Mutagenetix > Incidental Mutation

Incidental Mutation 'R8329:Nuggc'

644281

Institutional Source

Beutler Lab

Gene Symbol

Nuggc

Ensembl Gene

ENSMUSG00000061356

Gene Name

nuclear GTPase, germinal center associated

Synonyms

Gm600, SLIP-GC, LOC239151

MMRRC Submission

067859-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R8329 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

65598546-65648531 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 65641282 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Lysine at position 667 (R667K)

Ref Sequence

ENSEMBL: ENSMUSP00000078434 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079469] [ENSMUST00000150897]

AlphaFold

D3YWJ0

Predicted Effect

probably benign
Transcript: ENSMUST00000079469
AA Change: R667K

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000078434
Gene: ENSMUSG00000061356
AA Change: R667K

Domain	Start	End	E-Value	Type
Pfam:Dynamin_N	119	372	2.2e-15	PFAM
low complexity region	406	421	N/A	INTRINSIC
Blast:AAA	434	739	4e-14	BLAST
coiled coil region	758	792	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150897
AA Change: R651K

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000118402
Gene: ENSMUSG00000061356
AA Change: R651K

Domain	Start	End	E-Value	Type
Pfam:Dynamin_N	103	356	6.1e-16	PFAM
low complexity region	390	405	N/A	INTRINSIC
Blast:AAA	418	723	4e-14	BLAST
coiled coil region	742	776	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

100% (62/62)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased somatic mutation frequency immunoglobulin and non-immunoglobulin loci in B cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933430I17Rik	T	A	4: 62,543,741		probably null	Het
Ackr4	A	G	9: 104,099,461	F96L	possibly damaging	Het
Aco1	T	C	4: 40,186,376	I596T	possibly damaging	Het
Aff3	G	A	1: 38,205,054	R879W	probably benign	Het
Apob	A	G	12: 8,011,135	R3206G	probably damaging	Het
Atg7	T	A	6: 114,686,096	D224E	possibly damaging	Het
Capn12	T	C	7: 28,883,201	F167S	probably damaging	Het
Ccdc3	T	G	2: 5,229,037	V224G	probably damaging	Het
Ces4a	G	A	8: 105,148,082	V452I	probably damaging	Het
Cherp	G	A	8: 72,462,008	R834C		Het
Clptm1l	T	A	13: 73,612,428	I310N	probably damaging	Het
Cog3	A	T	14: 75,740,563	D230E	probably damaging	Het
Crb1	T	A	1: 139,237,267	I1101F	probably damaging	Het
Cts6	A	T	13: 61,195,468	M313K	probably damaging	Het
Cyp2c66	T	A	19: 39,186,462	C435*	probably null	Het
Defb13	A	G	8: 21,948,546	E40G	probably benign	Het
Dis3l	T	C	9: 64,311,830	D606G	possibly damaging	Het
Dopey2	T	C	16: 93,771,787	L1579P	probably damaging	Het
Foxa3	A	G	7: 19,014,184	V339A	probably benign	Het
Gcn1l1	G	A	5: 115,609,862	G1776E	probably damaging	Het
Gls2	A	G	10: 128,201,285	T232A	probably benign	Het
Gm853	C	T	4: 130,215,363	V295M	possibly damaging	Het
Gprc6a	A	T	10: 51,627,259	Y169*	probably null	Het
Guca2b	T	C	4: 119,658,804	S18G	unknown	Het
Hars2	A	G	18: 36,789,235	D301G	possibly damaging	Het
Haus5	T	A	7: 30,659,559	Q226L	possibly damaging	Het
Hc	G	A	2: 35,012,898		probably null	Het
Hivep2	T	C	10: 14,128,267	V203A	probably damaging	Het
Hoxc8	A	G	15: 102,991,111	Y111C	probably damaging	Het
Hoxd13	G	T	2: 74,668,317	R3L	probably benign	Het
Hspa8	T	G	9: 40,802,601	I130S	probably damaging	Het
Ier5l	C	A	2: 30,472,849	C388F	possibly damaging	Het
Lmx1a	A	G	1: 167,689,803	N10S	probably benign	Het
Map2	T	C	1: 66,415,113	I1054T	probably benign	Het
Me1	C	T	9: 86,619,737	D268N	probably damaging	Het
Muc6	G	A	7: 141,640,258	P1501S	unknown	Het
Myo1d	T	C	11: 80,638,074	M641V	probably benign	Het
Olfr62	A	C	4: 118,666,407	N297H	probably damaging	Het
Olfr742	T	C	14: 50,515,558	F118S	probably damaging	Het
Oprl1	T	A	2: 181,718,924	C231S	probably damaging	Het
Pard3b	C	A	1: 62,637,798	Q1163K	probably benign	Het
Pik3c2a	T	C	7: 116,418,048	Y158C	probably damaging	Het
Prune2	T	G	19: 17,121,265	S1378A	probably benign	Het
Ralgps2	G	T	1: 156,884,540	T158K	probably damaging	Het
Rbm42	T	A	7: 30,645,157	E227V	unknown	Het
Ripor3	T	C	2: 167,983,199	R797G	possibly damaging	Het
Ryr3	T	A	2: 112,662,510	H3764L	possibly damaging	Het
Sbno2	T	C	10: 80,064,387	Y541C	probably damaging	Het
Scn5a	A	G	9: 119,535,964	V396A	probably damaging	Het
Slc36a3	A	G	11: 55,148,583	L73P	probably damaging	Het
Spag16	T	C	1: 69,895,248	I278T	probably benign	Het
Stx18	T	A	5: 38,128,106	L274*	probably null	Het
Terb1	A	T	8: 104,484,371	N341K	probably damaging	Het
Timm29	A	G	9: 21,593,705	Y223C	probably damaging	Het
Tmprss2	T	A	16: 97,568,465	M370L	probably benign	Het
Tmtc3	T	A	10: 100,447,434	N753I	probably damaging	Het
Tnpo3	A	T	6: 29,558,833	C699*	probably null	Het
Trav5d-4	G	A	14: 53,001,751	W13*	probably null	Het
Trdn	A	G	10: 33,444,078		probably null	Het
Tsg101	A	T	7: 46,909,060	Y68N	probably damaging	Het
Ttn	A	G	2: 76,833,718	V11649A	unknown	Het
Wnk2	A	T	13: 49,095,438	V379D	probably damaging	Het
Xpnpep1	A	G	19: 53,002,472		probably null	Het
Yme1l1	C	T	2: 23,164,585	Q139*	probably null	Het

Other mutations in Nuggc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01359:Nuggc	APN	14	65623207	missense	probably damaging	1.00
IGL01403:Nuggc	APN	14	65623186	missense	probably benign	0.01
IGL01413:Nuggc	APN	14	65638581	missense	probably benign	0.23
IGL02588:Nuggc	APN	14	65617777	splice site	probably benign
R0102:Nuggc	UTSW	14	65613551	missense	probably null	1.00
R0102:Nuggc	UTSW	14	65613551	missense	probably null	1.00
R0395:Nuggc	UTSW	14	65613472	nonsense	probably null
R0827:Nuggc	UTSW	14	65608891	missense	probably damaging	1.00
R1496:Nuggc	UTSW	14	65624133	missense	probably damaging	0.96
R1861:Nuggc	UTSW	14	65642001	splice site	probably benign
R1986:Nuggc	UTSW	14	65641921	missense	probably damaging	0.98
R1995:Nuggc	UTSW	14	65611174	missense	probably benign	0.02
R2283:Nuggc	UTSW	14	65638612	missense	possibly damaging	0.89
R2317:Nuggc	UTSW	14	65624142	missense	possibly damaging	0.81
R3799:Nuggc	UTSW	14	65619638	missense	probably benign	0.00
R3980:Nuggc	UTSW	14	65619093	critical splice donor site	probably null
R4303:Nuggc	UTSW	14	65611172	missense	possibly damaging	0.77
R4431:Nuggc	UTSW	14	65611210	missense	probably benign	0.19
R4734:Nuggc	UTSW	14	65623230	missense	probably damaging	1.00
R5095:Nuggc	UTSW	14	65635090	nonsense	probably null
R5108:Nuggc	UTSW	14	65638680	missense	probably damaging	0.99
R5360:Nuggc	UTSW	14	65638626	missense	probably damaging	1.00
R5547:Nuggc	UTSW	14	65641881	missense	possibly damaging	0.87
R5636:Nuggc	UTSW	14	65648188	nonsense	probably null
R6494:Nuggc	UTSW	14	65648222	missense	probably damaging	1.00
R6922:Nuggc	UTSW	14	65617643	missense	probably damaging	1.00
R6971:Nuggc	UTSW	14	65608856	missense	probably benign	0.04
R7124:Nuggc	UTSW	14	65608802	missense	probably damaging	1.00
R7273:Nuggc	UTSW	14	65619608	missense	probably damaging	0.99
R7282:Nuggc	UTSW	14	65617623	missense	probably damaging	1.00
R7578:Nuggc	UTSW	14	65648174	missense	probably damaging	1.00
R7670:Nuggc	UTSW	14	65613526	missense	probably damaging	1.00
R7780:Nuggc	UTSW	14	65645041	missense	probably damaging	1.00
R7871:Nuggc	UTSW	14	65623251	missense	probably benign	0.01
R8250:Nuggc	UTSW	14	65641869	missense	probably benign	0.10
R8334:Nuggc	UTSW	14	65645029	missense	probably benign	0.04
R8463:Nuggc	UTSW	14	65613562	missense	probably damaging	1.00
R8503:Nuggc	UTSW	14	65641348	critical splice donor site	probably null
R8737:Nuggc	UTSW	14	65645086	missense	probably benign	0.00
R8861:Nuggc	UTSW	14	65610035	critical splice donor site	probably null
R8914:Nuggc	UTSW	14	65641905	missense	probably benign
R9573:Nuggc	UTSW	14	65611154	missense	probably benign	0.37
R9666:Nuggc	UTSW	14	65619596	missense	possibly damaging	0.86
R9792:Nuggc	UTSW	14	65609896	missense	probably damaging	1.00
R9793:Nuggc	UTSW	14	65609896	missense	probably damaging	1.00
R9795:Nuggc	UTSW	14	65609896	missense	probably damaging	1.00
RF019:Nuggc	UTSW	14	65648264	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAGCTGGGATGTGACATGTG -3'
(R):5'- TAGGTTGAGAATGCCACCAG -3'

Sequencing Primer
(F):5'- CAGTTTGAGGGTACAGTCCATCAC -3'
(R):5'- TGCCACCAGAAGTTGATTGG -3'

Posted On

2020-09-02