Mutagenetix > Incidental Mutation

Incidental Mutation 'R8397:Dennd4a'

647663

Institutional Source

Beutler Lab

Gene Symbol

Dennd4a

Ensembl Gene

ENSMUSG00000053641

Gene Name

DENN domain containing 4A

Synonyms

F730015K02Rik

MMRRC Submission

067760-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.465) question?

Stock #

R8397 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

64718622-64826949 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 64796391 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 806 (M806L)

Ref Sequence

ENSEMBL: ENSMUSP00000037915 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038890]

AlphaFold

E9Q8V6

Predicted Effect

probably benign
Transcript: ENSMUST00000038890
AA Change: M806L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000037915
Gene: ENSMUSG00000053641
AA Change: M806L

Domain	Start	End	E-Value	Type
internal_repeat_1	45	93	3.26e-5	PROSPERO
uDENN	169	276	1.71e-28	SMART
DENN	309	493	2.4e-73	SMART
dDENN	559	633	4.15e-27	SMART
low complexity region	724	735	N/A	INTRINSIC
low complexity region	936	950	N/A	INTRINSIC
low complexity region	1176	1191	N/A	INTRINSIC
low complexity region	1249	1262	N/A	INTRINSIC
low complexity region	1402	1417	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DENN domain-containing protein that may function as a guanine nucleotide exchange factor that specifically activates ras-related protein Rab-10. This protein also contains a interferon stimulated response element-binding domain and may be involved in regulating the v-myc avian myelocytomatosis viral (MYC) oncogene. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Mar 2016]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrg3	A	G	8: 95,767,141 (GRCm39)	T499A	probably benign	Het
Ahsa1	G	T	12: 87,320,451 (GRCm39)	E311*	probably null	Het
Apol9a	C	T	15: 77,288,813 (GRCm39)	V185I	probably benign	Het
Arhgap27	T	A	11: 103,224,073 (GRCm39)	D580V	probably damaging	Het
Arpp21	A	C	9: 111,978,440 (GRCm39)	S298A	possibly damaging	Het
B4galnt2	T	A	11: 95,756,989 (GRCm39)	T481S	probably benign	Het
Cct8	G	A	16: 87,290,651 (GRCm39)	R59C	possibly damaging	Het
Cdhr5	C	T	7: 140,851,801 (GRCm39)	G501E	possibly damaging	Het
Chka	G	A	19: 3,902,414 (GRCm39)		probably null	Het
Cit	C	A	5: 116,024,856 (GRCm39)	N366K	probably benign	Het
Dhx9	T	A	1: 153,344,657 (GRCm39)	H510L	probably damaging	Het
Esyt3	C	T	9: 99,209,966 (GRCm39)	V305I	probably benign	Het
Fbxo40	A	T	16: 36,790,985 (GRCm39)	C42S	probably damaging	Het
Fbxw26	T	C	9: 109,561,715 (GRCm39)	M160V	probably damaging	Het
Frem2	A	G	3: 53,560,562 (GRCm39)	V1315A	probably benign	Het
Gbp9	T	A	5: 105,231,464 (GRCm39)	N374I	possibly damaging	Het
Gm11992	T	G	11: 9,011,305 (GRCm39)	S249A	probably damaging	Het
Gm14418	T	A	2: 177,079,086 (GRCm39)	Q303L	probably damaging	Het
Hectd4	C	A	5: 121,397,957 (GRCm39)	P295Q	probably damaging	Het
Kdm2b	T	C	5: 123,018,579 (GRCm39)	N954D	probably benign	Het
Klf15	C	T	6: 90,443,778 (GRCm39)	H118Y	probably damaging	Het
Lrit2	G	T	14: 36,791,034 (GRCm39)	A238S	probably damaging	Het
Man2c1	A	C	9: 57,042,783 (GRCm39)	M218L	probably benign	Het
Map3k1	T	A	13: 111,892,138 (GRCm39)	H1039L	probably damaging	Het
Map3k9	A	G	12: 81,769,136 (GRCm39)	S971P	probably benign	Het
Map4k3	C	T	17: 80,971,446 (GRCm39)	V74I	probably damaging	Het
Mars1	A	T	10: 127,136,368 (GRCm39)	S486T	possibly damaging	Het
Mettl13	A	T	1: 162,371,887 (GRCm39)	S327R	possibly damaging	Het
Mkks	G	A	2: 136,722,923 (GRCm39)	T78M	possibly damaging	Het
Mst1	C	T	9: 107,958,698 (GRCm39)		probably benign	Het
Myh1	G	T	11: 67,112,465 (GRCm39)	A1811S	probably damaging	Het
Myh13	A	G	11: 67,241,113 (GRCm39)	H830R	possibly damaging	Het
Nek4	A	G	14: 30,692,505 (GRCm39)	D443G	possibly damaging	Het
Nf1	T	C	11: 79,438,518 (GRCm39)	L137P	probably damaging	Het
Nipsnap3b	T	C	4: 53,012,049 (GRCm39)		probably null	Het
Nos1ap	G	T	1: 170,155,194 (GRCm39)	P220T	unknown	Het
Nrxn3	T	A	12: 90,298,583 (GRCm39)	I368N	probably benign	Het
Nup133	T	A	8: 124,649,156 (GRCm39)	Q562L	probably benign	Het
Nup214	T	A	2: 31,880,266 (GRCm39)	L342Q	probably damaging	Het
Nxn	A	G	11: 76,163,232 (GRCm39)	S264P	probably damaging	Het
Or11g24	G	T	14: 50,662,137 (GRCm39)	D54Y	probably damaging	Het
Otud4	T	C	8: 80,395,927 (GRCm39)	S567P	probably benign	Het
Patl2	A	C	2: 121,955,754 (GRCm39)	S261A	probably damaging	Het
Pcdh15	C	T	10: 74,126,865 (GRCm39)	P315S	probably damaging	Het
Pcm1	T	A	8: 41,736,616 (GRCm39)	H827Q	probably damaging	Het
Pirb	G	A	7: 3,719,045 (GRCm39)	L615F	probably damaging	Het
Ppp1r12c	T	A	7: 4,492,768 (GRCm39)	H236L	probably damaging	Het
Prkd1	C	T	12: 50,439,675 (GRCm39)	G384E	probably benign	Het
Rmnd1	C	A	10: 4,377,278 (GRCm39)	E134*	probably null	Het
Rusc2	T	A	4: 43,424,206 (GRCm39)	H1090Q	possibly damaging	Het
Sema5b	A	C	16: 35,471,691 (GRCm39)	Y428S	possibly damaging	Het
Slc2a8	T	A	2: 32,866,010 (GRCm39)	I301L	probably benign	Het
Slc38a11	C	T	2: 65,160,635 (GRCm39)	V320M	probably damaging	Het
Slc4a5	G	T	6: 83,266,308 (GRCm39)		probably null	Het
Slc7a6	T	C	8: 106,920,165 (GRCm39)	I320T	probably damaging	Het
Slc8a3	A	G	12: 81,246,542 (GRCm39)	I837T	probably benign	Het
Spag1	C	T	15: 36,197,895 (GRCm39)	R286*	probably null	Het
Tlr3	A	T	8: 45,851,896 (GRCm39)	F334I	possibly damaging	Het
Unc13b	A	G	4: 43,217,290 (GRCm39)	I530V	probably benign	Het
Vmn2r68	T	C	7: 84,886,722 (GRCm39)	D64G	possibly damaging	Het
Zfp157	T	A	5: 138,454,518 (GRCm39)	Y239N	probably damaging	Het

Other mutations in Dennd4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00476:Dennd4a	APN	9	64,819,044 (GRCm39)	missense	probably damaging	1.00
IGL01610:Dennd4a	APN	9	64,814,166 (GRCm39)	missense	probably damaging	0.99
IGL01788:Dennd4a	APN	9	64,749,903 (GRCm39)	missense	probably benign	0.00
IGL01827:Dennd4a	APN	9	64,749,843 (GRCm39)	nonsense	probably null
IGL01828:Dennd4a	APN	9	64,749,843 (GRCm39)	nonsense	probably null
IGL01829:Dennd4a	APN	9	64,749,843 (GRCm39)	nonsense	probably null
IGL01979:Dennd4a	APN	9	64,801,691 (GRCm39)	missense	probably benign	0.00
IGL02100:Dennd4a	APN	9	64,816,988 (GRCm39)	splice site	probably benign
IGL02339:Dennd4a	APN	9	64,749,843 (GRCm39)	nonsense	probably null
IGL02341:Dennd4a	APN	9	64,749,843 (GRCm39)	nonsense	probably null
IGL02584:Dennd4a	APN	9	64,758,580 (GRCm39)	missense	probably damaging	1.00
IGL02607:Dennd4a	APN	9	64,769,609 (GRCm39)	missense	probably damaging	0.99
IGL02654:Dennd4a	APN	9	64,817,473 (GRCm39)	splice site	probably benign
IGL02701:Dennd4a	APN	9	64,804,635 (GRCm39)	missense	possibly damaging	0.50
IGL03051:Dennd4a	APN	9	64,769,696 (GRCm39)	missense	probably damaging	1.00
IGL03257:Dennd4a	APN	9	64,779,156 (GRCm39)	missense	possibly damaging	0.93
IGL03346:Dennd4a	APN	9	64,795,808 (GRCm39)	missense	possibly damaging	0.47
IGL03349:Dennd4a	APN	9	64,796,256 (GRCm39)	missense	probably damaging	1.00
IGL03398:Dennd4a	APN	9	64,779,164 (GRCm39)	missense	probably benign	0.32
R0010:Dennd4a	UTSW	9	64,803,997 (GRCm39)	missense	probably benign	0.00
R0010:Dennd4a	UTSW	9	64,803,997 (GRCm39)	missense	probably benign	0.00
R0129:Dennd4a	UTSW	9	64,800,576 (GRCm39)	missense	probably damaging	1.00
R0220:Dennd4a	UTSW	9	64,759,727 (GRCm39)	missense	probably damaging	1.00
R0396:Dennd4a	UTSW	9	64,769,673 (GRCm39)	missense	probably damaging	1.00
R0881:Dennd4a	UTSW	9	64,758,665 (GRCm39)	critical splice donor site	probably null
R1225:Dennd4a	UTSW	9	64,818,957 (GRCm39)	missense	probably benign	0.03
R1311:Dennd4a	UTSW	9	64,817,286 (GRCm39)	missense	probably benign	0.34
R1448:Dennd4a	UTSW	9	64,813,327 (GRCm39)	missense	possibly damaging	0.95
R1450:Dennd4a	UTSW	9	64,818,947 (GRCm39)	missense	probably benign	0.03
R1630:Dennd4a	UTSW	9	64,779,164 (GRCm39)	missense	probably benign	0.32
R1709:Dennd4a	UTSW	9	64,796,887 (GRCm39)	missense	possibly damaging	0.92
R1824:Dennd4a	UTSW	9	64,766,640 (GRCm39)	critical splice donor site	probably null
R1851:Dennd4a	UTSW	9	64,769,312 (GRCm39)	missense	probably damaging	1.00
R1870:Dennd4a	UTSW	9	64,804,516 (GRCm39)	missense	probably benign	0.00
R1900:Dennd4a	UTSW	9	64,804,618 (GRCm39)	missense	probably damaging	0.99
R1911:Dennd4a	UTSW	9	64,796,368 (GRCm39)	missense	probably damaging	1.00
R1938:Dennd4a	UTSW	9	64,749,772 (GRCm39)	missense	probably damaging	1.00
R1954:Dennd4a	UTSW	9	64,759,749 (GRCm39)	missense	probably benign	0.02
R1955:Dennd4a	UTSW	9	64,759,749 (GRCm39)	missense	probably benign	0.02
R2049:Dennd4a	UTSW	9	64,796,887 (GRCm39)	missense	possibly damaging	0.92
R2129:Dennd4a	UTSW	9	64,813,256 (GRCm39)	splice site	probably null
R2138:Dennd4a	UTSW	9	64,796,619 (GRCm39)	missense	probably damaging	1.00
R2929:Dennd4a	UTSW	9	64,759,699 (GRCm39)	missense	possibly damaging	0.85
R3083:Dennd4a	UTSW	9	64,813,363 (GRCm39)	missense	probably benign	0.03
R3108:Dennd4a	UTSW	9	64,819,669 (GRCm39)	missense	probably benign	0.23
R3176:Dennd4a	UTSW	9	64,796,275 (GRCm39)	missense	probably damaging	1.00
R3177:Dennd4a	UTSW	9	64,796,275 (GRCm39)	missense	probably damaging	1.00
R3276:Dennd4a	UTSW	9	64,796,275 (GRCm39)	missense	probably damaging	1.00
R3277:Dennd4a	UTSW	9	64,796,275 (GRCm39)	missense	probably damaging	1.00
R3890:Dennd4a	UTSW	9	64,779,310 (GRCm39)	missense	probably damaging	1.00
R3953:Dennd4a	UTSW	9	64,759,857 (GRCm39)	missense	probably damaging	1.00
R3963:Dennd4a	UTSW	9	64,769,613 (GRCm39)	missense	probably damaging	1.00
R4059:Dennd4a	UTSW	9	64,819,174 (GRCm39)	missense	possibly damaging	0.92
R4499:Dennd4a	UTSW	9	64,817,405 (GRCm39)	missense	possibly damaging	0.78
R4500:Dennd4a	UTSW	9	64,817,405 (GRCm39)	missense	possibly damaging	0.78
R4501:Dennd4a	UTSW	9	64,817,405 (GRCm39)	missense	possibly damaging	0.78
R4671:Dennd4a	UTSW	9	64,801,689 (GRCm39)	missense	probably benign
R4701:Dennd4a	UTSW	9	64,804,639 (GRCm39)	missense	possibly damaging	0.91
R4821:Dennd4a	UTSW	9	64,804,531 (GRCm39)	missense	possibly damaging	0.92
R4829:Dennd4a	UTSW	9	64,796,338 (GRCm39)	missense	probably damaging	1.00
R4876:Dennd4a	UTSW	9	64,803,872 (GRCm39)	missense	probably benign
R4881:Dennd4a	UTSW	9	64,746,126 (GRCm39)	missense	possibly damaging	0.77
R4962:Dennd4a	UTSW	9	64,813,285 (GRCm39)	missense	probably benign	0.00
R5225:Dennd4a	UTSW	9	64,796,210 (GRCm39)	missense	possibly damaging	0.94
R5557:Dennd4a	UTSW	9	64,811,509 (GRCm39)	missense	probably benign	0.07
R5649:Dennd4a	UTSW	9	64,758,491 (GRCm39)	splice site	probably null
R5868:Dennd4a	UTSW	9	64,804,011 (GRCm39)	missense	probably benign	0.02
R5876:Dennd4a	UTSW	9	64,819,037 (GRCm39)	missense	probably damaging	1.00
R6052:Dennd4a	UTSW	9	64,794,227 (GRCm39)	missense	probably damaging	1.00
R6411:Dennd4a	UTSW	9	64,779,181 (GRCm39)	missense	probably benign	0.04
R6596:Dennd4a	UTSW	9	64,759,702 (GRCm39)	missense	probably damaging	1.00
R6668:Dennd4a	UTSW	9	64,794,247 (GRCm39)	missense	probably damaging	1.00
R6915:Dennd4a	UTSW	9	64,759,771 (GRCm39)	nonsense	probably null
R7056:Dennd4a	UTSW	9	64,814,205 (GRCm39)	missense	possibly damaging	0.89
R7107:Dennd4a	UTSW	9	64,801,681 (GRCm39)	missense	possibly damaging	0.79
R7203:Dennd4a	UTSW	9	64,803,756 (GRCm39)	missense	probably benign	0.05
R7238:Dennd4a	UTSW	9	64,769,238 (GRCm39)	missense	probably damaging	1.00
R7373:Dennd4a	UTSW	9	64,804,551 (GRCm39)	missense	probably benign	0.01
R7454:Dennd4a	UTSW	9	64,759,852 (GRCm39)	missense	probably damaging	1.00
R7546:Dennd4a	UTSW	9	64,780,326 (GRCm39)	missense	probably damaging	1.00
R7590:Dennd4a	UTSW	9	64,795,869 (GRCm39)	missense	probably benign	0.01
R7662:Dennd4a	UTSW	9	64,759,713 (GRCm39)	missense	probably damaging	1.00
R7782:Dennd4a	UTSW	9	64,814,202 (GRCm39)	missense	probably damaging	0.98
R7909:Dennd4a	UTSW	9	64,780,275 (GRCm39)	critical splice acceptor site	probably null
R7976:Dennd4a	UTSW	9	64,759,794 (GRCm39)	missense	possibly damaging	0.95
R8026:Dennd4a	UTSW	9	64,780,312 (GRCm39)	missense	probably damaging	1.00
R8034:Dennd4a	UTSW	9	64,795,850 (GRCm39)	missense	probably benign	0.01
R8089:Dennd4a	UTSW	9	64,756,457 (GRCm39)	missense	probably damaging	1.00
R8298:Dennd4a	UTSW	9	64,814,157 (GRCm39)	missense	probably benign	0.00
R8425:Dennd4a	UTSW	9	64,746,256 (GRCm39)	missense	probably damaging	1.00
R8495:Dennd4a	UTSW	9	64,794,161 (GRCm39)	missense	probably damaging	1.00
R8855:Dennd4a	UTSW	9	64,819,672 (GRCm39)	missense	probably benign
R9219:Dennd4a	UTSW	9	64,796,376 (GRCm39)	missense	probably damaging	0.96
R9275:Dennd4a	UTSW	9	64,749,906 (GRCm39)	missense	probably damaging	1.00
R9376:Dennd4a	UTSW	9	64,819,974 (GRCm39)	missense	probably benign	0.00
R9485:Dennd4a	UTSW	9	64,814,388 (GRCm39)	nonsense	probably null
R9672:Dennd4a	UTSW	9	64,800,640 (GRCm39)	missense	probably benign
R9746:Dennd4a	UTSW	9	64,801,793 (GRCm39)	missense	probably benign
X0026:Dennd4a	UTSW	9	64,804,602 (GRCm39)	missense	possibly damaging	0.67
Z1088:Dennd4a	UTSW	9	64,779,304 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAAGTCAGCCCATAAGATCG -3'
(R):5'- TGATTGCATTGGGGTCAATACC -3'

Sequencing Primer
(F):5'- ATCGCAAAGAGGTATTCTTCTATCCC -3'
(R):5'- GCTTTCTGCATTTCAAAAAGCACTCG -3'

Posted On

2020-09-02