Incidental Mutation 'R8323:Sacm1l'
ID 643929
Institutional Source Beutler Lab
Gene Symbol Sacm1l
Ensembl Gene ENSMUSG00000025240
Gene Name SAC1 suppressor of actin mutations 1-like (yeast)
Synonyms SAC1, Sac1p
MMRRC Submission 067724-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R8323 (G1)
Quality Score 225.009
Status Not validated
Chromosome 9
Chromosomal Location 123358824-123421665 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 123377987 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 89 (V89A)
Ref Sequence ENSEMBL: ENSMUSP00000026270 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026270] [ENSMUST00000217045]
AlphaFold Q9EP69
Predicted Effect probably benign
Transcript: ENSMUST00000026270
AA Change: V89A

PolyPhen 2 Score 0.219 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000026270
Gene: ENSMUSG00000025240
AA Change: V89A

DomainStartEndE-ValueType
Pfam:Syja_N 58 346 4.7e-88 PFAM
low complexity region 400 415 N/A INTRINSIC
Blast:IPPc 416 500 3e-12 BLAST
transmembrane domain 521 543 N/A INTRINSIC
transmembrane domain 550 569 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000217045
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an integral membrane protein that is localized to the endoplasmic reticulum and golgi, and functions as a phosphoinositide lipid phosphatase. Studies in mammals suggest that this gene is involved in the organization of golgi membranes and the mitotic spindles. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2016]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A3galt2 T C 4: 128,649,351 (GRCm39) F6S probably benign Het
Braf T C 6: 39,620,058 (GRCm39) T507A possibly damaging Het
Catsperb A C 12: 101,375,658 (GRCm39) H24P probably benign Het
Ccdc57 G T 11: 120,788,750 (GRCm39) Q366K possibly damaging Het
Cep295 G T 9: 15,249,529 (GRCm39) T462K possibly damaging Het
Cep295 T A 9: 15,264,357 (GRCm39) R96S probably damaging Het
Cfap206 C T 4: 34,719,647 (GRCm39) E256K probably benign Het
Cfap251 A G 5: 123,435,588 (GRCm39) N1016S probably benign Het
Cldn13 A G 5: 134,943,828 (GRCm39) V119A probably benign Het
Csmd1 G T 8: 17,266,751 (GRCm39) C58* probably null Het
Csmd3 T C 15: 47,561,547 (GRCm39) Y1343C Het
Dcbld2 T A 16: 58,283,473 (GRCm39) probably null Het
Dnah14 A G 1: 181,532,109 (GRCm39) I2299V probably benign Het
Dsp C T 13: 38,356,806 (GRCm39) H229Y possibly damaging Het
Fam193b A T 13: 55,702,223 (GRCm39) C51* probably null Het
Fbxw10 G A 11: 62,767,506 (GRCm39) V781I probably benign Het
Fdps G T 3: 89,002,696 (GRCm39) P151T possibly damaging Het
Galk2 C T 2: 125,708,298 (GRCm39) H16Y probably benign Het
Gm1110 A G 9: 26,813,719 (GRCm39) probably null Het
Gm3727 C T 14: 7,261,693 (GRCm38) V204I probably benign Het
Gtf2h3 A G 5: 124,720,534 (GRCm39) I13V probably benign Het
H2-T24 T A 17: 36,328,431 (GRCm39) probably null Het
Heatr5a C T 12: 52,002,289 (GRCm39) V216M probably benign Het
Hspg2 C G 4: 137,246,290 (GRCm39) P1023A possibly damaging Het
Igfbp2 C T 1: 72,888,780 (GRCm39) P224S probably damaging Het
Igkv17-127 A G 6: 67,838,498 (GRCm39) I70V possibly damaging Het
Kif11 T A 19: 37,372,692 (GRCm39) F27I possibly damaging Het
Lcor T C 19: 41,572,036 (GRCm39) S264P probably benign Het
Lrrc28 G T 7: 67,245,455 (GRCm39) T137K unknown Het
Lyg1 T A 1: 37,989,018 (GRCm39) R67S probably damaging Het
Ms4a10 G A 19: 10,940,363 (GRCm39) Q255* probably null Het
Myo1h A G 5: 114,480,200 (GRCm39) R512G Het
Nmnat3 T C 9: 98,292,276 (GRCm39) Y174H probably damaging Het
Nrap T C 19: 56,378,255 (GRCm39) I19V probably benign Het
Nsf C A 11: 103,819,665 (GRCm39) V35L probably benign Het
Or1e30 A T 11: 73,677,766 (GRCm39) M1L probably damaging Het
Or2w6 T A 13: 21,843,302 (GRCm39) M64L possibly damaging Het
Osbpl9 A G 4: 108,965,119 (GRCm39) S116P probably benign Het
Pcdhb15 A C 18: 37,608,715 (GRCm39) E649A probably benign Het
Pcdhb8 T A 18: 37,488,476 (GRCm39) D51E probably benign Het
Plcl1 T A 1: 55,736,895 (GRCm39) D745E possibly damaging Het
Prss3 A G 6: 41,351,258 (GRCm39) L165P probably damaging Het
Psme4 T A 11: 30,793,532 (GRCm39) I1211N probably damaging Het
Rb1 A G 14: 73,503,023 (GRCm39) V416A probably benign Het
Rnf111 T A 9: 70,383,204 (GRCm39) Q243L probably benign Het
Sardh C T 2: 27,125,576 (GRCm39) D313N probably damaging Het
Scin T C 12: 40,129,681 (GRCm39) I371V probably benign Het
Scn10a C A 9: 119,438,462 (GRCm39) L1801F possibly damaging Het
Sele G A 1: 163,879,207 (GRCm39) V281M possibly damaging Het
Slc17a1 C A 13: 24,071,982 (GRCm39) T400K probably damaging Het
Slc22a28 T A 19: 8,108,788 (GRCm39) D118V probably damaging Het
Slc2a10 T A 2: 165,356,671 (GRCm39) F110L probably benign Het
Slc51a A G 16: 32,295,197 (GRCm39) S294P probably damaging Het
Snapc4 T C 2: 26,254,711 (GRCm39) E1271G probably benign Het
Spata31 C A 13: 65,070,065 (GRCm39) Q738K possibly damaging Het
Spdya A G 17: 71,895,587 (GRCm39) D284G probably benign Het
Tdrd5 T C 1: 156,094,832 (GRCm39) D757G possibly damaging Het
Tmem104 T C 11: 115,134,199 (GRCm39) F245S probably damaging Het
Tmem170 A T 8: 112,603,153 (GRCm39) S39T probably benign Het
Trim24 G T 6: 37,892,233 (GRCm39) probably null Het
Uap1 A G 1: 169,978,635 (GRCm39) V302A probably damaging Het
Vmn2r96 A T 17: 18,803,023 (GRCm39) Y311F probably damaging Het
Wdhd1 A T 14: 47,512,252 (GRCm39) D46E possibly damaging Het
Zdbf2 G A 1: 63,342,073 (GRCm39) V151I possibly damaging Het
Zfp747l1 A T 7: 126,983,621 (GRCm39) C494S possibly damaging Het
Zfp943 A G 17: 22,211,763 (GRCm39) Q283R possibly damaging Het
Zfp944 A T 17: 22,558,235 (GRCm39) D337E probably benign Het
Other mutations in Sacm1l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00821:Sacm1l APN 9 123,399,614 (GRCm39) missense possibly damaging 0.88
IGL02598:Sacm1l APN 9 123,408,061 (GRCm39) missense probably benign 0.03
IGL02796:Sacm1l UTSW 9 123,377,989 (GRCm39) missense possibly damaging 0.66
R0138:Sacm1l UTSW 9 123,377,982 (GRCm39) missense probably benign 0.15
R0628:Sacm1l UTSW 9 123,378,060 (GRCm39) splice site probably benign
R0847:Sacm1l UTSW 9 123,377,927 (GRCm39) missense probably damaging 1.00
R1102:Sacm1l UTSW 9 123,411,363 (GRCm39) missense probably damaging 0.98
R1159:Sacm1l UTSW 9 123,395,476 (GRCm39) missense probably benign 0.06
R2898:Sacm1l UTSW 9 123,389,666 (GRCm39) critical splice donor site probably null
R3001:Sacm1l UTSW 9 123,414,149 (GRCm39) splice site probably benign
R3780:Sacm1l UTSW 9 123,381,855 (GRCm39) missense probably benign 0.00
R3852:Sacm1l UTSW 9 123,416,641 (GRCm39) missense probably damaging 1.00
R4731:Sacm1l UTSW 9 123,419,895 (GRCm39) missense probably benign 0.03
R4732:Sacm1l UTSW 9 123,419,895 (GRCm39) missense probably benign 0.03
R4733:Sacm1l UTSW 9 123,419,895 (GRCm39) missense probably benign 0.03
R4894:Sacm1l UTSW 9 123,411,409 (GRCm39) missense probably benign 0.17
R5021:Sacm1l UTSW 9 123,411,393 (GRCm39) missense probably damaging 1.00
R5033:Sacm1l UTSW 9 123,415,464 (GRCm39) missense probably damaging 1.00
R5075:Sacm1l UTSW 9 123,411,327 (GRCm39) missense probably benign 0.00
R5135:Sacm1l UTSW 9 123,406,090 (GRCm39) missense probably benign 0.00
R5284:Sacm1l UTSW 9 123,415,485 (GRCm39) missense probably damaging 0.99
R5514:Sacm1l UTSW 9 123,415,419 (GRCm39) nonsense probably null
R5629:Sacm1l UTSW 9 123,395,464 (GRCm39) missense probably benign
R6137:Sacm1l UTSW 9 123,398,070 (GRCm39) missense probably damaging 1.00
R6266:Sacm1l UTSW 9 123,371,485 (GRCm39) missense probably damaging 1.00
R7079:Sacm1l UTSW 9 123,399,062 (GRCm39) missense probably damaging 1.00
R7147:Sacm1l UTSW 9 123,398,016 (GRCm39) missense probably damaging 1.00
R8205:Sacm1l UTSW 9 123,415,724 (GRCm39) splice site probably null
R8544:Sacm1l UTSW 9 123,406,123 (GRCm39) critical splice donor site probably null
R8801:Sacm1l UTSW 9 123,411,384 (GRCm39) missense probably damaging 1.00
R9131:Sacm1l UTSW 9 123,381,827 (GRCm39) nonsense probably null
R9165:Sacm1l UTSW 9 123,398,021 (GRCm39) missense probably damaging 1.00
R9732:Sacm1l UTSW 9 123,381,863 (GRCm39) missense probably benign 0.00
Z1177:Sacm1l UTSW 9 123,406,093 (GRCm39) missense possibly damaging 0.58
Predicted Primers PCR Primer
(F):5'- GAGGAGCTCAATGCAGTCTC -3'
(R):5'- GTATCTCCATGGATAGGTAGAAACAG -3'

Sequencing Primer
(F):5'- TGTGATATGCTAGGGCTCAAACC -3'
(R):5'- TCCATGGATAGGTAGAAACAGAGTAG -3'
Posted On 2020-09-02