Mutagenetix > Incidental Mutation

Incidental Mutation 'BB016:Samd3'

642904

Institutional Source

Beutler Lab

Gene Symbol

Samd3

Ensembl Gene

ENSMUSG00000051354

Gene Name

sterile alpha motif domain containing 3

Synonyms

LOC268288

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.194) question?

Stock #

BB016

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

26105605-26148070 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 26127813 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 270 (K270R)

Ref Sequence

ENSEMBL: ENSMUSP00000129054 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060716] [ENSMUST00000164660] [ENSMUST00000218301] [ENSMUST00000220219]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000060716
AA Change: K270R

PolyPhen 2 Score 0.943 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000057805
Gene: ENSMUSG00000051354
AA Change: K270R

Domain	Start	End	E-Value	Type
SAM	1	66	3e-7	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000164660
AA Change: K270R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000129054
Gene: ENSMUSG00000051354
AA Change: K270R

Domain	Start	End	E-Value	Type
SAM	1	66	3e-7	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000218301
AA Change: K297R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000220219
AA Change: K270R

PolyPhen 2 Score 0.943 (Sensitivity: 0.80; Specificity: 0.95)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410137M14Rik	T	A	17: 37,289,412 (GRCm39)	I105F	possibly damaging	Het
Adprhl1	C	T	8: 13,298,682 (GRCm39)	V83I	probably damaging	Het
Adra1d	G	T	2: 131,403,600 (GRCm39)	C163*	probably null	Het
Ak9	A	G	10: 41,259,944 (GRCm39)	D874G		Het
Akap8	A	T	17: 32,528,419 (GRCm39)	S498T	probably damaging	Het
Alyref2	C	G	1: 171,331,407 (GRCm39)	F61L	probably benign	Het
Ank1	A	T	8: 23,606,123 (GRCm39)	I1172F	probably damaging	Het
Ankrd50	A	T	3: 38,511,258 (GRCm39)	F370I	probably damaging	Het
Apip	A	C	2: 102,913,366 (GRCm39)	T41P	probably benign	Het
Atg4d	G	A	9: 21,178,260 (GRCm39)	R126Q	probably null	Het
Ccdc86	A	G	19: 10,926,183 (GRCm39)	S139P	unknown	Het
Ceacam16	A	G	7: 19,587,556 (GRCm39)	L404P	probably damaging	Het
Dennd3	G	T	15: 73,436,423 (GRCm39)	V1010L	probably damaging	Het
Disp1	A	G	1: 182,917,103 (GRCm39)	S108P	probably benign	Het
Ecpas	A	G	4: 58,869,554 (GRCm39)	C238R	probably damaging	Het
Ephb2	A	G	4: 136,388,195 (GRCm39)	V635A	probably damaging	Het
G530012D18Rik	C	G	1: 85,504,935 (GRCm39)	D113E	unknown	Het
Gars1	A	G	6: 55,040,102 (GRCm39)	H343R	probably damaging	Het
Gli2	A	T	1: 118,769,772 (GRCm39)	N593K	possibly damaging	Het
Il18rap	T	A	1: 40,570,740 (GRCm39)	N227K	probably damaging	Het
Il4ra	T	C	7: 125,174,348 (GRCm39)	S297P	probably benign	Het
Itprid1	G	A	6: 55,874,946 (GRCm39)	V299M	probably damaging	Het
Jak1	A	T	4: 101,011,842 (GRCm39)	F1087I	probably damaging	Het
Klf16	A	G	10: 80,412,698 (GRCm39)	S113P	probably benign	Het
Klhl30	A	T	1: 91,283,238 (GRCm39)	E280V	possibly damaging	Het
Kti12	G	T	4: 108,705,444 (GRCm39)	E119D	probably benign	Het
Kti12	A	C	4: 108,705,443 (GRCm39)	E119A	probably benign	Het
Lama4	A	G	10: 38,954,843 (GRCm39)	H1132R	probably damaging	Het
Lmtk3	A	G	7: 45,444,572 (GRCm39)	D1085G	unknown	Het
Lrrc9	C	A	12: 72,533,071 (GRCm39)	T980K	possibly damaging	Het
Nceh1	A	G	3: 27,333,396 (GRCm39)	D164G	probably benign	Het
Nlrp2	A	G	7: 5,330,498 (GRCm39)	S633P	probably damaging	Het
Nxn	A	G	11: 76,164,863 (GRCm39)	V216A	possibly damaging	Het
Odf4	A	T	11: 68,813,759 (GRCm39)	V143D	possibly damaging	Het
Or4d6	G	A	19: 12,086,118 (GRCm39)	T38I	unknown	Het
Pex12	A	G	11: 83,188,809 (GRCm39)	I62T	probably damaging	Het
Plekhg1	G	A	10: 3,869,170 (GRCm39)	D237N	probably damaging	Het
Rxrb	T	A	17: 34,255,645 (GRCm39)	D377E	probably benign	Het
Ryr2	T	A	13: 11,609,680 (GRCm39)	D4382V	probably damaging	Het
Ryr2	T	A	13: 11,705,181 (GRCm39)	K2862*	probably null	Het
Ryr3	A	G	2: 112,664,533 (GRCm39)	L1606P	probably benign	Het
Slc2a5	C	A	4: 150,223,942 (GRCm39)	F211L	probably benign	Het
Spata31	T	A	13: 65,069,532 (GRCm39)	V560D	probably benign	Het
Tbk1	A	G	10: 121,393,138 (GRCm39)	C471R	probably benign	Het
Tbx20	A	T	9: 24,637,059 (GRCm39)	S343T	possibly damaging	Het
Tesk2	A	G	4: 116,659,452 (GRCm39)	E304G	probably benign	Het
Tle1	A	G	4: 72,118,239 (GRCm39)	F2L	possibly damaging	Het
Tle4	G	T	19: 14,495,244 (GRCm39)	P162T	probably benign	Het
Ttn	G	A	2: 76,673,816 (GRCm39)	P11172S	unknown	Het
Tulp1	T	C	17: 28,572,746 (GRCm39)	N470S	possibly damaging	Het
Unc13b	A	G	4: 43,174,399 (GRCm39)	I1742M	unknown	Het
Vmn2r107	T	G	17: 20,565,706 (GRCm39)	I7S	probably null	Het
Vmn2r91	T	G	17: 18,327,906 (GRCm39)	I500R	probably damaging	Het
Xpnpep3	A	G	15: 81,311,626 (GRCm39)	I111V	probably damaging	Het
Zp3r	T	A	1: 130,519,217 (GRCm39)	E308V	probably benign	Het

Other mutations in Samd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00532:Samd3	APN	10	26,127,744 (GRCm39)	missense	probably damaging	1.00
IGL00754:Samd3	APN	10	26,120,425 (GRCm39)	missense	probably benign	0.19
IGL01672:Samd3	APN	10	26,146,067 (GRCm39)	missense	possibly damaging	0.94
IGL02211:Samd3	APN	10	26,109,455 (GRCm39)	missense	probably damaging	1.00
IGL02397:Samd3	APN	10	26,109,474 (GRCm39)	missense	possibly damaging	0.85
IGL02755:Samd3	APN	10	26,120,475 (GRCm39)	missense	probably damaging	1.00
IGL02885:Samd3	APN	10	26,147,762 (GRCm39)	missense	probably benign	0.43
IGL03115:Samd3	APN	10	26,147,606 (GRCm39)	missense	probably damaging	1.00
IGL03157:Samd3	APN	10	26,139,740 (GRCm39)	missense	probably benign	0.05
IGL03172:Samd3	APN	10	26,106,064 (GRCm39)	missense	probably damaging	1.00
BB006:Samd3	UTSW	10	26,127,813 (GRCm39)	missense	probably damaging	1.00
R0034:Samd3	UTSW	10	26,147,398 (GRCm39)	splice site	probably benign
R0081:Samd3	UTSW	10	26,147,399 (GRCm39)	splice site	probably benign
R0197:Samd3	UTSW	10	26,147,752 (GRCm39)	missense	possibly damaging	0.77
R0566:Samd3	UTSW	10	26,120,396 (GRCm39)	missense	possibly damaging	0.83
R0632:Samd3	UTSW	10	26,120,393 (GRCm39)	missense	possibly damaging	0.86
R0782:Samd3	UTSW	10	26,146,138 (GRCm39)	missense	probably damaging	0.97
R0834:Samd3	UTSW	10	26,147,725 (GRCm39)	missense	probably benign	0.01
R1106:Samd3	UTSW	10	26,147,689 (GRCm39)	missense	possibly damaging	0.57
R1844:Samd3	UTSW	10	26,127,672 (GRCm39)	missense	probably damaging	1.00
R1907:Samd3	UTSW	10	26,147,754 (GRCm39)	nonsense	probably null
R1929:Samd3	UTSW	10	26,139,884 (GRCm39)	splice site	probably benign
R2925:Samd3	UTSW	10	26,127,785 (GRCm39)	missense	probably benign	0.37
R5104:Samd3	UTSW	10	26,139,686 (GRCm39)	missense	possibly damaging	0.61
R5736:Samd3	UTSW	10	26,146,070 (GRCm39)	missense	probably damaging	1.00
R7120:Samd3	UTSW	10	26,106,864 (GRCm39)	missense	possibly damaging	0.77
R7437:Samd3	UTSW	10	26,146,004 (GRCm39)	missense	possibly damaging	0.78
R7510:Samd3	UTSW	10	26,106,006 (GRCm39)	missense	probably benign
R7599:Samd3	UTSW	10	26,139,711 (GRCm39)	missense	probably benign	0.00
R7801:Samd3	UTSW	10	26,139,770 (GRCm39)	missense	possibly damaging	0.57
R7806:Samd3	UTSW	10	26,120,425 (GRCm39)	missense	probably benign	0.19
R7820:Samd3	UTSW	10	26,109,416 (GRCm39)	splice site	probably null
R7929:Samd3	UTSW	10	26,127,813 (GRCm39)	missense	probably damaging	1.00
R8298:Samd3	UTSW	10	26,121,468 (GRCm39)	missense	probably damaging	1.00
R8979:Samd3	UTSW	10	26,120,428 (GRCm39)	missense	possibly damaging	0.93
R9381:Samd3	UTSW	10	26,147,643 (GRCm39)	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- TCTATAAGACTGACTGGCCTGC -3'
(R):5'- CTGTGAAGAGCATAGTCATGAAATG -3'

Sequencing Primer
(F):5'- GGAAACGAGCCCTCAAAG -3'
(R):5'- GTCAGCCATGCAAATCAT -3'

Posted On

2020-08-01