Incidental Mutation 'R8324:Caprin1'
ID 643966
Institutional Source Beutler Lab
Gene Symbol Caprin1
Ensembl Gene ENSMUSG00000027184
Gene Name cell cycle associated protein 1
Synonyms caprin-1, RNG105, MMGPIP137, Gpiap1
MMRRC Submission 067725-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.489) question?
Stock # R8324 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 103762941-103797649 bp(-) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) G to A at 103783181 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 79 (R79*)
Ref Sequence ENSEMBL: ENSMUSP00000028607 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028607] [ENSMUST00000111147]
AlphaFold Q60865
Predicted Effect probably null
Transcript: ENSMUST00000028607
AA Change: R79*
SMART Domains Protein: ENSMUSP00000028607
Gene: ENSMUSG00000027184
AA Change: R79*

DomainStartEndE-ValueType
low complexity region 2 43 N/A INTRINSIC
coiled coil region 52 93 N/A INTRINSIC
low complexity region 176 186 N/A INTRINSIC
low complexity region 271 280 N/A INTRINSIC
low complexity region 309 322 N/A INTRINSIC
low complexity region 326 335 N/A INTRINSIC
Pfam:Caprin-1_C 365 681 1.4e-173 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000111147
AA Change: R79*
SMART Domains Protein: ENSMUSP00000106777
Gene: ENSMUSG00000027184
AA Change: R79*

DomainStartEndE-ValueType
low complexity region 2 43 N/A INTRINSIC
coiled coil region 52 93 N/A INTRINSIC
low complexity region 176 186 N/A INTRINSIC
low complexity region 271 280 N/A INTRINSIC
low complexity region 309 322 N/A INTRINSIC
low complexity region 326 335 N/A INTRINSIC
Pfam:Caprin-1_C 365 680 2.4e-135 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000143188
SMART Domains Protein: ENSMUSP00000114423
Gene: ENSMUSG00000027184

DomainStartEndE-ValueType
low complexity region 84 93 N/A INTRINSIC
low complexity region 122 135 N/A INTRINSIC
low complexity region 139 148 N/A INTRINSIC
Pfam:Caprin-1_C 178 254 4.2e-22 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased fetal size, bent posture, cyanosis, respiratory failure, and neonatal lethality with impaired neuronal network development and reduced dendritic localization of sodium potassium ATPase subunit isoform mRNAs. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 T C 11: 9,290,395 (GRCm38) S753P probably damaging Het
Acan A G 7: 79,091,056 (GRCm38) E390G probably damaging Het
Antxr2 T C 5: 97,938,509 (GRCm38) N413S probably damaging Het
Bace2 C T 16: 97,356,908 (GRCm38) A36V possibly damaging Het
Cdan1 A G 2: 120,727,325 (GRCm38) V507A probably benign Het
Cdkl3 T A 11: 52,022,879 (GRCm38) probably null Het
Chst5 A T 8: 111,890,508 (GRCm38) L160Q probably benign Het
Col11a1 C G 3: 114,164,410 (GRCm38) P1111R probably damaging Het
Col6a6 T A 9: 105,755,654 (GRCm38) E1470D probably benign Het
Cpped1 T A 16: 11,805,476 (GRCm38) T274S probably benign Het
Ctnnbl1 G A 2: 157,779,815 (GRCm38) E75K probably damaging Het
Cyp4f40 T C 17: 32,659,528 (GRCm38) S15P probably benign Het
Ddx46 T C 13: 55,663,914 (GRCm38) S643P probably damaging Het
Defb34 A G 8: 19,123,798 (GRCm38) Q16R probably null Het
Dhrs2 T A 14: 55,238,764 (GRCm38) V147E probably damaging Het
Dnah5 G T 15: 28,346,865 (GRCm38) R2498L probably damaging Het
Dpp10 T A 1: 123,854,172 (GRCm38) I93F probably benign Het
Eef1e1 T A 13: 38,655,069 (GRCm38) D104V probably damaging Het
Egfr A C 11: 16,908,885 (GRCm38) I955L probably damaging Het
Egfr A G 11: 16,858,971 (GRCm38) Y55C probably damaging Het
Ehbp1l1 C A 19: 5,719,998 (GRCm38) V426F possibly damaging Het
Elp1 C T 4: 56,772,491 (GRCm38) E877K probably damaging Het
Fam234a C T 17: 26,218,698 (GRCm38) V108I probably benign Het
Fzd8 T A 18: 9,214,688 (GRCm38) M590K probably damaging Het
Gm13287 T C 4: 88,803,638 (GRCm38) S129P probably damaging Het
Heatr5b A G 17: 78,755,364 (GRCm38) S1919P possibly damaging Het
Hspg2 C G 4: 137,518,979 (GRCm38) P1023A possibly damaging Het
Itpr2 T C 6: 146,328,398 (GRCm38) E1233G probably damaging Het
Kcnmb4 A G 10: 116,418,314 (GRCm38) L186P probably damaging Het
Krt72 T A 15: 101,782,145 (GRCm38) Y224F probably damaging Het
Loxhd1 T C 18: 77,339,579 (GRCm38) probably null Het
Lrguk A G 6: 34,102,571 (GRCm38) T914A probably benign Het
Lrrtm4 A G 6: 80,021,991 (GRCm38) T129A probably damaging Het
Mmp13 A T 9: 7,276,636 (GRCm38) I244F possibly damaging Het
Mob1a T A 6: 83,329,974 (GRCm38) L41Q probably damaging Het
Mtcl1 T C 17: 66,436,217 (GRCm38) R426G probably damaging Het
Mybbp1a T C 11: 72,445,288 (GRCm38) probably null Het
Myh9 A G 15: 77,788,917 (GRCm38) probably null Het
Myo1d T A 11: 80,557,521 (GRCm38) D926V probably damaging Het
Ncapg T G 5: 45,695,668 (GRCm38) H825Q probably damaging Het
Olfml1 T C 7: 107,590,363 (GRCm38) S212P probably benign Het
Or52p1 G A 7: 104,618,114 (GRCm38) R145H probably benign Het
Pak2 T C 16: 32,052,211 (GRCm38) N51S probably benign Het
Papln T C 12: 83,786,619 (GRCm38) Y1132H probably damaging Het
Pax3 T A 1: 78,193,789 (GRCm38) R134S probably damaging Het
Pdzrn4 A G 15: 92,770,937 (GRCm38) E990G probably damaging Het
Peak1 A T 9: 56,207,476 (GRCm38) W1394R probably damaging Het
Pkn2 T C 3: 142,829,010 (GRCm38) N285D probably benign Het
Pramel13 A C 4: 144,395,857 (GRCm38) L39R probably damaging Het
Prrc2a A G 17: 35,156,984 (GRCm38) S897P possibly damaging Het
Rad51 A G 2: 119,123,831 (GRCm38) T131A possibly damaging Het
Rc3h2 T A 2: 37,400,726 (GRCm38) T255S possibly damaging Het
Repin1 G T 6: 48,597,345 (GRCm38) E403* probably null Het
Rictor T A 15: 6,745,562 (GRCm38) V125E probably damaging Het
Rps6ka5 C T 12: 100,558,487 (GRCm38) D664N possibly damaging Het
Rreb1 T A 13: 37,947,621 (GRCm38) W1584R probably damaging Het
Rxra T C 2: 27,741,183 (GRCm38) I142T probably damaging Het
Sall2 T C 14: 52,312,886 (GRCm38) T951A probably benign Het
Slc15a2 T G 16: 36,759,307 (GRCm38) N359T probably damaging Het
Slc23a1 C T 18: 35,622,535 (GRCm38) G436E probably damaging Het
Slc6a13 T C 6: 121,337,414 (GRCm38) *603Q probably null Het
Sptb T C 12: 76,619,162 (GRCm38) D894G possibly damaging Het
Srgn A G 10: 62,507,665 (GRCm38) L17P probably damaging Het
Tmprss9 T C 10: 80,897,371 (GRCm38) probably null Het
Trav9n-4 T C 14: 53,294,946 (GRCm38) F86L probably benign Het
Trp63 A G 16: 25,876,734 (GRCm38) Y482C unknown Het
Ttc9b G T 7: 27,653,969 (GRCm38) A15S probably damaging Het
Urb1 A T 16: 90,791,190 (GRCm38) I410N probably damaging Het
Vmn2r82 A T 10: 79,378,893 (GRCm38) K237* probably null Het
Wwox G A 8: 114,489,005 (GRCm38) probably null Het
Other mutations in Caprin1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01356:Caprin1 APN 2 103,775,456 (GRCm38) missense probably benign 0.00
IGL01369:Caprin1 APN 2 103,768,865 (GRCm38) missense probably damaging 0.99
IGL02054:Caprin1 APN 2 103,771,798 (GRCm38) splice site probably null
IGL02260:Caprin1 APN 2 103,779,369 (GRCm38) missense probably damaging 1.00
IGL02526:Caprin1 APN 2 103,775,603 (GRCm38) unclassified probably benign
IGL03405:Caprin1 APN 2 103,779,505 (GRCm38) missense probably damaging 1.00
R0027:Caprin1 UTSW 2 103,775,580 (GRCm38) unclassified probably benign
R0396:Caprin1 UTSW 2 103,769,569 (GRCm38) missense probably damaging 0.99
R0603:Caprin1 UTSW 2 103,796,801 (GRCm38) missense probably benign 0.01
R1406:Caprin1 UTSW 2 103,775,987 (GRCm38) missense probably benign 0.39
R1406:Caprin1 UTSW 2 103,775,987 (GRCm38) missense probably benign 0.39
R1558:Caprin1 UTSW 2 103,775,987 (GRCm38) missense possibly damaging 0.75
R1657:Caprin1 UTSW 2 103,769,506 (GRCm38) missense probably damaging 0.99
R2945:Caprin1 UTSW 2 103,772,809 (GRCm38) missense probably benign 0.04
R3946:Caprin1 UTSW 2 103,796,766 (GRCm38) missense probably damaging 0.99
R5208:Caprin1 UTSW 2 103,769,433 (GRCm38) critical splice donor site probably null
R6108:Caprin1 UTSW 2 103,776,017 (GRCm38) missense possibly damaging 0.93
R6603:Caprin1 UTSW 2 103,775,511 (GRCm38) missense probably benign 0.01
R7247:Caprin1 UTSW 2 103,779,474 (GRCm38) missense possibly damaging 0.63
R7338:Caprin1 UTSW 2 103,779,423 (GRCm38) missense probably benign 0.01
R7624:Caprin1 UTSW 2 103,772,677 (GRCm38) missense possibly damaging 0.81
R7749:Caprin1 UTSW 2 103,771,754 (GRCm38) missense probably benign 0.03
R7946:Caprin1 UTSW 2 103,772,748 (GRCm38) missense probably damaging 0.99
R8304:Caprin1 UTSW 2 103,769,517 (GRCm38) missense probably damaging 1.00
R8547:Caprin1 UTSW 2 103,769,517 (GRCm38) missense probably damaging 1.00
R8549:Caprin1 UTSW 2 103,769,517 (GRCm38) missense probably damaging 1.00
R8782:Caprin1 UTSW 2 103,772,788 (GRCm38) missense probably benign 0.06
R8946:Caprin1 UTSW 2 103,778,033 (GRCm38) missense probably damaging 1.00
R9332:Caprin1 UTSW 2 103,773,045 (GRCm38) missense probably benign 0.00
R9758:Caprin1 UTSW 2 103,775,938 (GRCm38) missense possibly damaging 0.70
Z1177:Caprin1 UTSW 2 103,775,934 (GRCm38) missense probably null 1.00
Predicted Primers PCR Primer
(F):5'- TGCCATGAAACTCCTCTGTAATTC -3'
(R):5'- CAGCAATGGTCAGTGTTTCAAG -3'

Sequencing Primer
(F):5'- ACTCCAAATTATTTGTGACTTCCTGG -3'
(R):5'- GCAATGGTCAGTGTTTCAAGTTTAC -3'
Posted On 2020-09-02