Mutagenetix > Incidental Mutation

Incidental Mutation 'R8399:Omd'

647786

Institutional Source

Beutler Lab

Gene Symbol

Omd

Ensembl Gene

ENSMUSG00000048368

Gene Name

osteomodulin

Synonyms

osteoadherin, SLRR2C, OSAD

MMRRC Submission

067762-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.079) question?

Stock #

R8399 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

49735938-49746088 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 49743345 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 132 (I132V)

Ref Sequence

ENSEMBL: ENSMUSP00000065706 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021818] [ENSMUST00000065494] [ENSMUST00000221170]

AlphaFold

O35103

Predicted Effect

probably benign
Transcript: ENSMUST00000021818

SMART Domains

Protein: ENSMUSP00000021818
Gene: ENSMUSG00000021391

Domain	Start	End	E-Value	Type
coiled coil region	1	34	N/A	INTRINSIC
Pfam:CENP-P	102	278	3.9e-89	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000065494
AA Change: I132V

PolyPhen 2 Score 0.502 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000065706
Gene: ENSMUSG00000048368
AA Change: I132V

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
LRRNT	61	95	3.14e-11	SMART
LRR	115	139	2.15e2	SMART
LRR	140	160	2.2e1	SMART
LRR	162	184	4.21e1	SMART
LRR	185	210	1.01e2	SMART
LRR	211	234	6.96e0	SMART
LRR	235	255	8.49e1	SMART
LRR	256	279	1.76e-1	SMART
LRR	300	322	7.8e1	SMART
Blast:LRR	330	353	6e-8	BLAST
low complexity region	385	391	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000221170
AA Change: I132V

PolyPhen 2 Score 0.502 (Sensitivity: 0.88; Specificity: 0.90)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous mutation of this gene results in impaired cued contextual conditioning behavior. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	A	T	13: 81,637,289 (GRCm39)	V3384D	possibly damaging	Het
Apba3	C	A	10: 81,104,832 (GRCm39)	T35N	probably benign	Het
Bcl6	T	C	16: 23,791,698 (GRCm39)	M219V	probably benign	Het
Bco2	T	A	9: 50,452,418 (GRCm39)	T217S	probably benign	Het
C1s1	C	T	6: 124,512,252 (GRCm39)	V277I	probably benign	Het
Ccdc162	T	A	10: 41,415,517 (GRCm39)	R2149W	probably damaging	Het
Cers6	T	C	2: 68,692,115 (GRCm39)	F46L	probably benign	Het
Chpf	T	C	1: 75,452,864 (GRCm39)	I359V	probably benign	Het
Chrnb4	A	C	9: 54,951,107 (GRCm39)	L52R	probably benign	Het
Cox6a1	T	C	5: 115,483,958 (GRCm39)	T95A	probably damaging	Het
Def8	T	A	8: 124,182,238 (GRCm39)	Y197*	probably null	Het
Dmbt1	C	G	7: 130,684,317 (GRCm39)	D778E	unknown	Het
Dnaaf3	C	T	7: 4,526,936 (GRCm39)		probably null	Het
Dnm1l	T	A	16: 16,139,536 (GRCm39)	H484L	probably damaging	Het
Eml1	G	A	12: 108,504,390 (GRCm39)	S783N	possibly damaging	Het
Frmd4a	T	C	2: 4,577,244 (GRCm39)	S367P	probably damaging	Het
Hck	A	C	2: 152,980,237 (GRCm39)	K355N	probably damaging	Het
Hexim2	G	T	11: 103,029,329 (GRCm39)	R127L	probably damaging	Het
Hivep2	T	C	10: 14,008,178 (GRCm39)	L1592P	possibly damaging	Het
Htr1d	G	A	4: 136,170,686 (GRCm39)	G305E	probably damaging	Het
Ifi207	G	A	1: 173,557,844 (GRCm39)	S298L	unknown	Het
Ighv1-11	A	G	12: 114,576,047 (GRCm39)	V56A	possibly damaging	Het
Ighv7-1	G	A	12: 113,860,532 (GRCm39)	T12I	unknown	Het
Kctd14	T	C	7: 97,106,811 (GRCm39)	L22P	probably damaging	Het
Klra17	T	C	6: 129,851,900 (GRCm39)		probably benign	Het
Kndc1	C	T	7: 139,493,434 (GRCm39)	R467W	probably damaging	Het
Maf	T	A	8: 116,433,251 (GRCm39)	I118F	unknown	Het
Mppe1	T	C	18: 67,358,946 (GRCm39)	T341A	probably benign	Het
Mtmr2	T	A	9: 13,703,363 (GRCm39)	V186E	probably benign	Het
Nedd9	G	T	13: 41,471,950 (GRCm39)	Y176*	probably null	Het
Or12e10	A	C	2: 87,640,568 (GRCm39)	M135L	probably damaging	Het
Or4a39	T	C	2: 89,237,028 (GRCm39)	T132A	probably benign	Het
Pcnx4	T	A	12: 72,620,985 (GRCm39)	M935K	probably benign	Het
Pecr	G	A	1: 72,306,624 (GRCm39)	T219I	probably benign	Het
Pkd1l3	C	T	8: 110,350,520 (GRCm39)	P455L	possibly damaging	Het
Plcg2	T	C	8: 118,323,101 (GRCm39)	Y719H	probably damaging	Het
Plk4	C	T	3: 40,763,265 (GRCm39)	R479*	probably null	Het
Pms1	T	A	1: 53,307,091 (GRCm39)		probably null	Het
Raph1	C	T	1: 60,528,477 (GRCm39)	S928N	unknown	Het
Rtp4	G	T	16: 23,339,164 (GRCm39)		probably benign	Het
Skor1	C	T	9: 63,052,440 (GRCm39)	V510I	possibly damaging	Het
Smg1	T	C	7: 117,789,794 (GRCm39)	T699A	unknown	Het
Tcp11l1	T	C	2: 104,515,720 (GRCm39)	D381G	probably benign	Het
Tnik	T	A	3: 28,548,159 (GRCm39)	M56K	unknown	Het
Trappc9	G	A	15: 72,924,131 (GRCm39)	R204C	probably damaging	Het
Trmt10b	A	T	4: 45,305,870 (GRCm39)	M184L	possibly damaging	Het
Vmn1r224	T	A	17: 20,640,011 (GRCm39)	I196N	probably damaging	Het
Vmn1r49	A	T	6: 90,049,689 (GRCm39)	C104*	probably null	Het
Vmn2r35	A	C	7: 7,819,897 (GRCm39)	S124R	probably benign	Het
Wdr62	T	C	7: 29,957,486 (GRCm39)	E547G	probably damaging	Het
Zfp68	A	T	5: 138,606,082 (GRCm39)	D80E	probably benign	Het

Other mutations in Omd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01976:Omd	APN	13	49,743,119 (GRCm39)	nonsense	probably null
IGL01982:Omd	APN	13	49,742,973 (GRCm39)	missense	possibly damaging	0.88
IGL02678:Omd	APN	13	49,745,757 (GRCm39)	missense	probably benign	0.37
IGL03069:Omd	APN	13	49,745,870 (GRCm39)	utr 3 prime	probably benign
R1036:Omd	UTSW	13	49,743,447 (GRCm39)	missense	probably damaging	1.00
R3954:Omd	UTSW	13	49,743,213 (GRCm39)	missense	probably benign	0.00
R4030:Omd	UTSW	13	49,743,125 (GRCm39)	missense	probably benign	0.08
R4335:Omd	UTSW	13	49,743,712 (GRCm39)	missense	probably benign	0.02
R5095:Omd	UTSW	13	49,743,174 (GRCm39)	missense	possibly damaging	0.95
R5137:Omd	UTSW	13	49,743,552 (GRCm39)	missense	probably benign	0.05
R5400:Omd	UTSW	13	49,745,703 (GRCm39)	missense	probably benign	0.37
R5596:Omd	UTSW	13	49,745,814 (GRCm39)	missense	probably benign	0.16
R5930:Omd	UTSW	13	49,743,112 (GRCm39)	missense	possibly damaging	0.63
R6132:Omd	UTSW	13	49,743,843 (GRCm39)	missense	probably damaging	0.97
R6294:Omd	UTSW	13	49,743,467 (GRCm39)	missense	probably damaging	1.00
R6454:Omd	UTSW	13	49,743,345 (GRCm39)	missense	probably damaging	0.99
R6680:Omd	UTSW	13	49,743,004 (GRCm39)	missense	possibly damaging	0.74
R6704:Omd	UTSW	13	49,743,349 (GRCm39)	missense	probably damaging	1.00
R6932:Omd	UTSW	13	49,743,710 (GRCm39)	missense	probably damaging	1.00
R7427:Omd	UTSW	13	49,745,745 (GRCm39)	missense	possibly damaging	0.68
R7884:Omd	UTSW	13	49,743,630 (GRCm39)	missense	probably damaging	1.00
R7971:Omd	UTSW	13	49,743,730 (GRCm39)	missense	probably benign	0.00
R8129:Omd	UTSW	13	49,745,565 (GRCm39)	missense	probably damaging	0.99
R8914:Omd	UTSW	13	49,745,718 (GRCm39)	missense	probably damaging	1.00
R8959:Omd	UTSW	13	49,745,790 (GRCm39)	missense	possibly damaging	0.57
R8984:Omd	UTSW	13	49,743,576 (GRCm39)	missense	possibly damaging	0.92
R9415:Omd	UTSW	13	49,745,837 (GRCm39)	missense	probably benign
R9718:Omd	UTSW	13	49,743,336 (GRCm39)	missense	probably damaging	1.00
R9723:Omd	UTSW	13	49,743,838 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTAAGGAATGCTTCTGTCCAAC -3'
(R):5'- TATAGCAGAGGTCAAGCATAGTC -3'

Sequencing Primer
(F):5'- CTTTCCAACATCAATGTACTGTGAC -3'
(R):5'- GCAGAGGTCAAGCATAGTCACATTC -3'

Posted On

2020-09-02