Incidental Mutation 'R8382:Or10d5'
| ID |
646986 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or10d5
|
| Ensembl Gene |
ENSMUSG00000043331 |
| Gene Name |
olfactory receptor family 10 subfamily D member 5 |
| Synonyms |
MOR224-2, GA_x6K02T2PVTD-33651220-33650288, Olfr975 |
| MMRRC Submission |
067896-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.055)
|
| Stock # |
R8382 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
9 |
| Chromosomal Location |
39861133-39862065 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 39861455 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 204
(V204A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150664
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000054067]
[ENSMUST00000169307]
[ENSMUST00000213171]
[ENSMUST00000213246]
[ENSMUST00000216647]
[ENSMUST00000217630]
|
| AlphaFold |
Q8VG91 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054067
AA Change: V204A
PolyPhen 2
Score 0.206 (Sensitivity: 0.92; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000059776
Gene: ENSMUSG00000043331
AA Change: V204A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
304 |
1.9e-51 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
33 |
249 |
1.8e-7 |
PFAM |
|
Pfam:7tm_1
|
39 |
286 |
3.6e-25 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169307
|
| SMART Domains |
Protein: ENSMUSP00000133083
Gene: ENSMUSG00000047352
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
43 |
318 |
1.5e-48 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
47 |
271 |
1.1e-5 |
PFAM |
|
Pfam:7tm_1
|
53 |
300 |
2.8e-22 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213171
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213246
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216647
AA Change: V204A
PolyPhen 2
Score 0.206 (Sensitivity: 0.92; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000217630
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.4%
- 20x: 97.6%
|
| Validation Efficiency |
94% (33/35) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
T |
C |
6: 128,537,645 (GRCm39) |
R689G |
probably benign |
Het |
| Anapc4 |
T |
A |
5: 53,016,277 (GRCm39) |
|
probably null |
Het |
| Atg9a |
G |
A |
1: 75,162,342 (GRCm39) |
Q523* |
probably null |
Het |
| Cacna1i |
G |
A |
15: 80,261,017 (GRCm39) |
V1342M |
probably damaging |
Het |
| Cblif |
A |
T |
19: 11,727,090 (GRCm39) |
T100S |
probably benign |
Het |
| Ccdc87 |
A |
G |
19: 4,890,018 (GRCm39) |
D170G |
possibly damaging |
Het |
| Cpsf1 |
A |
G |
15: 76,485,151 (GRCm39) |
V541A |
probably benign |
Het |
| Depdc5 |
C |
T |
5: 33,085,242 (GRCm39) |
T687M |
probably benign |
Het |
| Ear6 |
T |
C |
14: 52,091,570 (GRCm39) |
I39T |
probably damaging |
Het |
| Fcgbp |
C |
T |
7: 27,816,762 (GRCm39) |
A2408V |
probably benign |
Het |
| Frmd4b |
G |
A |
6: 97,282,209 (GRCm39) |
T539I |
probably benign |
Het |
| Gm19410 |
T |
A |
8: 36,276,302 (GRCm39) |
V1653D |
probably damaging |
Het |
| Jade1 |
A |
G |
3: 41,519,369 (GRCm39) |
|
probably null |
Het |
| Kncn |
A |
G |
4: 115,743,947 (GRCm39) |
N75S |
probably benign |
Het |
| Lig4 |
C |
T |
8: 10,022,346 (GRCm39) |
G478D |
probably damaging |
Het |
| Med24 |
G |
A |
11: 98,608,537 (GRCm39) |
T205I |
unknown |
Het |
| Meiob |
A |
G |
17: 25,046,913 (GRCm39) |
E179G |
possibly damaging |
Het |
| Nalf1 |
T |
C |
8: 9,257,972 (GRCm39) |
E392G |
probably benign |
Het |
| Or4a27 |
A |
T |
2: 88,559,857 (GRCm39) |
F29I |
probably damaging |
Het |
| Or8b44 |
A |
T |
9: 38,410,588 (GRCm39) |
I208F |
probably damaging |
Het |
| Pcdh15 |
T |
C |
10: 74,479,227 (GRCm39) |
V708A |
probably benign |
Het |
| Pclo |
T |
A |
5: 14,727,080 (GRCm39) |
D1979E |
unknown |
Het |
| Plxnd1 |
A |
T |
6: 115,949,433 (GRCm39) |
H784Q |
probably benign |
Het |
| Prim1 |
A |
T |
10: 127,856,138 (GRCm39) |
|
probably null |
Het |
| Rnf17 |
TG |
T |
14: 56,661,999 (GRCm39) |
132 |
probably null |
Het |
| Rsf1 |
CGGCGGCGG |
CGGCGGCGGGGGCGGCGG |
7: 97,229,124 (GRCm39) |
|
probably benign |
Het |
| Slc7a5 |
A |
T |
8: 122,612,691 (GRCm39) |
I371N |
probably damaging |
Het |
| Sp140l2 |
G |
A |
1: 85,224,671 (GRCm39) |
S288L |
possibly damaging |
Het |
| Spata31e3 |
T |
C |
13: 50,401,474 (GRCm39) |
K284R |
possibly damaging |
Het |
| Taf1c |
G |
T |
8: 120,329,789 (GRCm39) |
D117E |
probably damaging |
Het |
| Tekt5 |
T |
C |
16: 10,212,928 (GRCm39) |
D119G |
probably benign |
Het |
| Top3b |
T |
C |
16: 16,705,867 (GRCm39) |
I508T |
probably damaging |
Het |
| Uba6 |
A |
G |
5: 86,279,196 (GRCm39) |
I673T |
probably benign |
Het |
| Vmn2r17 |
G |
T |
5: 109,576,387 (GRCm39) |
M419I |
probably benign |
Het |
| Zfr |
C |
T |
15: 12,153,054 (GRCm39) |
Q562* |
probably null |
Het |
| Zfyve16 |
A |
T |
13: 92,650,328 (GRCm39) |
D885E |
probably benign |
Het |
|
| Other mutations in Or10d5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01480:Or10d5
|
APN |
9 |
39,861,284 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01537:Or10d5
|
APN |
9 |
39,861,921 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01963:Or10d5
|
APN |
9 |
39,861,536 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02400:Or10d5
|
APN |
9 |
39,861,635 (GRCm39) |
missense |
probably benign |
|
|
IGL03115:Or10d5
|
APN |
9 |
39,862,040 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL03226:Or10d5
|
APN |
9 |
39,861,719 (GRCm39) |
splice site |
probably null |
|
|
R0088:Or10d5
|
UTSW |
9 |
39,861,671 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0212:Or10d5
|
UTSW |
9 |
39,861,236 (GRCm39) |
missense |
probably benign |
0.44 |
|
R1668:Or10d5
|
UTSW |
9 |
39,861,465 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R1878:Or10d5
|
UTSW |
9 |
39,862,053 (GRCm39) |
missense |
probably benign |
0.35 |
|
R2225:Or10d5
|
UTSW |
9 |
39,861,833 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R2291:Or10d5
|
UTSW |
9 |
39,861,630 (GRCm39) |
missense |
probably benign |
0.19 |
|
R2420:Or10d5
|
UTSW |
9 |
39,861,824 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R2421:Or10d5
|
UTSW |
9 |
39,861,824 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R2422:Or10d5
|
UTSW |
9 |
39,861,824 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R2425:Or10d5
|
UTSW |
9 |
39,861,137 (GRCm39) |
missense |
probably null |
0.25 |
|
R2918:Or10d5
|
UTSW |
9 |
39,861,660 (GRCm39) |
missense |
probably benign |
|
|
R4536:Or10d5
|
UTSW |
9 |
39,861,731 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4709:Or10d5
|
UTSW |
9 |
39,861,165 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4831:Or10d5
|
UTSW |
9 |
39,861,408 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4921:Or10d5
|
UTSW |
9 |
39,861,521 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5113:Or10d5
|
UTSW |
9 |
39,861,221 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5141:Or10d5
|
UTSW |
9 |
39,861,170 (GRCm39) |
missense |
probably benign |
0.07 |
|
R5195:Or10d5
|
UTSW |
9 |
39,861,975 (GRCm39) |
missense |
probably benign |
|
|
R5213:Or10d5
|
UTSW |
9 |
39,861,389 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5568:Or10d5
|
UTSW |
9 |
39,861,983 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6993:Or10d5
|
UTSW |
9 |
39,861,933 (GRCm39) |
missense |
probably benign |
|
|
R7080:Or10d5
|
UTSW |
9 |
39,861,444 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7436:Or10d5
|
UTSW |
9 |
39,861,349 (GRCm39) |
nonsense |
probably null |
|
|
R8178:Or10d5
|
UTSW |
9 |
39,861,708 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8179:Or10d5
|
UTSW |
9 |
39,861,708 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8402:Or10d5
|
UTSW |
9 |
39,861,713 (GRCm39) |
missense |
probably benign |
0.39 |
|
R8511:Or10d5
|
UTSW |
9 |
39,861,455 (GRCm39) |
missense |
probably benign |
0.21 |
|
R8798:Or10d5
|
UTSW |
9 |
39,862,013 (GRCm39) |
missense |
probably benign |
0.40 |
|
R9068:Or10d5
|
UTSW |
9 |
39,862,087 (GRCm39) |
unclassified |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CTGAATCCAGCCAAGGACTG -3'
(R):5'- TCACCCTTTGAGGTACACAGTC -3'
Sequencing Primer
(F):5'- GGACTGGAGGCAGGTCTG -3'
(R):5'- CACAGTCATAATGAGTTCATGGGTG -3'
|
| Posted On |
2020-09-02 |
Incidental Mutation