Incidental Mutation 'R8329:Ldc1'
ID 644246
Institutional Source Beutler Lab
Gene Symbol Ldc1
Ensembl Gene ENSMUSG00000023120
Gene Name leucine decarboxylase 1
Synonyms Gm853, LOC332942
MMRRC Submission 067859-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.098) question?
Stock # R8329 (G1)
Quality Score 225.009
Status Validated
Chromosome 4
Chromosomal Location 130102902-130116194 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 130109156 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Methionine at position 295 (V295M)
Ref Sequence ENSEMBL: ENSMUSP00000023884 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023884]
AlphaFold Q3UNZ2
Predicted Effect possibly damaging
Transcript: ENSMUST00000023884
AA Change: V295M

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000023884
Gene: ENSMUSG00000023120
AA Change: V295M

DomainStartEndE-ValueType
Pfam:Orn_Arg_deC_N 56 294 3.6e-79 PFAM
Pfam:Orn_DAP_Arg_deC 263 410 4.3e-23 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.9%
Validation Efficiency 100% (62/62)
Allele List at MGI

All alleles(2) : Targeted, other(2)

Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933430I17Rik T A 4: 62,461,978 (GRCm39) probably null Het
Ackr4 A G 9: 103,976,660 (GRCm39) F96L possibly damaging Het
Aco1 T C 4: 40,186,376 (GRCm39) I596T possibly damaging Het
Aff3 G A 1: 38,244,135 (GRCm39) R879W probably benign Het
Apob A G 12: 8,061,135 (GRCm39) R3206G probably damaging Het
Atg7 T A 6: 114,663,057 (GRCm39) D224E possibly damaging Het
Capn12 T C 7: 28,582,626 (GRCm39) F167S probably damaging Het
Ccdc3 T G 2: 5,233,848 (GRCm39) V224G probably damaging Het
Ces4a G A 8: 105,874,714 (GRCm39) V452I probably damaging Het
Cherp G A 8: 73,215,852 (GRCm39) R834C Het
Clptm1l T A 13: 73,760,547 (GRCm39) I310N probably damaging Het
Cog3 A T 14: 75,978,003 (GRCm39) D230E probably damaging Het
Crb1 T A 1: 139,165,005 (GRCm39) I1101F probably damaging Het
Cts6 A T 13: 61,343,282 (GRCm39) M313K probably damaging Het
Cyp2c66 T A 19: 39,174,906 (GRCm39) C435* probably null Het
Defb13 A G 8: 22,438,562 (GRCm39) E40G probably benign Het
Dis3l T C 9: 64,219,112 (GRCm39) D606G possibly damaging Het
Dop1b T C 16: 93,568,675 (GRCm39) L1579P probably damaging Het
Foxa3 A G 7: 18,748,109 (GRCm39) V339A probably benign Het
Gcn1 G A 5: 115,747,921 (GRCm39) G1776E probably damaging Het
Gls2 A G 10: 128,037,154 (GRCm39) T232A probably benign Het
Gprc6a A T 10: 51,503,355 (GRCm39) Y169* probably null Het
Guca2b T C 4: 119,516,001 (GRCm39) S18G unknown Het
Hars2 A G 18: 36,922,288 (GRCm39) D301G possibly damaging Het
Haus5 T A 7: 30,358,984 (GRCm39) Q226L possibly damaging Het
Hc G A 2: 34,902,910 (GRCm39) probably null Het
Hivep2 T C 10: 14,004,011 (GRCm39) V203A probably damaging Het
Hoxc8 A G 15: 102,899,543 (GRCm39) Y111C probably damaging Het
Hoxd13 G T 2: 74,498,661 (GRCm39) R3L probably benign Het
Hspa8 T G 9: 40,713,897 (GRCm39) I130S probably damaging Het
Ier5l C A 2: 30,362,861 (GRCm39) C388F possibly damaging Het
Lmx1a A G 1: 167,517,372 (GRCm39) N10S probably benign Het
Map2 T C 1: 66,454,272 (GRCm39) I1054T probably benign Het
Me1 C T 9: 86,501,790 (GRCm39) D268N probably damaging Het
Muc6 G A 7: 141,226,525 (GRCm39) P1501S unknown Het
Myo1d T C 11: 80,528,900 (GRCm39) M641V probably benign Het
Nuggc G A 14: 65,878,731 (GRCm39) R667K probably benign Het
Oprl1 T A 2: 181,360,717 (GRCm39) C231S probably damaging Het
Or11g26 T C 14: 50,753,015 (GRCm39) F118S probably damaging Het
Or13p10 A C 4: 118,523,604 (GRCm39) N297H probably damaging Het
Pard3b C A 1: 62,676,957 (GRCm39) Q1163K probably benign Het
Pik3c2a T C 7: 116,017,283 (GRCm39) Y158C probably damaging Het
Prune2 T G 19: 17,098,629 (GRCm39) S1378A probably benign Het
Ralgps2 G T 1: 156,712,110 (GRCm39) T158K probably damaging Het
Rbm42 T A 7: 30,344,582 (GRCm39) E227V unknown Het
Ripor3 T C 2: 167,825,119 (GRCm39) R797G possibly damaging Het
Ryr3 T A 2: 112,492,855 (GRCm39) H3764L possibly damaging Het
Sbno2 T C 10: 79,900,221 (GRCm39) Y541C probably damaging Het
Scn5a A G 9: 119,365,030 (GRCm39) V396A probably damaging Het
Slc36a3 A G 11: 55,039,409 (GRCm39) L73P probably damaging Het
Spag16 T C 1: 69,934,407 (GRCm39) I278T probably benign Het
Stx18 T A 5: 38,285,450 (GRCm39) L274* probably null Het
Terb1 A T 8: 105,211,003 (GRCm39) N341K probably damaging Het
Timm29 A G 9: 21,505,001 (GRCm39) Y223C probably damaging Het
Tmprss2 T A 16: 97,369,665 (GRCm39) M370L probably benign Het
Tmtc3 T A 10: 100,283,296 (GRCm39) N753I probably damaging Het
Tnpo3 A T 6: 29,558,832 (GRCm39) C699* probably null Het
Trav5d-4 G A 14: 53,239,208 (GRCm39) W13* probably null Het
Trdn A G 10: 33,320,074 (GRCm39) probably null Het
Tsg101 A T 7: 46,558,808 (GRCm39) Y68N probably damaging Het
Ttn A G 2: 76,664,062 (GRCm39) V11649A unknown Het
Wnk2 A T 13: 49,248,914 (GRCm39) V379D probably damaging Het
Xpnpep1 A G 19: 52,990,903 (GRCm39) probably null Het
Yme1l1 C T 2: 23,054,597 (GRCm39) Q139* probably null Het
Other mutations in Ldc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01111:Ldc1 APN 4 130,115,518 (GRCm39) missense probably benign 0.01
IGL01485:Ldc1 APN 4 130,109,218 (GRCm39) missense probably benign 0.02
1mM(1):Ldc1 UTSW 4 130,110,374 (GRCm39) missense probably benign 0.04
PIT4382001:Ldc1 UTSW 4 130,112,954 (GRCm39) missense possibly damaging 0.94
R0762:Ldc1 UTSW 4 130,115,417 (GRCm39) missense probably damaging 0.98
R0846:Ldc1 UTSW 4 130,115,417 (GRCm39) missense probably benign 0.10
R1070:Ldc1 UTSW 4 130,112,949 (GRCm39) missense probably benign 0.14
R1918:Ldc1 UTSW 4 130,105,186 (GRCm39) missense probably benign
R2117:Ldc1 UTSW 4 130,109,156 (GRCm39) missense possibly damaging 0.53
R2566:Ldc1 UTSW 4 130,103,681 (GRCm39) missense probably benign 0.14
R4110:Ldc1 UTSW 4 130,112,967 (GRCm39) missense probably damaging 0.99
R5033:Ldc1 UTSW 4 130,115,408 (GRCm39) critical splice donor site probably null
R5658:Ldc1 UTSW 4 130,114,234 (GRCm39) missense probably benign 0.00
R5751:Ldc1 UTSW 4 130,114,234 (GRCm39) missense probably benign 0.05
R6283:Ldc1 UTSW 4 130,115,534 (GRCm39) missense probably benign 0.00
R6993:Ldc1 UTSW 4 130,112,106 (GRCm39) missense probably damaging 1.00
R7224:Ldc1 UTSW 4 130,112,992 (GRCm39) missense probably damaging 1.00
R7773:Ldc1 UTSW 4 130,114,169 (GRCm39) missense probably damaging 1.00
R8254:Ldc1 UTSW 4 130,114,136 (GRCm39) missense probably benign 0.06
R8888:Ldc1 UTSW 4 130,105,223 (GRCm39) missense probably benign 0.09
R8895:Ldc1 UTSW 4 130,105,223 (GRCm39) missense probably benign 0.09
R9262:Ldc1 UTSW 4 130,114,153 (GRCm39) missense possibly damaging 0.48
R9680:Ldc1 UTSW 4 130,115,527 (GRCm39) missense probably benign
Z1176:Ldc1 UTSW 4 130,115,497 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- CCTCAGTGCAGGGTAGACTTAC -3'
(R):5'- TGGCTATGGTAGGGACACAG -3'

Sequencing Primer
(F):5'- GGTAGACTTACCTTTGTCTCCG -3'
(R):5'- CTATGGTAGGGACACAGGGAAG -3'
Posted On 2020-09-02