Mutagenetix > Incidental Mutation

Incidental Mutation 'R0015:Mdh1b'

64882

Institutional Source

Beutler Lab

Gene Symbol

Mdh1b

Ensembl Gene

ENSMUSG00000025963

Gene Name

malate dehydrogenase 1B, NAD (soluble)

Synonyms

1700124B08Rik

MMRRC Submission

038310-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R0015 (G1)

Quality Score

126

Status

Validated

Chromosome

Chromosomal Location

63698819-63730318 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 63721800 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000109728 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000114094]

AlphaFold

Q5F204

Predicted Effect

probably benign
Transcript: ENSMUST00000114094

SMART Domains

Protein: ENSMUSP00000109728
Gene: ENSMUSG00000025963

Domain	Start	End	E-Value	Type
low complexity region	69	81	N/A	INTRINSIC
SCOP:d1b8pa1	131	282	1e-16	SMART
PDB:5MDH\|B	131	457	3e-32	PDB
SCOP:d7mdha2	290	454	7e-18	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.2%

Validation Efficiency

97% (71/73)

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410089E03Rik	G	A	15: 8,186,184	R408H	probably damaging	Het
A130050O07Rik	A	G	1: 137,928,656	Y23C	unknown	Het
Adcy3	G	A	12: 4,195,260		probably null	Het
Aldh6a1	G	A	12: 84,441,780	L86F	probably damaging	Het
Arl10	G	T	13: 54,575,957		probably benign	Het
Armc3	A	G	2: 19,296,321		probably null	Het
Astn2	T	G	4: 66,266,382		probably null	Het
Cacna1d	G	A	14: 30,114,971	T804I	probably benign	Het
Ccny	A	C	18: 9,316,682		probably benign	Het
Cdh5	C	T	8: 104,140,927	T612I	probably benign	Het
Cfap58	A	G	19: 48,029,100	M800V	probably benign	Het
Clrn1	A	T	3: 58,846,427	I171K	probably damaging	Het
Cnp	T	A	11: 100,578,908		probably null	Het
Col12a1	T	C	9: 79,651,385	T1933A	probably damaging	Het
Cwf19l2	A	G	9: 3,454,666	S660G	probably benign	Het
Dync1i2	C	A	2: 71,214,484	R13S	probably damaging	Het
Eps8l1	A	T	7: 4,477,557		probably benign	Het
Espn	T	C	4: 152,139,152	T188A	possibly damaging	Het
F2	T	C	2: 91,630,607	E260G	probably benign	Het
Fat4	T	A	3: 38,982,503	S3435T	probably damaging	Het
Fchsd1	A	G	18: 37,962,959	C533R	probably benign	Het
Fstl5	G	A	3: 76,322,191	V100M	probably damaging	Het
Gls2	T	G	10: 128,209,350	L572R	probably damaging	Het
Gm20939	A	T	17: 94,876,768	E281D	probably benign	Het
Gpr35	T	G	1: 92,983,232	L222W	probably damaging	Het
Hsf5	C	A	11: 87,657,335	H615N	probably benign	Het
Id2	C	T	12: 25,095,803	D70N	probably damaging	Het
Ints2	T	C	11: 86,249,287	T240A	probably damaging	Het
Kcnn3	A	C	3: 89,662,773	D631A	probably damaging	Het
Klhdc8a	A	G	1: 132,303,005	T203A	probably damaging	Het
Lama4	C	T	10: 39,075,436	T1059M	possibly damaging	Het
Lgals8	A	G	13: 12,447,298	L226P	probably damaging	Het
Lifr	T	A	15: 7,188,186		probably null	Het
Lonp1	T	A	17: 56,618,406	Q462L	probably benign	Het
Lypd1	A	G	1: 125,910,438	V48A	possibly damaging	Het
Mapkapk2	A	G	1: 131,097,326	I67T	possibly damaging	Het
Mbd3l1	A	T	9: 18,484,858	D93V	probably benign	Het
Myh7b	C	T	2: 155,622,286	P569L	probably damaging	Het
Ncapd3	C	A	9: 27,051,809	A470E	probably damaging	Het
Ndrg2	A	G	14: 51,910,445		probably benign	Het
Nprl2	A	T	9: 107,544,419	I209F	probably damaging	Het
Ntrk1	A	G	3: 87,791,750		probably benign	Het
Olfm2	T	C	9: 20,668,741	E268G	probably damaging	Het
Olfr884	T	A	9: 38,047,667	Y148*	probably null	Het
Pcf11	T	A	7: 92,658,317	H881L	probably benign	Het
Pde10a	A	G	17: 8,977,197	D640G	probably damaging	Het
Pde9a	G	A	17: 31,386,356		probably null	Het
Pianp	G	T	6: 125,001,540	G236V	probably damaging	Het
Polr2g	A	G	19: 8,793,652	I160T	probably damaging	Het
Ppp1r3a	A	G	6: 14,717,661	S1085P	possibly damaging	Het
Pter	G	A	2: 13,001,000	G328D	probably damaging	Het
Rad51	T	A	2: 119,116,327	M5K	probably benign	Het
Rbm43	T	A	2: 51,925,667	I181F	probably benign	Het
Rgs12	T	C	5: 35,022,776		probably benign	Het
Rnf213	A	C	11: 119,441,606	D2547A	possibly damaging	Het
Slc20a2	C	A	8: 22,535,345	A21E	probably damaging	Het
Stab2	A	G	10: 86,843,617	S2503P	probably benign	Het
Sv2b	A	T	7: 75,125,641	F479L	probably damaging	Het
Sybu	T	C	15: 44,673,500	R349G	probably damaging	Het
Tead3	T	C	17: 28,341,351	Y2C	probably damaging	Het
Tnrc6c	T	A	11: 117,721,458	N307K	probably damaging	Het
Ubxn11	C	G	4: 134,116,025		probably null	Het
Ust	T	C	10: 8,330,065		probably benign	Het
Vmn2r116	T	A	17: 23,401,849	N852K	probably benign	Het
Zgrf1	T	C	3: 127,555,397		probably benign	Het

Other mutations in Mdh1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01694:Mdh1b	APN	1	63711106	splice site	probably benign
IGL02314:Mdh1b	APN	1	63711114	critical splice donor site	probably null
IGL02390:Mdh1b	APN	1	63721557	missense	probably benign	0.27
IGL02582:Mdh1b	APN	1	63719597	missense	probably benign	0.08
IGL02864:Mdh1b	APN	1	63721603	missense	probably benign	0.00
IGL02887:Mdh1b	APN	1	63715364	splice site	probably benign
IGL03073:Mdh1b	APN	1	63721487	critical splice donor site	probably null
IGL03372:Mdh1b	APN	1	63719995	missense	possibly damaging	0.64
IGL02835:Mdh1b	UTSW	1	63718657	missense	probably damaging	1.00
R0015:Mdh1b	UTSW	1	63721800	splice site	probably benign
R0255:Mdh1b	UTSW	1	63719618	missense	probably damaging	1.00
R1750:Mdh1b	UTSW	1	63719522	missense	probably benign
R2057:Mdh1b	UTSW	1	63721582	missense	probably benign	0.11
R3177:Mdh1b	UTSW	1	63711531	missense	possibly damaging	0.93
R3277:Mdh1b	UTSW	1	63711531	missense	possibly damaging	0.93
R3522:Mdh1b	UTSW	1	63719768	missense	probably damaging	0.97
R4938:Mdh1b	UTSW	1	63711504	missense	probably benign	0.00
R4967:Mdh1b	UTSW	1	63719863	missense	probably damaging	1.00
R5093:Mdh1b	UTSW	1	63711461	missense	probably benign	0.08
R5160:Mdh1b	UTSW	1	63725645	missense	probably null	0.01
R5311:Mdh1b	UTSW	1	63720004	missense	probably benign	0.00
R6345:Mdh1b	UTSW	1	63715239	missense	possibly damaging	0.52
R6974:Mdh1b	UTSW	1	63721816	missense	probably benign	0.00
R7073:Mdh1b	UTSW	1	63721560	missense	probably damaging	1.00
R7728:Mdh1b	UTSW	1	63715270	missense	probably benign	0.23
R7780:Mdh1b	UTSW	1	63719974	missense	possibly damaging	0.76
R8271:Mdh1b	UTSW	1	63720005	missense	possibly damaging	0.62
R8556:Mdh1b	UTSW	1	63710982	splice site	probably null
R8681:Mdh1b	UTSW	1	63715201	missense	probably benign
Z1176:Mdh1b	UTSW	1	63711531	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GTCGTCATGTTGGAAGTGACACCATAG -3'
(R):5'- ACAAGATTGAACTGAGTTCTTGGGCAG -3'

Sequencing Primer
(F):5'- TTGGAAGTGACACCATAGTAAAGC -3'
(R):5'- TGAGTTCTTGGGCAGATTTAATAATG -3'

Posted On

2013-08-06