Incidental Mutation 'R8343:Nynrin'
ID |
645041 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Nynrin
|
Ensembl Gene |
ENSMUSG00000075592 |
Gene Name |
NYN domain and retroviral integrase containing |
Synonyms |
|
MMRRC Submission |
067866-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R8343 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
14 |
Chromosomal Location |
56091572-56112193 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 56101248 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 306
(T306A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000098098
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000100529]
[ENSMUST00000168479]
[ENSMUST00000227465]
|
AlphaFold |
Q5DTZ0 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000100529
AA Change: T306A
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000098098 Gene: ENSMUSG00000075592 AA Change: T306A
Domain | Start | End | E-Value | Type |
low complexity region
|
581 |
606 |
N/A |
INTRINSIC |
Pfam:RNase_Zc3h12a
|
739 |
890 |
1.6e-54 |
PFAM |
low complexity region
|
938 |
952 |
N/A |
INTRINSIC |
low complexity region
|
1212 |
1228 |
N/A |
INTRINSIC |
low complexity region
|
1390 |
1397 |
N/A |
INTRINSIC |
PDB:3S3O|B
|
1478 |
1706 |
6e-8 |
PDB |
SCOP:d1cxqa_
|
1552 |
1646 |
2e-12 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000168479
AA Change: T306A
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000129557 Gene: ENSMUSG00000075592 AA Change: T306A
Domain | Start | End | E-Value | Type |
low complexity region
|
581 |
606 |
N/A |
INTRINSIC |
Pfam:RNase_Zc3h12a
|
739 |
890 |
5.5e-54 |
PFAM |
low complexity region
|
938 |
952 |
N/A |
INTRINSIC |
low complexity region
|
1212 |
1228 |
N/A |
INTRINSIC |
low complexity region
|
1390 |
1397 |
N/A |
INTRINSIC |
PDB:3S3O|B
|
1478 |
1706 |
6e-8 |
PDB |
SCOP:d1cxqa_
|
1552 |
1646 |
2e-12 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000227465
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 98.9%
|
Validation Efficiency |
97% (64/66) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 70 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aars1 |
T |
A |
8: 111,767,361 (GRCm39) |
W156R |
probably damaging |
Het |
Acvr1 |
T |
A |
2: 58,364,286 (GRCm39) |
|
probably null |
Het |
Adamts2 |
G |
T |
11: 50,494,315 (GRCm39) |
V130L |
probably damaging |
Het |
Adcy4 |
C |
T |
14: 56,012,697 (GRCm39) |
V541I |
probably benign |
Het |
Adgrl2 |
C |
T |
3: 148,552,542 (GRCm39) |
V654I |
probably damaging |
Het |
Ago3 |
T |
A |
4: 126,270,721 (GRCm39) |
K258* |
probably null |
Het |
Akap11 |
A |
T |
14: 78,749,929 (GRCm39) |
S819R |
|
Het |
Alox5ap |
T |
C |
5: 149,224,419 (GRCm39) |
F121L |
probably damaging |
Het |
Baz2b |
A |
T |
2: 59,731,858 (GRCm39) |
M2060K |
probably damaging |
Het |
Bltp3b |
T |
C |
10: 89,627,281 (GRCm39) |
S449P |
probably benign |
Het |
C030005K15Rik |
T |
C |
10: 97,561,414 (GRCm39) |
I106V |
unknown |
Het |
Carmil2 |
T |
A |
8: 106,417,716 (GRCm39) |
S604T |
probably benign |
Het |
Ccdc121rt2 |
C |
T |
5: 112,598,653 (GRCm39) |
T400I |
probably benign |
Het |
Cdhr1 |
T |
C |
14: 36,813,935 (GRCm39) |
T164A |
probably benign |
Het |
Dhx30 |
T |
C |
9: 109,914,569 (GRCm39) |
E976G |
possibly damaging |
Het |
Dnah17 |
C |
T |
11: 118,005,021 (GRCm39) |
G788R |
probably benign |
Het |
Dus2 |
T |
C |
8: 106,722,645 (GRCm39) |
|
probably benign |
Het |
Etv6 |
T |
C |
6: 134,225,717 (GRCm39) |
V316A |
possibly damaging |
Het |
Fabp9 |
T |
G |
3: 10,259,085 (GRCm39) |
K107T |
possibly damaging |
Het |
Fmn2 |
CCCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATATCTCCCCTACCTCCTCTCCCTGGAATGGGAATACCTCC |
CCCTCCTCTCCCTGGAATGGGAATACCTCCCCCACCTCCTCTCCCTGGAATGGGAATATCTCCCCTACCTCCTCTCCCTGGAATGGGAATACCTCC |
1: 174,436,769 (GRCm39) |
|
probably benign |
Het |
Gapdh |
A |
G |
6: 125,140,226 (GRCm39) |
V92A |
probably benign |
Het |
Gfy |
A |
G |
7: 44,826,019 (GRCm39) |
L453P |
probably damaging |
Het |
Gp2 |
C |
T |
7: 119,042,010 (GRCm39) |
C505Y |
probably benign |
Het |
Gtpbp8 |
T |
C |
16: 44,566,676 (GRCm39) |
R9G |
probably benign |
Het |
Hipk4 |
G |
T |
7: 27,223,033 (GRCm39) |
R31L |
probably damaging |
Het |
Htt |
T |
A |
5: 35,063,068 (GRCm39) |
M2900K |
probably damaging |
Het |
Ighv1-20 |
T |
C |
12: 114,687,810 (GRCm39) |
I6V |
probably benign |
Het |
Il17d |
C |
T |
14: 57,779,937 (GRCm39) |
T153I |
probably damaging |
Het |
Izumo3 |
T |
A |
4: 92,034,581 (GRCm39) |
N117I |
probably damaging |
Het |
Kcnh7 |
T |
C |
2: 62,680,879 (GRCm39) |
D236G |
probably benign |
Het |
Kmt2d |
T |
C |
15: 98,750,478 (GRCm39) |
D2405G |
unknown |
Het |
Map4k2 |
T |
C |
19: 6,396,596 (GRCm39) |
W533R |
probably damaging |
Het |
Matn1 |
C |
A |
4: 130,673,300 (GRCm39) |
Y89* |
probably null |
Het |
Mettl18 |
T |
A |
1: 163,824,509 (GRCm39) |
Y277N |
probably damaging |
Het |
Muc5b |
G |
A |
7: 141,417,898 (GRCm39) |
G3615S |
probably benign |
Het |
Mycbp2 |
A |
C |
14: 103,398,111 (GRCm39) |
|
probably null |
Het |
Myh4 |
T |
A |
11: 67,143,390 (GRCm39) |
S1041T |
possibly damaging |
Het |
Myl10 |
G |
C |
5: 136,726,825 (GRCm39) |
V70L |
probably benign |
Het |
Naaladl1 |
T |
C |
19: 6,159,703 (GRCm39) |
V378A |
possibly damaging |
Het |
Nars1 |
T |
C |
18: 64,637,458 (GRCm39) |
D374G |
probably benign |
Het |
Neb |
C |
T |
2: 52,198,283 (GRCm39) |
|
probably null |
Het |
Neurl1b |
A |
G |
17: 26,650,965 (GRCm39) |
Y79C |
probably damaging |
Het |
Ola1 |
G |
T |
2: 73,029,745 (GRCm39) |
R125S |
probably damaging |
Het |
Or12d15 |
T |
A |
17: 37,694,122 (GRCm39) |
F221L |
probably benign |
Het |
Or51a43 |
A |
T |
7: 103,717,383 (GRCm39) |
V285D |
probably damaging |
Het |
Pak1ip1 |
C |
A |
13: 41,158,214 (GRCm39) |
T29K |
probably benign |
Het |
Podnl1 |
T |
A |
8: 84,857,402 (GRCm39) |
L337H |
|
Het |
Rictor |
T |
G |
15: 6,807,800 (GRCm39) |
|
probably null |
Het |
Rsf1 |
ATGGCG |
ATGGCGACGGTGGCG |
7: 97,229,111 (GRCm39) |
|
probably benign |
Het |
Sel1l2 |
T |
C |
2: 140,072,753 (GRCm39) |
I627M |
probably benign |
Het |
Sh3rf2 |
T |
C |
18: 42,244,493 (GRCm39) |
S352P |
probably damaging |
Het |
Slc6a6 |
G |
A |
6: 91,703,224 (GRCm39) |
W199* |
probably null |
Het |
Smc2 |
T |
A |
4: 52,450,965 (GRCm39) |
V261E |
probably benign |
Het |
Sorcs3 |
G |
A |
19: 48,692,808 (GRCm39) |
|
probably null |
Het |
Spdye4a |
T |
A |
5: 143,211,562 (GRCm39) |
M1L |
probably benign |
Het |
Stag1 |
T |
C |
9: 100,639,819 (GRCm39) |
I125T |
possibly damaging |
Het |
Stx8 |
T |
A |
11: 67,911,814 (GRCm39) |
D177E |
probably benign |
Het |
Sun2 |
T |
C |
15: 79,623,125 (GRCm39) |
Y71C |
probably damaging |
Het |
Tmed9 |
T |
C |
13: 55,742,617 (GRCm39) |
F129L |
probably benign |
Het |
Tmem216 |
T |
A |
19: 10,529,336 (GRCm39) |
T17S |
probably benign |
Het |
Tmpo |
A |
T |
10: 90,997,974 (GRCm39) |
N604K |
probably benign |
Het |
Tmprss11f |
T |
A |
5: 86,681,666 (GRCm39) |
I196F |
probably benign |
Het |
Tnks |
A |
G |
8: 35,301,738 (GRCm39) |
F1244L |
probably benign |
Het |
Tspan2 |
T |
C |
3: 102,676,226 (GRCm39) |
C212R |
probably damaging |
Het |
Tspan4 |
A |
G |
7: 141,071,718 (GRCm39) |
D155G |
probably damaging |
Het |
Ttc6 |
T |
C |
12: 57,707,282 (GRCm39) |
F730L |
possibly damaging |
Het |
Txnrd2 |
G |
A |
16: 18,245,291 (GRCm39) |
A33T |
unknown |
Het |
Wnk1 |
C |
T |
6: 119,940,454 (GRCm39) |
R761H |
probably damaging |
Het |
Zfp217 |
T |
C |
2: 169,962,024 (GRCm39) |
D101G |
probably damaging |
Het |
Zfp281 |
T |
C |
1: 136,555,620 (GRCm39) |
F866S |
probably damaging |
Het |
|
Other mutations in Nynrin |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01020:Nynrin
|
APN |
14 |
56,105,905 (GRCm39) |
missense |
probably benign |
0.38 |
IGL01131:Nynrin
|
APN |
14 |
56,110,142 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01357:Nynrin
|
APN |
14 |
56,107,874 (GRCm39) |
missense |
probably benign |
|
IGL01537:Nynrin
|
APN |
14 |
56,109,502 (GRCm39) |
missense |
possibly damaging |
0.87 |
IGL01583:Nynrin
|
APN |
14 |
56,107,968 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01726:Nynrin
|
APN |
14 |
56,101,611 (GRCm39) |
missense |
probably benign |
|
IGL02161:Nynrin
|
APN |
14 |
56,101,441 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02167:Nynrin
|
APN |
14 |
56,100,792 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02247:Nynrin
|
APN |
14 |
56,109,167 (GRCm39) |
nonsense |
probably null |
|
IGL02302:Nynrin
|
APN |
14 |
56,105,962 (GRCm39) |
missense |
probably benign |
0.43 |
IGL02524:Nynrin
|
APN |
14 |
56,108,931 (GRCm39) |
missense |
possibly damaging |
0.73 |
IGL02600:Nynrin
|
APN |
14 |
56,101,449 (GRCm39) |
missense |
probably benign |
0.38 |
IGL02639:Nynrin
|
APN |
14 |
56,108,112 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02654:Nynrin
|
APN |
14 |
56,100,716 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL02659:Nynrin
|
APN |
14 |
56,103,554 (GRCm39) |
unclassified |
probably benign |
|
IGL02736:Nynrin
|
APN |
14 |
56,108,366 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02949:Nynrin
|
APN |
14 |
56,109,837 (GRCm39) |
missense |
probably damaging |
0.99 |
PIT4458001:Nynrin
|
UTSW |
14 |
56,101,425 (GRCm39) |
missense |
probably benign |
0.39 |
R0017:Nynrin
|
UTSW |
14 |
56,109,852 (GRCm39) |
missense |
probably damaging |
1.00 |
R0078:Nynrin
|
UTSW |
14 |
56,100,789 (GRCm39) |
missense |
probably damaging |
1.00 |
R0211:Nynrin
|
UTSW |
14 |
56,109,255 (GRCm39) |
missense |
probably benign |
0.08 |
R0211:Nynrin
|
UTSW |
14 |
56,109,255 (GRCm39) |
missense |
probably benign |
0.08 |
R0413:Nynrin
|
UTSW |
14 |
56,109,648 (GRCm39) |
missense |
possibly damaging |
0.90 |
R0609:Nynrin
|
UTSW |
14 |
56,110,218 (GRCm39) |
missense |
probably damaging |
1.00 |
R0626:Nynrin
|
UTSW |
14 |
56,105,492 (GRCm39) |
missense |
probably damaging |
1.00 |
R1205:Nynrin
|
UTSW |
14 |
56,091,646 (GRCm39) |
intron |
probably benign |
|
R1222:Nynrin
|
UTSW |
14 |
56,100,998 (GRCm39) |
missense |
probably benign |
0.02 |
R1385:Nynrin
|
UTSW |
14 |
56,102,356 (GRCm39) |
missense |
probably benign |
0.00 |
R1820:Nynrin
|
UTSW |
14 |
56,107,835 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1829:Nynrin
|
UTSW |
14 |
56,110,404 (GRCm39) |
missense |
possibly damaging |
0.50 |
R1874:Nynrin
|
UTSW |
14 |
56,100,950 (GRCm39) |
missense |
probably benign |
0.04 |
R1927:Nynrin
|
UTSW |
14 |
56,101,049 (GRCm39) |
missense |
probably benign |
0.00 |
R2233:Nynrin
|
UTSW |
14 |
56,109,524 (GRCm39) |
missense |
possibly damaging |
0.83 |
R3018:Nynrin
|
UTSW |
14 |
56,100,867 (GRCm39) |
missense |
probably benign |
0.00 |
R3154:Nynrin
|
UTSW |
14 |
56,101,044 (GRCm39) |
missense |
possibly damaging |
0.46 |
R3853:Nynrin
|
UTSW |
14 |
56,101,562 (GRCm39) |
missense |
probably benign |
0.24 |
R4648:Nynrin
|
UTSW |
14 |
56,110,351 (GRCm39) |
nonsense |
probably null |
|
R4722:Nynrin
|
UTSW |
14 |
56,091,852 (GRCm39) |
missense |
probably damaging |
0.97 |
R4735:Nynrin
|
UTSW |
14 |
56,107,625 (GRCm39) |
missense |
probably benign |
0.03 |
R4736:Nynrin
|
UTSW |
14 |
56,101,454 (GRCm39) |
missense |
probably damaging |
1.00 |
R4780:Nynrin
|
UTSW |
14 |
56,100,720 (GRCm39) |
missense |
probably damaging |
1.00 |
R4804:Nynrin
|
UTSW |
14 |
56,102,326 (GRCm39) |
missense |
probably benign |
|
R4816:Nynrin
|
UTSW |
14 |
56,109,458 (GRCm39) |
missense |
probably damaging |
1.00 |
R5307:Nynrin
|
UTSW |
14 |
56,101,263 (GRCm39) |
missense |
probably damaging |
1.00 |
R5372:Nynrin
|
UTSW |
14 |
56,105,948 (GRCm39) |
missense |
probably benign |
0.01 |
R5432:Nynrin
|
UTSW |
14 |
56,101,923 (GRCm39) |
missense |
possibly damaging |
0.80 |
R5800:Nynrin
|
UTSW |
14 |
56,108,088 (GRCm39) |
missense |
probably damaging |
1.00 |
R5825:Nynrin
|
UTSW |
14 |
56,101,683 (GRCm39) |
missense |
probably benign |
0.00 |
R6149:Nynrin
|
UTSW |
14 |
56,091,780 (GRCm39) |
missense |
possibly damaging |
0.83 |
R6244:Nynrin
|
UTSW |
14 |
56,105,485 (GRCm39) |
missense |
probably damaging |
1.00 |
R6350:Nynrin
|
UTSW |
14 |
56,105,533 (GRCm39) |
missense |
probably benign |
0.19 |
R6379:Nynrin
|
UTSW |
14 |
56,107,848 (GRCm39) |
missense |
probably damaging |
1.00 |
R6437:Nynrin
|
UTSW |
14 |
56,109,227 (GRCm39) |
missense |
probably benign |
0.00 |
R6501:Nynrin
|
UTSW |
14 |
56,100,989 (GRCm39) |
missense |
probably benign |
|
R6702:Nynrin
|
UTSW |
14 |
56,101,935 (GRCm39) |
missense |
possibly damaging |
0.80 |
R6703:Nynrin
|
UTSW |
14 |
56,101,935 (GRCm39) |
missense |
possibly damaging |
0.80 |
R6907:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6908:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6928:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6934:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R6935:Nynrin
|
UTSW |
14 |
56,101,335 (GRCm39) |
missense |
probably benign |
0.20 |
R7197:Nynrin
|
UTSW |
14 |
56,109,380 (GRCm39) |
missense |
probably benign |
0.00 |
R7204:Nynrin
|
UTSW |
14 |
56,110,190 (GRCm39) |
missense |
probably damaging |
1.00 |
R7272:Nynrin
|
UTSW |
14 |
56,107,872 (GRCm39) |
missense |
probably damaging |
1.00 |
R7335:Nynrin
|
UTSW |
14 |
56,101,371 (GRCm39) |
missense |
probably benign |
|
R7361:Nynrin
|
UTSW |
14 |
56,107,857 (GRCm39) |
missense |
possibly damaging |
0.71 |
R7368:Nynrin
|
UTSW |
14 |
56,107,968 (GRCm39) |
missense |
probably damaging |
1.00 |
R7443:Nynrin
|
UTSW |
14 |
56,108,873 (GRCm39) |
missense |
probably benign |
0.18 |
R7584:Nynrin
|
UTSW |
14 |
56,109,041 (GRCm39) |
missense |
probably damaging |
1.00 |
R7677:Nynrin
|
UTSW |
14 |
56,107,693 (GRCm39) |
missense |
probably benign |
|
R7723:Nynrin
|
UTSW |
14 |
56,109,502 (GRCm39) |
missense |
possibly damaging |
0.87 |
R7776:Nynrin
|
UTSW |
14 |
56,103,420 (GRCm39) |
missense |
probably damaging |
1.00 |
R7787:Nynrin
|
UTSW |
14 |
56,107,980 (GRCm39) |
missense |
probably benign |
|
R7842:Nynrin
|
UTSW |
14 |
56,102,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R7852:Nynrin
|
UTSW |
14 |
56,108,886 (GRCm39) |
missense |
probably damaging |
0.96 |
R8040:Nynrin
|
UTSW |
14 |
56,108,982 (GRCm39) |
missense |
probably benign |
0.01 |
R8159:Nynrin
|
UTSW |
14 |
56,102,517 (GRCm39) |
missense |
probably benign |
|
R8159:Nynrin
|
UTSW |
14 |
56,100,587 (GRCm39) |
missense |
probably damaging |
0.99 |
R8258:Nynrin
|
UTSW |
14 |
56,100,815 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8259:Nynrin
|
UTSW |
14 |
56,100,815 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8504:Nynrin
|
UTSW |
14 |
56,107,703 (GRCm39) |
missense |
probably benign |
0.01 |
R8671:Nynrin
|
UTSW |
14 |
56,107,899 (GRCm39) |
missense |
possibly damaging |
0.52 |
R8691:Nynrin
|
UTSW |
14 |
56,110,106 (GRCm39) |
missense |
probably damaging |
1.00 |
R8777:Nynrin
|
UTSW |
14 |
56,109,120 (GRCm39) |
missense |
probably benign |
|
R8777-TAIL:Nynrin
|
UTSW |
14 |
56,109,120 (GRCm39) |
missense |
probably benign |
|
R9041:Nynrin
|
UTSW |
14 |
56,108,753 (GRCm39) |
missense |
possibly damaging |
0.83 |
R9346:Nynrin
|
UTSW |
14 |
56,100,495 (GRCm39) |
missense |
probably benign |
0.01 |
R9366:Nynrin
|
UTSW |
14 |
56,100,587 (GRCm39) |
missense |
probably damaging |
0.99 |
R9690:Nynrin
|
UTSW |
14 |
56,108,204 (GRCm39) |
missense |
probably benign |
0.00 |
RF007:Nynrin
|
UTSW |
14 |
56,103,658 (GRCm39) |
splice site |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- AGCTAGCACGGTAAGTACTGG -3'
(R):5'- CAGTTCATTGATCTTCCAGAAGG -3'
Sequencing Primer
(F):5'- CTAGCACGGTAAGTACTGGAAAAG -3'
(R):5'- TGGCAGCAATGGTCCCTG -3'
|
Posted On |
2020-09-02 |