Mutagenetix > Incidental Mutation

Incidental Mutation 'R7922:Fam60a'

648440

Institutional Source

Beutler Lab

Gene Symbol

Fam60a

Ensembl Gene

ENSMUSG00000039985

Gene Name

family with sequence similarity 60, member A

Synonyms

Pptcs1, Tera

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably essential (E-score: 0.956) question?

Stock #

R7922 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

148921035-148946467 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 148926146 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 125 (T125S)

Ref Sequence

ENSEMBL: ENSMUSP00000050952 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054080] [ENSMUST00000081956] [ENSMUST00000111562] [ENSMUST00000132696] [ENSMUST00000139355] [ENSMUST00000146457] [ENSMUST00000203164] [ENSMUST00000204119] [ENSMUST00000204435] [ENSMUST00000204590]

AlphaFold

Q8C8M1

Predicted Effect

probably benign
Transcript: ENSMUST00000054080
AA Change: T125S

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000050952
Gene: ENSMUSG00000039985
AA Change: T125S

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	198	5.2e-86	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000081956
AA Change: T125S

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000107188
Gene: ENSMUSG00000039985
AA Change: T125S

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	200	5.5e-92	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111562
AA Change: T125S

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000107187
Gene: ENSMUSG00000039985
AA Change: T125S

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	200	5.5e-92	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000132696
AA Change: T125S

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000115417
Gene: ENSMUSG00000039985
AA Change: T125S

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	156	2.8e-68	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139355

SMART Domains

Protein: ENSMUSP00000119540
Gene: ENSMUSG00000039985

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	95	6.3e-61	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000146457

SMART Domains

Protein: ENSMUSP00000117859
Gene: ENSMUSG00000039985

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	53	1.2e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000203164

SMART Domains

Protein: ENSMUSP00000145370
Gene: ENSMUSG00000039985

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	133	8.1e-61	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204119

Predicted Effect

probably benign
Transcript: ENSMUST00000204435
AA Change: T125S

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000145487
Gene: ENSMUSG00000039985
AA Change: T125S

Domain	Start	End	E-Value	Type
Pfam:FAM60A	2	198	5.2e-86	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204590

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	C	T	12: 71,164,406	T638M	possibly damaging	Het
4930546C10Rik	A	G	18: 68,949,996		probably null	Het
Abi3	A	T	11: 95,832,793	Y342N	unknown	Het
Adk	G	A	14: 21,318,043	V195I	probably benign	Het
Ago2	C	T	15: 73,126,526	V268M	possibly damaging	Het
Apaf1	T	C	10: 90,999,753	I1077V	probably benign	Het
Arap1	A	T	7: 101,404,414	K1317*	probably null	Het
Auts2	T	A	5: 131,440,373	D493V		Het
Baz1b	A	T	5: 135,231,679	Q1110L	probably damaging	Het
Brsk2	T	A	7: 141,993,220	S467T	possibly damaging	Het
Btbd9	A	T	17: 30,274,884	M511K	probably benign	Het
Cdh23	T	A	10: 60,382,706	Y1385F	probably benign	Het
Cfap100	A	C	6: 90,403,980	L427V	unknown	Het
Cnga1	A	G	5: 72,604,882	F430L	possibly damaging	Het
Dnhd1	A	T	7: 105,668,514	D472V	probably damaging	Het
Dock2	T	A	11: 34,707,327	E339V	probably benign	Het
Eif3a	A	T	19: 60,775,842	V379E	probably damaging	Het
Erich4	T	A	7: 25,615,743	N36Y	probably damaging	Het
Frem2	T	C	3: 53,653,304	T1261A	probably damaging	Het
Fzd6	A	T	15: 39,031,108	D223V	probably damaging	Het
Gabra2	A	T	5: 71,007,972	Y218*	probably null	Het
Gcn1l1	G	T	5: 115,614,468	M2177I	probably benign	Het
Ghr	G	A	15: 3,341,074	T103I	possibly damaging	Het
Gipc1	T	C	8: 83,661,228	V79A	probably benign	Het
Gm10031	A	T	1: 156,524,992	L254F	probably damaging	Het
Gm13272	T	A	4: 88,780,340	V164D	probably damaging	Het
Gramd4	C	A	15: 86,131,958	H503Q	probably benign	Het
Gstm4	A	T	3: 108,044,671	M1K	probably null	Het
Heatr5b	T	A	17: 78,760,559	Q1800L	probably benign	Het
Hectd1	T	A	12: 51,790,195	K826*	probably null	Het
Hoxa9	T	C	6: 52,224,309	I251V	possibly damaging	Het
Il2ra	A	T	2: 11,674,366	I46F	possibly damaging	Het
Ints2	T	A	11: 86,244,627	R320S	probably benign	Het
Iscu	A	T	5: 113,774,282	N46I	probably damaging	Het
Iscu	G	A	5: 113,774,349	R60Q	unknown	Het
Kcnk3	A	T	5: 30,588,531	H72L	probably damaging	Het
Kmt2a	T	G	9: 44,842,860	S1228R	unknown	Het
Mbl2	T	A	19: 30,239,238	L150Q	probably damaging	Het
Med13	A	T	11: 86,271,005	F2166Y	probably damaging	Het
Mterf4	A	C	1: 93,301,553	L246*	probably null	Het
Muc16	T	C	9: 18,584,825	Q6690R	probably benign	Het
Myh10	T	A	11: 68,808,893	L1722Q	possibly damaging	Het
Neurod2	T	C	11: 98,327,628	M237V	probably benign	Het
Olfml1	A	G	7: 107,571,149	Y81C	probably damaging	Het
Olfr735	A	G	14: 50,346,415	V9A	probably benign	Het
Pcdhga7	A	T	18: 37,716,173	N411I	probably benign	Het
Pcdhgb8	T	C	18: 37,763,949	F691L	probably benign	Het
Pik3c2a	A	G	7: 116,391,282	V481A	probably damaging	Het
Pik3r6	A	T	11: 68,533,875	R435S	probably benign	Het
Pkd1l1	G	A	11: 8,849,013	H2250Y		Het
Pkd1l1	A	G	11: 8,909,857	S1034P		Het
Plcd1	C	A	9: 119,074,652	R400L	possibly damaging	Het
Ppp2r1a	A	G	17: 20,954,617	T58A	probably benign	Het
Ppp5c	T	C	7: 17,027,800	E5G	possibly damaging	Het
Pradc1	A	C	6: 85,447,968	F82L	probably benign	Het
Prkag3	A	T	1: 74,741,257	S416R	probably benign	Het
Rab3gap2	T	C	1: 185,249,920	C390R	probably benign	Het
Rhot1	A	G	11: 80,265,803	T655A	probably benign	Het
Rorc	A	G	3: 94,391,188	I348V	probably damaging	Het
Ryr1	A	T	7: 29,097,224	V1051E	probably benign	Het
Sema5b	GCAC	GC	16: 35,658,256		probably null	Het
Serpinb3c	G	A	1: 107,272,014	T259I	probably damaging	Het
Sh3gl1	A	T	17: 56,019,438	M70K	probably damaging	Het
Slc7a4	C	T	16: 17,573,366	V607I	probably benign	Het
Spop	A	T	11: 95,471,328	N62Y	probably damaging	Het
Spout1	A	G	2: 30,176,811	F130S	probably benign	Het
Tab1	A	G	15: 80,158,865	H420R	possibly damaging	Het
Tecpr2	CA	C	12: 110,932,642		probably null	Het
Tnxb	G	C	17: 34,714,603	K2332N	probably damaging	Het
Togaram1	T	C	12: 64,967,738	Y588H	probably damaging	Het
Trim71	G	A	9: 114,513,085	R710C	probably damaging	Het
Tsen54	C	T	11: 115,820,782	Q342*	probably null	Het
Ube2r2	T	A	4: 41,190,812	N235K	unknown	Het
Utrn	C	A	10: 12,667,527	K1792N	possibly damaging	Het
Vmn1r122	A	G	7: 21,133,662	I156T	possibly damaging	Het
Vmn1r94	T	C	7: 20,167,711	T223A	possibly damaging	Het
Vmn2r120	G	A	17: 57,524,683	R369W	probably damaging	Het
Vwa7	G	T	17: 35,024,433	A717S	possibly damaging	Het
Zc3h4	T	A	7: 16,425,722	C398S	unknown	Het
Zc3hc1	T	A	6: 30,390,875	E43V	possibly damaging	Het
Zfp101	A	T	17: 33,381,537	V415D	possibly damaging	Het
Zfp553	A	G	7: 127,236,596	H441R	probably damaging	Het

Other mutations in Fam60a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02442:Fam60a	APN	6	148928507	critical splice donor site	probably null
R0637:Fam60a	UTSW	6	148930665	intron	probably benign
R0710:Fam60a	UTSW	6	148933000	critical splice donor site	probably null
R3788:Fam60a	UTSW	6	148926119	missense	possibly damaging	0.86
R3789:Fam60a	UTSW	6	148926119	missense	possibly damaging	0.86
R4896:Fam60a	UTSW	6	148933000	critical splice donor site	probably null
R5574:Fam60a	UTSW	6	148944880	unclassified	probably benign
R7438:Fam60a	UTSW	6	148933102	missense	probably benign	0.15
R8970:Fam60a	UTSW	6	148933126	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ATAGAAAATGCCGCAGCCAGTG -3'
(R):5'- TCAGGTCTCTACATAGCTCTGGC -3'

Sequencing Primer
(F):5'- ACCGGAGTTCTATTAGAGC -3'
(R):5'- GCTCTGGCTGTACCTGC -3'

Posted On

2020-09-15