Incidental Mutation 'R7938:Vmn2r52'
ID 648863
Institutional Source Beutler Lab
Gene Symbol Vmn2r52
Ensembl Gene ENSMUSG00000091930
Gene Name vomeronasal 2, receptor 52
Synonyms EG384534
MMRRC Submission 045984-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.080) question?
Stock # R7938 (G1)
Quality Score 225.009
Status Validated
Chromosome 7
Chromosomal Location 9892579-9910213 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 9893300 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 613 (D613G)
Ref Sequence ENSEMBL: ENSMUSP00000129352 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000164918]
AlphaFold L7N2B2
Predicted Effect probably benign
Transcript: ENSMUST00000164918
AA Change: D613G

PolyPhen 2 Score 0.124 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000129352
Gene: ENSMUSG00000091930
AA Change: D613G

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:ANF_receptor 73 469 8.1e-29 PFAM
Pfam:NCD3G 512 565 1.5e-19 PFAM
Pfam:7tm_3 596 833 1.1e-55 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 98% (63/64)
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ampd2 C A 3: 107,987,432 (GRCm39) V134L probably benign Het
Bcam T G 7: 19,490,738 (GRCm39) E586D probably benign Het
Bmp7 A C 2: 172,721,283 (GRCm39) I264S probably benign Het
Casz1 G A 4: 149,028,943 (GRCm39) M1129I probably benign Het
Ccdc59 T A 10: 105,677,455 (GRCm39) N31K probably benign Het
Cfap61 A G 2: 145,887,376 (GRCm39) Y607C probably benign Het
Cnga1 T C 5: 72,761,597 (GRCm39) E639G probably benign Het
Coch T A 12: 51,643,366 (GRCm39) probably null Het
Col6a6 A C 9: 105,657,883 (GRCm39) Y776* probably null Het
Cyp1a1 T G 9: 57,609,073 (GRCm39) L318R probably damaging Het
Cyp3a16 T A 5: 145,389,666 (GRCm39) Y233F probably benign Het
Dgkz G T 2: 91,795,817 (GRCm39) R42S probably damaging Het
Dner A G 1: 84,673,218 (GRCm39) Y78H possibly damaging Het
Fat2 T C 11: 55,163,922 (GRCm39) N3111S probably damaging Het
Frmpd2 T C 14: 33,260,246 (GRCm39) S768P probably benign Het
Gm45861 T A 8: 28,071,990 (GRCm39) N1269K unknown Het
Gpr12 T A 5: 146,520,094 (GRCm39) Y276F possibly damaging Het
Hace1 C T 10: 45,562,792 (GRCm39) P769L probably benign Het
Hapln1 G A 13: 89,753,347 (GRCm39) R171H probably damaging Het
Hlx T G 1: 184,464,125 (GRCm39) T72P probably benign Het
Iqcm G T 8: 76,304,596 (GRCm39) C119F probably benign Het
Katna1 G T 10: 7,637,075 (GRCm39) A409S probably benign Het
Kcnip2 A T 19: 45,782,729 (GRCm39) I204N probably damaging Het
Kel G T 6: 41,675,310 (GRCm39) Q314K probably benign Het
Klf5 T C 14: 99,536,444 (GRCm39) V5A probably damaging Het
Lax1 A T 1: 133,607,896 (GRCm39) C282S probably benign Het
Lyar A G 5: 38,388,295 (GRCm39) T274A probably benign Het
Mboat1 A G 13: 30,415,959 (GRCm39) H306R possibly damaging Het
Morn5 A T 2: 35,947,082 (GRCm39) Y120F probably benign Het
Mrgprx2 T C 7: 48,132,240 (GRCm39) T193A probably benign Het
Myh10 T A 11: 68,583,327 (GRCm39) W8R unknown Het
Nfasc A G 1: 132,533,269 (GRCm39) V644A probably damaging Het
Nup153 G T 13: 46,842,855 (GRCm39) probably null Het
Nup50l T C 6: 96,141,866 (GRCm39) K393E possibly damaging Het
Or1o4 T A 17: 37,590,991 (GRCm39) M107L probably benign Het
Or4x6 A T 2: 89,949,173 (GRCm39) Y256* probably null Het
Or5h19 A T 16: 58,856,325 (GRCm39) Y258* probably null Het
Orc4 A T 2: 48,800,203 (GRCm39) V315E possibly damaging Het
Pcsk5 T A 19: 17,443,549 (GRCm39) probably null Het
Pif1 A G 9: 65,502,073 (GRCm39) D635G probably benign Het
Plscr4 C T 9: 92,372,843 (GRCm39) R322* probably null Het
Ppfia2 A G 10: 106,310,648 (GRCm39) T52A probably damaging Het
Ppp1r36 A T 12: 76,485,180 (GRCm39) D301V probably damaging Het
Prss46 A G 9: 110,680,500 (GRCm39) N215S probably benign Het
Qser1 A C 2: 104,619,312 (GRCm39) V410G probably damaging Het
Reln A C 5: 22,155,870 (GRCm39) N2207K probably damaging Het
Rimkla A G 4: 119,327,810 (GRCm39) V180A probably benign Het
Rpa1 CA C 11: 75,198,050 (GRCm39) probably null Het
Rsph3a G T 17: 8,165,050 (GRCm39) E137* probably null Het
Spata31f1a A G 4: 42,850,765 (GRCm39) S464P possibly damaging Het
Sqle C A 15: 59,196,315 (GRCm39) H369Q probably damaging Het
Srebf2 T A 15: 82,057,016 (GRCm39) D250E probably damaging Het
Svs3b A T 2: 164,097,567 (GRCm39) C251* probably null Het
Tdrd9 A T 12: 111,997,649 (GRCm39) N713Y possibly damaging Het
Terf2ip T C 8: 112,738,717 (GRCm39) S202P possibly damaging Het
Trank1 A G 9: 111,194,096 (GRCm39) T707A probably benign Het
Trav8-1 T G 14: 53,707,688 (GRCm39) D109E possibly damaging Het
Trem2 T A 17: 48,658,777 (GRCm39) S181T probably benign Het
Trim37 A G 11: 87,037,863 (GRCm39) N199S probably benign Het
Tshz3 T C 7: 36,468,583 (GRCm39) F191L probably damaging Het
Ubxn8 A G 8: 34,111,712 (GRCm39) M227T probably damaging Het
Uggt2 T A 14: 119,296,519 (GRCm39) I448F possibly damaging Het
Usp47 T A 7: 111,687,132 (GRCm39) L697M probably damaging Het
Wdr81 T C 11: 75,338,828 (GRCm39) T1444A probably benign Het
Zfp423 T C 8: 88,622,304 (GRCm39) Y11C unknown Het
Zw10 T A 9: 48,982,933 (GRCm39) D521E probably benign Het
Other mutations in Vmn2r52
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00088:Vmn2r52 APN 7 9,903,023 (GRCm39) missense probably benign 0.30
IGL00328:Vmn2r52 APN 7 9,905,344 (GRCm39) missense probably benign 0.12
IGL00980:Vmn2r52 APN 7 9,905,017 (GRCm39) missense probably damaging 1.00
IGL01468:Vmn2r52 APN 7 9,892,868 (GRCm39) missense probably damaging 1.00
IGL01660:Vmn2r52 APN 7 9,893,107 (GRCm39) missense probably damaging 0.97
IGL02215:Vmn2r52 APN 7 9,905,029 (GRCm39) missense probably damaging 0.97
IGL03030:Vmn2r52 APN 7 9,892,799 (GRCm39) missense probably benign 0.12
IGL03212:Vmn2r52 APN 7 9,893,474 (GRCm39) missense possibly damaging 0.47
FR4589:Vmn2r52 UTSW 7 9,892,947 (GRCm39) missense probably damaging 0.97
PIT4283001:Vmn2r52 UTSW 7 9,904,756 (GRCm39) missense possibly damaging 0.89
R0184:Vmn2r52 UTSW 7 9,893,265 (GRCm39) missense probably damaging 1.00
R0190:Vmn2r52 UTSW 7 9,905,315 (GRCm39) missense probably benign 0.00
R0240:Vmn2r52 UTSW 7 9,893,327 (GRCm39) missense probably damaging 0.99
R0240:Vmn2r52 UTSW 7 9,893,327 (GRCm39) missense probably damaging 0.99
R0257:Vmn2r52 UTSW 7 9,904,982 (GRCm39) nonsense probably null
R0310:Vmn2r52 UTSW 7 9,893,393 (GRCm39) missense probably damaging 1.00
R1831:Vmn2r52 UTSW 7 9,893,415 (GRCm39) missense probably damaging 1.00
R1862:Vmn2r52 UTSW 7 9,907,333 (GRCm39) missense possibly damaging 0.94
R2484:Vmn2r52 UTSW 7 9,903,058 (GRCm39) missense probably damaging 0.96
R2510:Vmn2r52 UTSW 7 9,904,795 (GRCm39) missense probably benign
R3625:Vmn2r52 UTSW 7 9,893,105 (GRCm39) missense probably damaging 1.00
R3803:Vmn2r52 UTSW 7 9,907,439 (GRCm39) missense probably damaging 1.00
R4013:Vmn2r52 UTSW 7 9,904,603 (GRCm39) missense probably benign 0.00
R4283:Vmn2r52 UTSW 7 9,904,565 (GRCm39) missense possibly damaging 0.60
R4324:Vmn2r52 UTSW 7 9,904,940 (GRCm39) missense possibly damaging 0.94
R4578:Vmn2r52 UTSW 7 9,904,617 (GRCm39) missense probably damaging 1.00
R4806:Vmn2r52 UTSW 7 9,893,169 (GRCm39) missense probably damaging 1.00
R5083:Vmn2r52 UTSW 7 9,893,392 (GRCm39) nonsense probably null
R5249:Vmn2r52 UTSW 7 9,910,197 (GRCm39) missense probably benign
R5306:Vmn2r52 UTSW 7 9,904,672 (GRCm39) missense possibly damaging 0.88
R5332:Vmn2r52 UTSW 7 9,903,052 (GRCm39) missense probably benign 0.17
R5617:Vmn2r52 UTSW 7 9,904,861 (GRCm39) missense probably damaging 0.99
R5643:Vmn2r52 UTSW 7 9,905,059 (GRCm39) missense probably damaging 1.00
R5749:Vmn2r52 UTSW 7 9,892,959 (GRCm39) missense probably damaging 1.00
R5763:Vmn2r52 UTSW 7 9,905,231 (GRCm39) missense probably benign 0.01
R6103:Vmn2r52 UTSW 7 9,905,327 (GRCm39) missense probably benign 0.36
R6148:Vmn2r52 UTSW 7 9,905,090 (GRCm39) missense probably benign 0.00
R6356:Vmn2r52 UTSW 7 9,902,926 (GRCm39) missense probably benign 0.01
R6412:Vmn2r52 UTSW 7 9,904,936 (GRCm39) missense probably benign
R6657:Vmn2r52 UTSW 7 9,893,090 (GRCm39) missense probably damaging 0.99
R6997:Vmn2r52 UTSW 7 9,902,998 (GRCm39) missense probably benign 0.06
R7395:Vmn2r52 UTSW 7 9,904,744 (GRCm39) missense probably benign 0.00
R7621:Vmn2r52 UTSW 7 9,907,274 (GRCm39) missense probably benign 0.00
R7691:Vmn2r52 UTSW 7 9,893,109 (GRCm39) missense probably damaging 0.97
R7852:Vmn2r52 UTSW 7 9,892,895 (GRCm39) missense probably damaging 1.00
R7908:Vmn2r52 UTSW 7 9,896,877 (GRCm39) missense probably benign
R7909:Vmn2r52 UTSW 7 9,896,877 (GRCm39) missense probably benign
R7912:Vmn2r52 UTSW 7 9,896,877 (GRCm39) missense probably benign
R7913:Vmn2r52 UTSW 7 9,896,877 (GRCm39) missense probably benign
R8884:Vmn2r52 UTSW 7 9,892,734 (GRCm39) missense probably damaging 1.00
R9003:Vmn2r52 UTSW 7 9,905,181 (GRCm39) missense probably benign 0.07
R9140:Vmn2r52 UTSW 7 9,892,643 (GRCm39) missense probably damaging 0.99
R9141:Vmn2r52 UTSW 7 9,905,331 (GRCm39) nonsense probably null
R9500:Vmn2r52 UTSW 7 9,905,281 (GRCm39) missense probably damaging 1.00
R9562:Vmn2r52 UTSW 7 9,893,476 (GRCm39) missense probably benign 0.22
R9564:Vmn2r52 UTSW 7 9,905,182 (GRCm39) missense probably benign 0.15
R9565:Vmn2r52 UTSW 7 9,893,476 (GRCm39) missense probably benign 0.22
R9597:Vmn2r52 UTSW 7 9,904,719 (GRCm39) nonsense probably null
R9743:Vmn2r52 UTSW 7 9,904,606 (GRCm39) missense possibly damaging 0.81
Z1176:Vmn2r52 UTSW 7 9,905,127 (GRCm39) missense probably damaging 0.97
Z1177:Vmn2r52 UTSW 7 9,903,117 (GRCm39) missense possibly damaging 0.93
Predicted Primers PCR Primer
(F):5'- GGCCTGTGAATTTGAAAGCC -3'
(R):5'- GATATGGATCACTGTGTGAATTGTCC -3'

Sequencing Primer
(F):5'- AGCCAGAATGACAGTGACTGTTTTG -3'
(R):5'- TTGTCCAGAATACCAGTATGCC -3'
Posted On 2020-09-15