Incidental Mutation 'R7914:1700017N19Rik'
| ID |
647968 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
1700017N19Rik
|
| Ensembl Gene |
ENSMUSG00000056912 |
| Gene Name |
RIKEN cDNA 1700017N19 gene |
| Synonyms |
|
| MMRRC Submission |
045962-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.063)
|
| Stock # |
R7914 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
100426346-100454257 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 100428538 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Phenylalanine
at position 12
(V12F)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000139797
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000041162]
[ENSMUST00000054471]
[ENSMUST00000186825]
[ENSMUST00000187119]
[ENSMUST00000188736]
[ENSMUST00000188930]
[ENSMUST00000190386]
[ENSMUST00000190708]
[ENSMUST00000191336]
[ENSMUST00000218464]
[ENSMUST00000218821]
|
| AlphaFold |
A0A087WPJ1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000041162
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054471
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000186825
AA Change: V12F
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000187119
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188736
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188930
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190386
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190708
AA Change: V12F
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000191336
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218328
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218464
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218821
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
| Validation Efficiency |
100% (39/39) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adnp2 |
T |
A |
18: 80,174,056 (GRCm39) |
R118W |
probably damaging |
Het |
| Apaf1 |
G |
A |
10: 90,896,095 (GRCm39) |
R337C |
probably damaging |
Het |
| Arhgef40 |
T |
C |
14: 52,225,032 (GRCm39) |
L59P |
probably damaging |
Het |
| B020011L13Rik |
A |
G |
1: 117,729,162 (GRCm39) |
E223G |
probably benign |
Het |
| Bcl6 |
T |
C |
16: 23,788,761 (GRCm39) |
R536G |
possibly damaging |
Het |
| Bltp1 |
A |
T |
3: 37,000,432 (GRCm39) |
N1204Y |
probably benign |
Het |
| Catsperg1 |
T |
C |
7: 28,894,851 (GRCm39) |
E582G |
probably benign |
Het |
| Ccdc136 |
A |
G |
6: 29,419,306 (GRCm39) |
N942S |
probably damaging |
Het |
| Ccdc81 |
A |
C |
7: 89,524,988 (GRCm39) |
M531R |
possibly damaging |
Het |
| Cep78 |
T |
C |
19: 15,953,672 (GRCm39) |
E283G |
probably benign |
Het |
| Cnot1 |
ACG |
A |
8: 96,472,275 (GRCm39) |
|
probably null |
Het |
| E230025N22Rik |
C |
A |
18: 36,828,605 (GRCm39) |
R24S |
possibly damaging |
Het |
| Epb41l1 |
T |
A |
2: 156,364,128 (GRCm39) |
M879K |
probably benign |
Het |
| Fam135a |
T |
C |
1: 24,065,760 (GRCm39) |
Y1226C |
probably damaging |
Het |
| Fbxo11 |
T |
C |
17: 88,320,031 (GRCm39) |
E151G |
|
Het |
| Herc6 |
A |
G |
6: 57,584,106 (GRCm39) |
T322A |
probably benign |
Het |
| Inka1 |
T |
C |
9: 107,862,761 (GRCm39) |
|
probably benign |
Het |
| Kalrn |
T |
A |
16: 33,849,122 (GRCm39) |
Q2110L |
probably benign |
Het |
| Kti12 |
A |
C |
4: 108,705,443 (GRCm39) |
E119A |
probably benign |
Het |
| Kti12 |
G |
T |
4: 108,705,444 (GRCm39) |
E119D |
probably benign |
Het |
| Lrrc19 |
T |
A |
4: 94,526,537 (GRCm39) |
H340L |
probably damaging |
Het |
| Mkks |
A |
T |
2: 136,722,876 (GRCm39) |
F94I |
probably damaging |
Het |
| Pcdhga3 |
T |
A |
18: 37,808,013 (GRCm39) |
F155L |
probably benign |
Het |
| Pdlim1 |
T |
A |
19: 40,240,445 (GRCm39) |
I53F |
probably damaging |
Het |
| Pttg1 |
A |
T |
11: 43,316,421 (GRCm39) |
L26Q |
probably benign |
Het |
| Rasa4 |
T |
A |
5: 136,130,510 (GRCm39) |
|
probably benign |
Het |
| Rsbn1l |
A |
G |
5: 21,110,896 (GRCm39) |
S481P |
probably damaging |
Het |
| Sae1 |
C |
A |
7: 16,121,648 (GRCm39) |
G10C |
unknown |
Het |
| Samd15 |
T |
C |
12: 87,248,559 (GRCm39) |
S415P |
probably damaging |
Het |
| Scn7a |
T |
A |
2: 66,530,294 (GRCm39) |
I684F |
probably damaging |
Het |
| Sec23b |
T |
A |
2: 144,406,565 (GRCm39) |
M120K |
probably benign |
Het |
| Slc20a1 |
G |
A |
2: 129,049,757 (GRCm39) |
D340N |
probably benign |
Het |
| Slf2 |
T |
A |
19: 44,947,499 (GRCm39) |
M821K |
possibly damaging |
Het |
| Suv39h2 |
G |
A |
2: 3,465,453 (GRCm39) |
R301* |
probably null |
Het |
| Tgfbi |
A |
G |
13: 56,777,502 (GRCm39) |
T329A |
probably damaging |
Het |
| Tmprss12 |
T |
C |
15: 100,183,111 (GRCm39) |
F151S |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,747,525 (GRCm39) |
D4508G |
probably benign |
Het |
| Tyk2 |
C |
A |
9: 21,032,851 (GRCm39) |
C304F |
probably benign |
Het |
| Vmn1r121 |
T |
A |
7: 20,831,589 (GRCm39) |
T284S |
probably benign |
Het |
| Vmn2r117 |
A |
G |
17: 23,679,100 (GRCm39) |
I708T |
possibly damaging |
Het |
| Vmn2r2 |
A |
T |
3: 64,041,526 (GRCm39) |
D396E |
probably benign |
Het |
| Zfc3h1 |
A |
G |
10: 115,239,062 (GRCm39) |
|
probably null |
Het |
| Zic4 |
T |
G |
9: 91,266,181 (GRCm39) |
V275G |
probably damaging |
Het |
|
| Other mutations in 1700017N19Rik |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01565:1700017N19Rik
|
APN |
10 |
100,439,222 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02159:1700017N19Rik
|
APN |
10 |
100,446,527 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02556:1700017N19Rik
|
APN |
10 |
100,446,579 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02629:1700017N19Rik
|
APN |
10 |
100,445,006 (GRCm39) |
splice site |
probably benign |
|
|
IGL02692:1700017N19Rik
|
APN |
10 |
100,439,410 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL02962:1700017N19Rik
|
APN |
10 |
100,446,455 (GRCm39) |
splice site |
probably null |
|
|
R0145:1700017N19Rik
|
UTSW |
10 |
100,437,783 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0402:1700017N19Rik
|
UTSW |
10 |
100,445,115 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1514:1700017N19Rik
|
UTSW |
10 |
100,448,729 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1519:1700017N19Rik
|
UTSW |
10 |
100,439,390 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1680:1700017N19Rik
|
UTSW |
10 |
100,439,390 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1686:1700017N19Rik
|
UTSW |
10 |
100,448,722 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R3951:1700017N19Rik
|
UTSW |
10 |
100,451,158 (GRCm39) |
splice site |
probably benign |
|
|
R3952:1700017N19Rik
|
UTSW |
10 |
100,451,158 (GRCm39) |
splice site |
probably benign |
|
|
R4423:1700017N19Rik
|
UTSW |
10 |
100,441,495 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4905:1700017N19Rik
|
UTSW |
10 |
100,448,680 (GRCm39) |
splice site |
probably null |
|
|
R5507:1700017N19Rik
|
UTSW |
10 |
100,445,095 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5898:1700017N19Rik
|
UTSW |
10 |
100,451,070 (GRCm39) |
missense |
probably benign |
0.20 |
|
R5898:1700017N19Rik
|
UTSW |
10 |
100,448,762 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R5977:1700017N19Rik
|
UTSW |
10 |
100,451,106 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7034:1700017N19Rik
|
UTSW |
10 |
100,445,118 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7036:1700017N19Rik
|
UTSW |
10 |
100,445,118 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7394:1700017N19Rik
|
UTSW |
10 |
100,445,038 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7412:1700017N19Rik
|
UTSW |
10 |
100,448,691 (GRCm39) |
nonsense |
probably null |
|
|
R7870:1700017N19Rik
|
UTSW |
10 |
100,441,505 (GRCm39) |
missense |
probably benign |
|
|
R8466:1700017N19Rik
|
UTSW |
10 |
100,437,873 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8558:1700017N19Rik
|
UTSW |
10 |
100,430,497 (GRCm39) |
missense |
probably benign |
0.23 |
|
R9004:1700017N19Rik
|
UTSW |
10 |
100,454,197 (GRCm39) |
unclassified |
probably benign |
|
|
R9105:1700017N19Rik
|
UTSW |
10 |
100,439,407 (GRCm39) |
nonsense |
probably null |
|
|
R9641:1700017N19Rik
|
UTSW |
10 |
100,430,498 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
Z1088:1700017N19Rik
|
UTSW |
10 |
100,441,501 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:1700017N19Rik
|
UTSW |
10 |
100,448,291 (GRCm39) |
missense |
probably damaging |
0.98 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGGAATACTACTGATAGCCTCAAAG -3'
(R):5'- CACGGTGGATAGTAACCTGAATTC -3'
Sequencing Primer
(F):5'- GGCTGTGGAAAAGAACAAGTTTTC -3'
(R):5'- TGTATGACTGAAATACATTCACCAAC -3'
|
| Posted On |
2020-09-15 |
Incidental Mutation