Mutagenetix > Incidental Mutation

Incidental Mutation 'R8400:Stra6l'

647802

Institutional Source

Beutler Lab

Gene Symbol

Stra6l

Ensembl Gene

ENSMUSG00000028327

Gene Name

STRA6-like

Synonyms

Rbpr2, 1300002K09Rik

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8400 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

45848664-45887008 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 45864905 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glutamine at position 77 (R77Q)

Ref Sequence

ENSEMBL: ENSMUSP00000030011 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030011] [ENSMUST00000107782] [ENSMUST00000107783]

AlphaFold

Q9DBN1

Predicted Effect

probably damaging
Transcript: ENSMUST00000030011
AA Change: R77Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000030011
Gene: ENSMUSG00000028327
AA Change: R77Q

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	13	602	8.7e-228	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107782

SMART Domains

Protein: ENSMUSP00000103411
Gene: ENSMUSG00000028327

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	1	512	2.8e-221	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000107783
AA Change: R77Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000103412
Gene: ENSMUSG00000028327
AA Change: R77Q

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	12	603	1e-254	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	G	A	11: 9,293,925	M1929I	probably benign	Het
Abca13	T	C	11: 9,298,218	I2655T	probably damaging	Het
Acad10	A	G	5: 121,626,205	V887A	possibly damaging	Het
Acot10	T	C	15: 20,666,172	E161G	possibly damaging	Het
Astn1	C	T	1: 158,657,100	P919L	probably benign	Het
Atp1a4	T	A	1: 172,234,494	D688V	probably damaging	Het
C4bp	C	A	1: 130,636,747	C400F	probably damaging	Het
Col6a6	A	C	9: 105,774,796	D1005E	probably damaging	Het
Csnk1g3	C	T	18: 53,953,288	R422C	probably benign	Het
Cutc	T	C	19: 43,753,205	S15P	probably benign	Het
Dgkb	T	C	12: 38,602,838		probably null	Het
Disc1	T	C	8: 125,232,993	V748A	probably benign	Het
Dmbt1	C	G	7: 131,082,587	D778E	unknown	Het
Dmxl2	T	C	9: 54,383,753	Y2471C	probably benign	Het
Fam185a	T	A	5: 21,438,816	N243K	probably benign	Het
Fchsd2	A	T	7: 101,253,573	Q386L	possibly damaging	Het
Gm904	C	A	13: 50,643,417	P49Q	probably damaging	Het
H2-Q10	C	T	17: 35,470,477	R59C	probably damaging	Het
Ier5l	A	G	2: 30,473,093	Y307H	possibly damaging	Het
Kmt2e	C	A	5: 23,497,092	T906K	probably benign	Het
Kndc1	C	T	7: 139,913,518	R467W	probably damaging	Het
Muc5ac	C	A	7: 141,810,476	T2508K	probably damaging	Het
Nlrp9a	A	T	7: 26,565,006	M784L	probably benign	Het
Nlrp9b	T	A	7: 20,024,012	C391*	probably null	Het
Nubp2	A	C	17: 24,884,465	M146R	probably damaging	Het
Olfr1295	A	T	2: 111,565,402	L14H	probably damaging	Het
Olfr1359	G	A	13: 21,703,915	V305M	probably benign	Het
Olfr1419	T	A	19: 11,871,214	M1L	probably damaging	Het
Olfr43	C	T	11: 74,206,395	V274M	possibly damaging	Het
Olfr694	T	A	7: 106,689,669	S21C	probably benign	Het
Olfr857	A	T	9: 19,713,093	N89Y	probably benign	Het
Otud1	T	C	2: 19,658,378	V106A	possibly damaging	Het
Pcdhac1	T	A	18: 37,092,400	Y755*	probably null	Het
Pkd1l3	C	T	8: 109,623,888	P455L	possibly damaging	Het
Ptprb	GAGACCCTCGGGAGCACTGCAGAGACCCTCAGGAACACTGCAAAGACCCTCGGGAGCACTGCAGAGACCCTCAGGAACACTGCAAAGACCCTCGGGAGCACTGCAGAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACT	GAGACCCTCGGGAGCACTGCAGAGACCCTCAGGAACACTGCAAAGACCCTCGGGAGCACTGCAGAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACTGCAAAGACCCTCGGGAGCACT	10: 116,283,572		probably benign	Het
Samhd1	T	C	2: 157,099,433	E648G	probably benign	Het
Smarca5	T	C	8: 80,709,127	T794A	probably benign	Het
Spc24	A	T	9: 21,757,730	L87H	probably damaging	Het
Sppl2b	TGTCACAGGT	TGT	10: 80,866,069		probably null	Het
Tdrd1	G	A	19: 56,848,649	V472M	probably benign	Het
Tsc2	A	T	17: 24,604,987	I948K	possibly damaging	Het
Ttc39d	T	C	17: 80,216,005	V31A	probably benign	Het
Vmn1r158	A	T	7: 22,789,880	C301*	probably null	Het
Vmn2r22	A	T	6: 123,637,527	L368*	probably null	Het
Vmn2r79	A	G	7: 87,002,100	T236A	probably benign	Het
Vwa1	T	C	4: 155,772,768	H191R	probably benign	Het
Zdbf2	T	A	1: 63,304,976	V838E	possibly damaging	Het

Other mutations in Stra6l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01448:Stra6l	APN	4	45864864	splice site	probably null
IGL02343:Stra6l	APN	4	45869588	missense	probably damaging	0.99
IGL02710:Stra6l	APN	4	45882728	missense	possibly damaging	0.72
IGL02880:Stra6l	APN	4	45885278	missense	possibly damaging	0.70
IGL03034:Stra6l	APN	4	45885392	missense	probably benign	0.41
IGL03163:Stra6l	APN	4	45881455	missense	probably benign	0.03
IGL03355:Stra6l	APN	4	45873689	missense	probably benign	0.16
K2124:Stra6l	UTSW	4	45870770	splice site	probably benign
R0800:Stra6l	UTSW	4	45882797	missense	probably benign	0.29
R1171:Stra6l	UTSW	4	45864982	missense	probably benign
R1931:Stra6l	UTSW	4	45882698	nonsense	probably null
R1982:Stra6l	UTSW	4	45867237	nonsense	probably null
R2331:Stra6l	UTSW	4	45858224	critical splice donor site	probably null
R4691:Stra6l	UTSW	4	45882851	missense	probably benign	0.39
R4846:Stra6l	UTSW	4	45873682	missense	possibly damaging	0.76
R5175:Stra6l	UTSW	4	45870860	missense	probably benign	0.01
R5633:Stra6l	UTSW	4	45881455	missense	probably benign	0.00
R6212:Stra6l	UTSW	4	45884664	missense	probably benign
R6517:Stra6l	UTSW	4	45879473	missense	probably benign
R6534:Stra6l	UTSW	4	45860041	splice site	probably null
R6584:Stra6l	UTSW	4	45869635	splice site	probably null
R7763:Stra6l	UTSW	4	45869570	nonsense	probably null
R8511:Stra6l	UTSW	4	45885347	missense	probably benign	0.00
R9007:Stra6l	UTSW	4	45864910	missense	possibly damaging	0.81
R9313:Stra6l	UTSW	4	45881454	missense	probably benign
R9379:Stra6l	UTSW	4	45849093	missense	probably benign
R9400:Stra6l	UTSW	4	45885293	missense	probably damaging	1.00
R9764:Stra6l	UTSW	4	45884602	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AATCTGTGCTTAGCAGTGTGC -3'
(R):5'- TGACCTTGGGCAAGTAACAGG -3'

Sequencing Primer
(F):5'- CAGTGTGCTTAGACTGTGATTGCAG -3'
(R):5'- ATGTTGTTTTAGCCCTCCAGACAAC -3'

Posted On

2020-09-02