Incidental Mutation 'R7945:Clec1a'
ID 649285
Institutional Source Beutler Lab
Gene Symbol Clec1a
Ensembl Gene ENSMUSG00000033082
Gene Name C-type lectin domain family 1, member a
Synonyms 5930406N14Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.053) question?
Stock # R7945 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 129403647-129428963 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 129409150 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Glycine at position 159 (S159G)
Ref Sequence ENSEMBL: ENSMUSP00000047065 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037481] [ENSMUST00000203162] [ENSMUST00000204012] [ENSMUST00000204952]
AlphaFold Q8BWY2
Predicted Effect probably benign
Transcript: ENSMUST00000037481
AA Change: S159G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000047065
Gene: ENSMUSG00000033082
AA Change: S159G

DomainStartEndE-ValueType
Blast:CLECT 1 48 9e-23 BLAST
transmembrane domain 49 71 N/A INTRINSIC
coiled coil region 82 120 N/A INTRINSIC
CLECT 136 257 7.55e-20 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000203162
AA Change: S159G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000144896
Gene: ENSMUSG00000033082
AA Change: S159G

DomainStartEndE-ValueType
Blast:CLECT 1 48 1e-23 BLAST
transmembrane domain 50 72 N/A INTRINSIC
coiled coil region 82 120 N/A INTRINSIC
CLECT 136 205 5.1e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000204012
AA Change: S126G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000145071
Gene: ENSMUSG00000033082
AA Change: S126G

DomainStartEndE-ValueType
Blast:CLECT 1 37 3e-16 BLAST
coiled coil region 49 87 N/A INTRINSIC
PDB:1MPU|A 100 146 2e-9 PDB
SCOP:d1k9ja_ 100 146 3e-13 SMART
Blast:CLECT 103 165 2e-42 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000204952
SMART Domains Protein: ENSMUSP00000145497
Gene: ENSMUSG00000033082

DomainStartEndE-ValueType
Blast:CLECT 1 41 1e-17 BLAST
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signaling, glycoprotein turnover, and roles in inflammation and immune response. The encoded protein may play a role in regulating dendritic cell function. This gene is closely linked to other CTL/CTLD superfamily members on chromosome 12p13 in the natural killer gene complex region. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adprhl1 T A 8: 13,271,929 (GRCm39) R1610W probably damaging Het
Afg3l1 C A 8: 124,216,661 (GRCm39) A300E probably benign Het
Ano6 A G 15: 95,839,190 (GRCm39) Y423C probably damaging Het
Armh4 T A 14: 50,010,670 (GRCm39) T346S probably benign Het
Bltp1 G A 3: 37,020,042 (GRCm39) V2093I probably benign Het
Casp8ap2 A G 4: 32,645,909 (GRCm39) T1661A probably benign Het
Cdc42ep1 T A 15: 78,731,973 (GRCm39) S139R possibly damaging Het
Cep57 A G 9: 13,730,227 (GRCm39) Y104H probably damaging Het
Chrna4 T C 2: 180,670,454 (GRCm39) D434G probably benign Het
Cltc A T 11: 86,627,967 (GRCm39) N60K probably benign Het
Cpq T A 15: 33,594,382 (GRCm39) D464E probably benign Het
Ctcfl A C 2: 172,960,451 (GRCm39) V44G probably benign Het
Dcstamp T A 15: 39,623,797 (GRCm39) *471R probably null Het
Disp2 G A 2: 118,623,270 (GRCm39) R1334H probably damaging Het
Dspp TGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCAACAGCAGTGACAGCAG TGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCAACAGCAGTGACAGCAG 5: 104,326,227 (GRCm39) probably benign Het
Ephb3 A G 16: 21,040,434 (GRCm39) T811A probably damaging Het
Fbxo21 T C 5: 118,146,212 (GRCm39) Y612H possibly damaging Het
Gm8005 T A 14: 42,260,330 (GRCm39) D102V Het
Golgb1 T C 16: 36,734,466 (GRCm39) S1279P probably benign Het
Hdgfl3 T C 7: 81,583,706 (GRCm39) Y22C possibly damaging Het
Hpse2 T C 19: 43,373,248 (GRCm39) N127S probably benign Het
Hrnr G T 3: 93,239,506 (GRCm39) G3248V unknown Het
Krtap27-1 T C 16: 88,468,340 (GRCm39) N68S probably benign Het
Lipo3 T C 19: 33,533,831 (GRCm39) M334V probably benign Het
Lrrc34 A G 3: 30,696,886 (GRCm39) probably null Het
Ltbp1 T G 17: 75,697,546 (GRCm39) *1713G probably null Het
Lypd6b A G 2: 49,833,612 (GRCm39) E84G probably damaging Het
Meiosin T A 7: 18,834,011 (GRCm39) K508N unknown Het
Mitd1 T C 1: 37,924,346 (GRCm39) Y68C probably damaging Het
Mrgprx2 T C 7: 48,132,753 (GRCm39) T22A probably benign Het
Mroh4 C T 15: 74,496,554 (GRCm39) E278K probably damaging Het
Mtmr4 T C 11: 87,495,254 (GRCm39) V437A probably damaging Het
Neb T C 2: 52,161,360 (GRCm39) D2144G probably damaging Het
Obscn T A 11: 58,984,235 (GRCm39) E1740V probably damaging Het
Or2bd2 A G 7: 6,443,354 (GRCm39) T152A probably benign Het
Or8i2 A G 2: 86,852,657 (GRCm39) V77A probably benign Het
Pcsk1 G A 13: 75,280,211 (GRCm39) A679T probably benign Het
Pdap1 G A 5: 145,068,249 (GRCm39) A138V probably damaging Het
Pdzph1 T C 17: 59,239,455 (GRCm39) T958A probably damaging Het
Plekha5 T A 6: 140,526,201 (GRCm39) H946Q possibly damaging Het
Ppat C A 5: 77,063,238 (GRCm39) V458L probably benign Het
Rock1 A G 18: 10,116,831 (GRCm39) L435P probably damaging Het
Rtn2 T A 7: 19,020,987 (GRCm39) S153R probably benign Het
Serpinb1c A T 13: 33,070,192 (GRCm39) H123Q probably benign Het
Slc1a5 C A 7: 16,523,807 (GRCm39) R271S possibly damaging Het
Slc23a3 A G 1: 75,106,040 (GRCm39) probably null Het
Slc7a6 C T 8: 106,906,239 (GRCm39) P157L possibly damaging Het
Syne2 A T 12: 75,951,079 (GRCm39) E410V probably damaging Het
Tasor2 A T 13: 3,626,085 (GRCm39) S1288R probably benign Het
Thoc2l G T 5: 104,666,413 (GRCm39) V312F possibly damaging Het
Treh T C 9: 44,592,584 (GRCm39) V63A probably damaging Het
Trim50 T A 5: 135,382,156 (GRCm39) W3R probably benign Het
Ttc6 T G 12: 57,707,229 (GRCm39) L712R possibly damaging Het
Ttn G T 2: 76,715,309 (GRCm39) Q7928K unknown Het
Ugt3a1 T C 15: 9,284,261 (GRCm39) probably null Het
Wapl T C 14: 34,399,105 (GRCm39) I58T probably benign Het
Zgrf1 A G 3: 127,356,409 (GRCm39) E545G probably benign Het
Zmat4 T A 8: 24,238,436 (GRCm39) I6N possibly damaging Het
Zp3r G T 1: 130,524,560 (GRCm39) P226Q probably damaging Het
Other mutations in Clec1a
AlleleSourceChrCoordTypePredicted EffectPPH Score
Truck UTSW 6 129,413,918 (GRCm39) missense probably damaging 1.00
Turnip UTSW 6 129,406,946 (GRCm39) missense probably benign 0.21
R1666:Clec1a UTSW 6 129,413,967 (GRCm39) missense probably benign 0.07
R2413:Clec1a UTSW 6 129,412,218 (GRCm39) missense probably damaging 1.00
R6400:Clec1a UTSW 6 129,412,316 (GRCm39) splice site probably null
R6921:Clec1a UTSW 6 129,405,827 (GRCm39) missense probably damaging 1.00
R6961:Clec1a UTSW 6 129,406,946 (GRCm39) missense probably benign 0.21
R7218:Clec1a UTSW 6 129,413,918 (GRCm39) missense probably damaging 1.00
R7944:Clec1a UTSW 6 129,409,150 (GRCm39) missense probably benign
R8787:Clec1a UTSW 6 129,428,617 (GRCm39) missense possibly damaging 0.94
R9215:Clec1a UTSW 6 129,412,134 (GRCm39) missense possibly damaging 0.59
R9255:Clec1a UTSW 6 129,409,208 (GRCm39) missense probably benign 0.00
R9275:Clec1a UTSW 6 129,428,564 (GRCm39) splice site probably benign
R9449:Clec1a UTSW 6 129,428,606 (GRCm39) missense probably benign
Z1177:Clec1a UTSW 6 129,406,870 (GRCm39) missense probably benign 0.09
Predicted Primers
Posted On 2020-09-15