820:Cars1 UTSW 7 143,124,301 (GRCm39) missense probably damaging 1.00
R4921:Cars1 UTSW 7 143,123,212 (GRCm39) missense probably damaging 1.00
R4923:Cars1 UTSW 7 143,123,587 (GRCm39) missense probably damaging 0.97
R5512:Cars1 UTSW 7 143,123,870 (GRCm39) missense possibly damaging 0.91
R6505:Cars1 UTSW 7 143,118,744 (GRCm39) missense probably damaging 1.00
R7125:Cars1 UTSW 7 143,138,510 (GRCm39) missense probably benign 0.01
R7641:Cars1 UTSW 7 143,140,840 (GRCm39) critical splice donor site probably null
R7674:Cars1 UTSW 7 143,140,840 (GRCm39) critical splice donor site probably null
R7812:Cars1 UTSW 7 143,123,784 (GRCm39) missense probably damaging 1.00
R7924:Cars1 UTSW 7 143,123,608 (GRCm39) missense possibly damaging 0.88
R8260:Cars1 UTSW 7 143,139,446 (GRCm39) missense probably benign
R8447:Cars1 UTSW 7 143,123,766 (GRCm39) missense possibly damaging 0.67
R8905:Cars1 UTSW 7 143,140,196 (GRCm39) missense probably damaging 1.00
R9200:Cars1 UTSW 7 143,129,654 (GRCm39) critical splice donor site probably null
R9240:Cars1 UTSW 7 143,138,533 (GRCm39) missense probably benign 0.01
R9441:Cars1 UTSW 7 143,123,185 (GRCm39) missense probably benign 0.00
R9566:Cars1 UTSW 7 143,113,384 (GRCm39) critical splice donor site probably null
R9603:Cars1 UTSW 7 143,112,929 (GRCm39) missense possibly damaging 0.83
X0021:Cars1 UTSW 7 143,130,321 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- AGAAACGTGACATAGTCCCTGGG -3'
(R):5'- GCCTTGAAGAAGCACTCAGG -3'

Sequencing Primer
(F):5'- CCTGAGTCAGAATGAAATGGTCTGC -3'
(R):5'- AGCACTCAGGTGAGCACAGC -3'
Posted On 2020-08-01