Mutagenetix > Incidental Mutation

Incidental Mutation 'R8399:Trmt10b'

647755

Institutional Source

Beutler Lab

Gene Symbol

Trmt10b

Ensembl Gene

ENSMUSG00000035601

Gene Name

tRNA methyltransferase 10B

Synonyms

2610042J10Rik, Rg9mtd3

MMRRC Submission

067762-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.276) question?

Stock #

R8399 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

45297127-45316131 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 45305870 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 184 (M184L)

Ref Sequence

ENSEMBL: ENSMUSP00000041052 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044673] [ENSMUST00000107800] [ENSMUST00000144781]

AlphaFold

Q9D075

Predicted Effect

possibly damaging
Transcript: ENSMUST00000044673
AA Change: M184L

PolyPhen 2 Score 0.705 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000041052
Gene: ENSMUSG00000035601
AA Change: M184L

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	110	122	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	135	308	2.6e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107800
AA Change: M182L

PolyPhen 2 Score 0.315 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000103429
Gene: ENSMUSG00000035601
AA Change: M182L

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	108	120	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	133	306	1.6e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000144781

SMART Domains

Protein: ENSMUSP00000114832
Gene: ENSMUSG00000035601

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	110	122	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	A	T	13: 81,637,289 (GRCm39)	V3384D	possibly damaging	Het
Apba3	C	A	10: 81,104,832 (GRCm39)	T35N	probably benign	Het
Bcl6	T	C	16: 23,791,698 (GRCm39)	M219V	probably benign	Het
Bco2	T	A	9: 50,452,418 (GRCm39)	T217S	probably benign	Het
C1s1	C	T	6: 124,512,252 (GRCm39)	V277I	probably benign	Het
Ccdc162	T	A	10: 41,415,517 (GRCm39)	R2149W	probably damaging	Het
Cers6	T	C	2: 68,692,115 (GRCm39)	F46L	probably benign	Het
Chpf	T	C	1: 75,452,864 (GRCm39)	I359V	probably benign	Het
Chrnb4	A	C	9: 54,951,107 (GRCm39)	L52R	probably benign	Het
Cox6a1	T	C	5: 115,483,958 (GRCm39)	T95A	probably damaging	Het
Def8	T	A	8: 124,182,238 (GRCm39)	Y197*	probably null	Het
Dmbt1	C	G	7: 130,684,317 (GRCm39)	D778E	unknown	Het
Dnaaf3	C	T	7: 4,526,936 (GRCm39)		probably null	Het
Dnm1l	T	A	16: 16,139,536 (GRCm39)	H484L	probably damaging	Het
Eml1	G	A	12: 108,504,390 (GRCm39)	S783N	possibly damaging	Het
Frmd4a	T	C	2: 4,577,244 (GRCm39)	S367P	probably damaging	Het
Hck	A	C	2: 152,980,237 (GRCm39)	K355N	probably damaging	Het
Hexim2	G	T	11: 103,029,329 (GRCm39)	R127L	probably damaging	Het
Hivep2	T	C	10: 14,008,178 (GRCm39)	L1592P	possibly damaging	Het
Htr1d	G	A	4: 136,170,686 (GRCm39)	G305E	probably damaging	Het
Ifi207	G	A	1: 173,557,844 (GRCm39)	S298L	unknown	Het
Ighv1-11	A	G	12: 114,576,047 (GRCm39)	V56A	possibly damaging	Het
Ighv7-1	G	A	12: 113,860,532 (GRCm39)	T12I	unknown	Het
Kctd14	T	C	7: 97,106,811 (GRCm39)	L22P	probably damaging	Het
Klra17	T	C	6: 129,851,900 (GRCm39)		probably benign	Het
Kndc1	C	T	7: 139,493,434 (GRCm39)	R467W	probably damaging	Het
Maf	T	A	8: 116,433,251 (GRCm39)	I118F	unknown	Het
Mppe1	T	C	18: 67,358,946 (GRCm39)	T341A	probably benign	Het
Mtmr2	T	A	9: 13,703,363 (GRCm39)	V186E	probably benign	Het
Nedd9	G	T	13: 41,471,950 (GRCm39)	Y176*	probably null	Het
Omd	A	G	13: 49,743,345 (GRCm39)	I132V	possibly damaging	Het
Or12e10	A	C	2: 87,640,568 (GRCm39)	M135L	probably damaging	Het
Or4a39	T	C	2: 89,237,028 (GRCm39)	T132A	probably benign	Het
Pcnx4	T	A	12: 72,620,985 (GRCm39)	M935K	probably benign	Het
Pecr	G	A	1: 72,306,624 (GRCm39)	T219I	probably benign	Het
Pkd1l3	C	T	8: 110,350,520 (GRCm39)	P455L	possibly damaging	Het
Plcg2	T	C	8: 118,323,101 (GRCm39)	Y719H	probably damaging	Het
Plk4	C	T	3: 40,763,265 (GRCm39)	R479*	probably null	Het
Pms1	T	A	1: 53,307,091 (GRCm39)		probably null	Het
Raph1	C	T	1: 60,528,477 (GRCm39)	S928N	unknown	Het
Rtp4	G	T	16: 23,339,164 (GRCm39)		probably benign	Het
Skor1	C	T	9: 63,052,440 (GRCm39)	V510I	possibly damaging	Het
Smg1	T	C	7: 117,789,794 (GRCm39)	T699A	unknown	Het
Tcp11l1	T	C	2: 104,515,720 (GRCm39)	D381G	probably benign	Het
Tnik	T	A	3: 28,548,159 (GRCm39)	M56K	unknown	Het
Trappc9	G	A	15: 72,924,131 (GRCm39)	R204C	probably damaging	Het
Vmn1r224	T	A	17: 20,640,011 (GRCm39)	I196N	probably damaging	Het
Vmn1r49	A	T	6: 90,049,689 (GRCm39)	C104*	probably null	Het
Vmn2r35	A	C	7: 7,819,897 (GRCm39)	S124R	probably benign	Het
Wdr62	T	C	7: 29,957,486 (GRCm39)	E547G	probably damaging	Het
Zfp68	A	T	5: 138,606,082 (GRCm39)	D80E	probably benign	Het

Other mutations in Trmt10b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01064:Trmt10b	APN	4	45,314,347 (GRCm39)	missense	possibly damaging	0.91
IGL01743:Trmt10b	APN	4	45,305,879 (GRCm39)	missense	probably damaging	1.00
IGL02012:Trmt10b	APN	4	45,315,045 (GRCm39)	missense	probably benign	0.00
IGL02174:Trmt10b	APN	4	45,308,508 (GRCm39)	missense	possibly damaging	0.88
R0454:Trmt10b	UTSW	4	45,304,286 (GRCm39)	missense	probably damaging	1.00
R0506:Trmt10b	UTSW	4	45,304,306 (GRCm39)	missense	probably damaging	0.98
R1757:Trmt10b	UTSW	4	45,307,946 (GRCm39)	missense	probably damaging	1.00
R1962:Trmt10b	UTSW	4	45,314,378 (GRCm39)	nonsense	probably null
R2944:Trmt10b	UTSW	4	45,300,445 (GRCm39)	start codon destroyed	probably null	0.99
R4781:Trmt10b	UTSW	4	45,305,817 (GRCm39)	missense	probably damaging	0.98
R5802:Trmt10b	UTSW	4	45,314,236 (GRCm39)	unclassified	probably benign
R6400:Trmt10b	UTSW	4	45,308,562 (GRCm39)	missense	probably damaging	1.00
R6460:Trmt10b	UTSW	4	45,314,322 (GRCm39)	missense	possibly damaging	0.81
R7165:Trmt10b	UTSW	4	45,308,549 (GRCm39)	missense	probably damaging	1.00
R7182:Trmt10b	UTSW	4	45,308,520 (GRCm39)	missense	probably benign	0.36
R8805:Trmt10b	UTSW	4	45,301,281 (GRCm39)	missense	probably benign	0.31
R9778:Trmt10b	UTSW	4	45,314,374 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCATGCGTCCATGCCAAAG -3'
(R):5'- GGACTCAACTCTTTAGTTCATCAAA -3'

Sequencing Primer
(F):5'- GCCAAAGGCTCAGTTGTCCTTG -3'
(R):5'- GTGTTCATATCATGGGCACACAC -3'

Posted On

2020-09-02