Mutagenetix > Incidental Mutation

Incidental Mutation 'R8377:Gbp4'

646734

Institutional Source

Beutler Lab

Gene Symbol

Gbp4

Ensembl Gene

ENSMUSG00000079363

Gene Name

guanylate binding protein 4

Synonyms

Mpa2, Mpa-2, Mag-2

MMRRC Submission

067745-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8377 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

105263633-105287452 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 105266328 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 571 (Q571L)

Ref Sequence

ENSEMBL: ENSMUSP00000098522 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031235] [ENSMUST00000100961] [ENSMUST00000100962] [ENSMUST00000196204] [ENSMUST00000196677] [ENSMUST00000199629]

AlphaFold

A4UUI3

Predicted Effect

probably benign
Transcript: ENSMUST00000031235

SMART Domains

Protein: ENSMUSP00000031235
Gene: ENSMUSG00000034438

Domain	Start	End	E-Value	Type
Pfam:GBP	16	213	5.4e-91	PFAM
Pfam:GBP_C	206	493	1e-115	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100961

SMART Domains

Protein: ENSMUSP00000098521
Gene: ENSMUSG00000029298

Domain	Start	End	E-Value	Type
Pfam:GBP	16	279	3.8e-124	PFAM
Pfam:GBP_C	281	575	4.5e-115	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100962
AA Change: Q571L

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000098522
Gene: ENSMUSG00000079363
AA Change: Q571L

Domain	Start	End	E-Value	Type
Pfam:GBP	16	287	4.2e-91	PFAM
Pfam:GBP_C	289	583	4.4e-117	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000196204

SMART Domains

Protein: ENSMUSP00000142528
Gene: ENSMUSG00000079363

Domain	Start	End	E-Value	Type
Pfam:GBP	16	76	1e-19	PFAM
low complexity region	82	103	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000196677

SMART Domains

Protein: ENSMUSP00000142795
Gene: ENSMUSG00000079363

Domain	Start	End	E-Value	Type
Pfam:GBP	1	149	3e-56	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000199629

SMART Domains

Protein: ENSMUSP00000143689
Gene: ENSMUSG00000079363

Domain	Start	End	E-Value	Type
Pfam:GBP	1	127	1.5e-43	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot3	C	A	12: 84,105,561 (GRCm39)	C251*	probably null	Het
Acsbg1	A	G	9: 54,529,789 (GRCm39)	C273R	probably damaging	Het
Adh6a	A	G	3: 138,031,884 (GRCm39)	T259A	probably damaging	Het
Aknad1	A	G	3: 108,689,255 (GRCm39)	H639R	possibly damaging	Het
Alkal2	G	T	12: 30,934,850 (GRCm39)	G23V	probably damaging	Het
Ampd3	A	G	7: 110,399,937 (GRCm39)	R342G	probably damaging	Het
Arid5b	G	T	10: 67,933,217 (GRCm39)	A895E	probably damaging	Het
BB014433	GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTACACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG	GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG	8: 15,092,160 (GRCm39)		probably benign	Het
Bmp8a	G	T	4: 123,236,482 (GRCm39)	P7Q	unknown	Het
Boll	A	C	1: 55,362,837 (GRCm39)	V187G	possibly damaging	Het
Ccdc162	A	T	10: 41,457,306 (GRCm39)	C1544S	probably benign	Het
Cmss1	A	C	16: 57,127,757 (GRCm39)	M182R	possibly damaging	Het
Cntn3	T	C	6: 102,186,254 (GRCm39)	M578V	probably benign	Het
Dmxl2	A	T	9: 54,286,032 (GRCm39)	W2718R	probably damaging	Het
Dsg1a	T	A	18: 20,466,831 (GRCm39)	I567N	probably damaging	Het
Epc2	T	A	2: 49,412,527 (GRCm39)	D168E	probably damaging	Het
Ern2	G	A	7: 121,780,515 (GRCm39)	Q162*	probably null	Het
F11r	G	T	1: 171,265,111 (GRCm39)		probably benign	Het
Fcgrt	T	C	7: 44,751,987 (GRCm39)	Y59C	probably damaging	Het
Fmn2	G	T	1: 174,436,011 (GRCm39)	E661*	probably null	Het
Gm29106	A	T	1: 118,126,593 (GRCm39)	H95L	probably damaging	Het
Gphn	G	A	12: 78,711,280 (GRCm39)	V621M	probably damaging	Het
Grwd1	T	C	7: 45,480,036 (GRCm39)	Y57C	probably damaging	Het
Insyn2b	C	A	11: 34,351,964 (GRCm39)	A2D	probably damaging	Het
Irs2	G	A	8: 11,054,848 (GRCm39)	Q1195*	probably null	Het
Itpr1	G	C	6: 108,487,699 (GRCm39)	C2375S	probably benign	Het
Kcnmb4	A	T	10: 116,282,290 (GRCm39)	Y136N	probably benign	Het
Matn2	C	T	15: 34,345,511 (GRCm39)	P173S	probably damaging	Het
Med17	A	C	9: 15,173,655 (GRCm39)	D606E	probably damaging	Het
Mpl	A	G	4: 118,301,254 (GRCm39)	V537A		Het
Mrpl1	C	G	5: 96,374,226 (GRCm39)	A167G	probably benign	Het
Mrpl21	T	C	19: 3,342,487 (GRCm39)	F206S	unknown	Het
Msh6	T	A	17: 88,292,598 (GRCm39)	M451K	probably damaging	Het
Myo10	T	C	15: 25,804,481 (GRCm39)	I1592T	possibly damaging	Het
Naip1	A	T	13: 100,562,374 (GRCm39)	D930E	possibly damaging	Het
Necap2	T	C	4: 140,795,534 (GRCm39)	I242V	probably benign	Het
Nfya	A	G	17: 48,699,073 (GRCm39)	V240A	possibly damaging	Het
Olfml2b	A	G	1: 170,496,353 (GRCm39)	D328G	probably damaging	Het
Or10ak13	A	T	4: 118,639,203 (GRCm39)	M193K	probably benign	Het
Or4k35	T	A	2: 111,099,983 (GRCm39)	H243L	probably damaging	Het
Or5b24	T	G	19: 12,912,399 (GRCm39)	V99G	probably benign	Het
Or5p53	T	G	7: 107,532,892 (GRCm39)	L55R	probably damaging	Het
Phf8-ps	C	A	17: 33,286,038 (GRCm39)	A255S	probably benign	Het
Pkd1l3	T	C	8: 110,361,982 (GRCm39)	V1018A	probably benign	Het
Plcg1	T	C	2: 160,596,842 (GRCm39)	L761P	probably damaging	Het
Ppp1r36	T	C	12: 76,485,215 (GRCm39)	S313P	possibly damaging	Het
Ptpru	C	A	4: 131,535,646 (GRCm39)	G444C	probably damaging	Het
Rfxank	A	T	8: 70,587,960 (GRCm39)	V149D	probably damaging	Het
Rimbp2	G	A	5: 128,857,395 (GRCm39)	H819Y	probably damaging	Het
Sgms1	T	C	19: 32,101,821 (GRCm39)	Y395C	probably damaging	Het
Siae	G	A	9: 37,542,901 (GRCm39)		probably null	Het
Slc46a2	T	A	4: 59,914,713 (GRCm39)	D70V	probably damaging	Het
Smpdl3a	A	C	10: 57,677,032 (GRCm39)	L43F	possibly damaging	Het
Spcs1	T	A	14: 30,722,103 (GRCm39)	D146V	possibly damaging	Het
Srcin1	T	C	11: 97,442,804 (GRCm39)	D8G	probably damaging	Het
Stra6	G	T	9: 58,056,488 (GRCm39)	L373F	probably damaging	Het
Tacc1	A	T	8: 25,672,299 (GRCm39)	S310T	possibly damaging	Het
Tlr12	T	C	4: 128,509,566 (GRCm39)	S895G	probably benign	Het
Tnfaip3	A	G	10: 18,887,258 (GRCm39)	V89A	probably damaging	Het
Top1	C	T	2: 160,488,009 (GRCm39)		probably benign	Het
Trappc13	T	G	13: 104,297,509 (GRCm39)	I132L	probably benign	Het
Trpt1	C	T	19: 6,976,349 (GRCm39)	Q249*	probably null	Het
Tsnaxip1	A	C	8: 106,569,179 (GRCm39)	K510Q	probably damaging	Het
Usp39	A	T	6: 72,305,657 (GRCm39)	N375K	probably benign	Het
Vldlr	T	A	19: 27,212,258 (GRCm39)	C91S	probably damaging	Het
Vmn1r232	T	A	17: 21,134,239 (GRCm39)	L120F	probably benign	Het
Vmn2r71	T	C	7: 85,264,707 (GRCm39)	V13A	probably benign	Het
Wdr11	T	A	7: 129,208,412 (GRCm39)	V389E	possibly damaging	Het
Wsb2	A	T	5: 117,514,766 (GRCm39)	I321F	possibly damaging	Het
Zan	A	T	5: 137,389,949 (GRCm39)	V4841E	unknown	Het
Zfy1	A	T	Y: 725,723 (GRCm39)	F681I	possibly damaging	Het
Zpld1	C	A	16: 55,067,017 (GRCm39)	E179D	probably benign	Het

Other mutations in Gbp4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01307:Gbp4	APN	5	105,284,887 (GRCm39)	start codon destroyed	probably null	0.00
IGL01834:Gbp4	APN	5	105,273,468 (GRCm39)	missense	probably damaging	1.00
IGL02100:Gbp4	APN	5	105,269,941 (GRCm39)	unclassified	probably benign
IGL02119:Gbp4	APN	5	105,268,908 (GRCm39)	missense	probably benign	0.14
IGL02364:Gbp4	APN	5	105,284,740 (GRCm39)	missense	probably damaging	1.00
IGL03026:Gbp4	APN	5	105,267,866 (GRCm39)	missense	possibly damaging	0.88
PIT4651001:Gbp4	UTSW	5	105,266,289 (GRCm39)	missense	probably benign	0.08
R0147:Gbp4	UTSW	5	105,267,362 (GRCm39)	missense	probably benign	0.17
R0148:Gbp4	UTSW	5	105,267,362 (GRCm39)	missense	probably benign	0.17
R0413:Gbp4	UTSW	5	105,268,972 (GRCm39)	missense	possibly damaging	0.85
R0415:Gbp4	UTSW	5	105,268,972 (GRCm39)	missense	possibly damaging	0.85
R0478:Gbp4	UTSW	5	105,267,299 (GRCm39)	missense	probably benign	0.01
R0546:Gbp4	UTSW	5	105,268,836 (GRCm39)	missense	probably damaging	1.00
R0638:Gbp4	UTSW	5	105,269,706 (GRCm39)	missense	probably damaging	0.98
R1528:Gbp4	UTSW	5	105,269,658 (GRCm39)	splice site	probably null
R1541:Gbp4	UTSW	5	105,266,275 (GRCm39)	missense	probably benign
R2099:Gbp4	UTSW	5	105,268,947 (GRCm39)	missense	probably damaging	1.00
R2112:Gbp4	UTSW	5	105,283,042 (GRCm39)	missense	possibly damaging	0.95
R2994:Gbp4	UTSW	5	105,284,886 (GRCm39)	start codon destroyed	probably null	0.86
R4021:Gbp4	UTSW	5	105,268,789 (GRCm39)	missense	probably damaging	0.96
R4258:Gbp4	UTSW	5	105,284,841 (GRCm39)	missense	probably damaging	1.00
R4489:Gbp4	UTSW	5	105,269,773 (GRCm39)	missense	probably damaging	1.00
R5164:Gbp4	UTSW	5	105,284,743 (GRCm39)	nonsense	probably null
R5195:Gbp4	UTSW	5	105,267,398 (GRCm39)	missense	probably benign	0.00
R5406:Gbp4	UTSW	5	105,267,387 (GRCm39)	missense	possibly damaging	0.76
R5550:Gbp4	UTSW	5	105,269,911 (GRCm39)	missense	probably damaging	1.00
R5701:Gbp4	UTSW	5	105,266,265 (GRCm39)	missense	possibly damaging	0.60
R5814:Gbp4	UTSW	5	105,267,785 (GRCm39)	missense	probably benign	0.27
R6128:Gbp4	UTSW	5	105,283,030 (GRCm39)	missense	possibly damaging	0.93
R6307:Gbp4	UTSW	5	105,270,975 (GRCm39)	nonsense	probably null
R6513:Gbp4	UTSW	5	105,270,986 (GRCm39)	missense	possibly damaging	0.69
R6870:Gbp4	UTSW	5	105,273,444 (GRCm39)	missense	probably damaging	1.00
R6938:Gbp4	UTSW	5	105,282,943 (GRCm39)	missense	probably damaging	0.99
R7063:Gbp4	UTSW	5	105,266,314 (GRCm39)	missense	probably damaging	0.96
R7124:Gbp4	UTSW	5	105,267,825 (GRCm39)	missense	possibly damaging	0.45
R7457:Gbp4	UTSW	5	105,267,419 (GRCm39)	missense	probably damaging	0.98
R7615:Gbp4	UTSW	5	105,270,848 (GRCm39)	missense	possibly damaging	0.95
R7877:Gbp4	UTSW	5	105,266,161 (GRCm39)	missense	probably benign	0.34
R7905:Gbp4	UTSW	5	105,268,953 (GRCm39)	missense	probably damaging	1.00
R8274:Gbp4	UTSW	5	105,267,338 (GRCm39)	missense	probably benign	0.01
R8414:Gbp4	UTSW	5	105,284,703 (GRCm39)	missense	probably benign	0.05
R8423:Gbp4	UTSW	5	105,267,800 (GRCm39)	missense	probably damaging	1.00
R8979:Gbp4	UTSW	5	105,267,248 (GRCm39)	missense	probably benign	0.00
R9485:Gbp4	UTSW	5	105,269,796 (GRCm39)	missense	probably damaging	1.00
R9579:Gbp4	UTSW	5	105,270,947 (GRCm39)	missense	probably damaging	1.00
R9598:Gbp4	UTSW	5	105,284,740 (GRCm39)	missense	probably damaging	1.00
S24628:Gbp4	UTSW	5	105,268,972 (GRCm39)	missense	possibly damaging	0.85
X0067:Gbp4	UTSW	5	105,273,491 (GRCm39)	missense	probably damaging	0.98
Z1088:Gbp4	UTSW	5	105,268,863 (GRCm39)	missense	probably damaging	1.00
Z1177:Gbp4	UTSW	5	105,273,001 (GRCm39)	missense	probably null	0.89
Z1177:Gbp4	UTSW	5	105,267,315 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CCAGATGCCCTTTAATCAGCAC -3'
(R):5'- AGGTCTCACTTTGGTGCATC -3'

Sequencing Primer
(F):5'- CACAAAGTGTGTATCACAGTCTATCC -3'
(R):5'- CATCTTGTTCATGGTAAGGGAAAG -3'

Posted On

2020-09-02