Mutagenetix > Incidental Mutation

Incidental Mutation 'R7952:Xkr4'

649592

Institutional Source

Beutler Lab

Gene Symbol

Xkr4

Ensembl Gene

ENSMUSG00000051951

Gene Name

X-linked Kx blood group related 4

Synonyms

MMRRC Submission

045996-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7952 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

3276124-3741721 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 3740842 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 244 (S244P)

Ref Sequence

ENSEMBL: ENSMUSP00000070648 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070533]

AlphaFold

Q5GH67

Predicted Effect

possibly damaging
Transcript: ENSMUST00000070533
AA Change: S244P

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000070648
Gene: ENSMUSG00000051951
AA Change: S244P

Domain	Start	End	E-Value	Type
low complexity region	49	99	N/A	INTRINSIC
Pfam:XK-related	111	513	2.6e-128	PFAM
low complexity region	573	586	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

98% (47/48)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acbd3	T	C	1: 180,579,903 (GRCm39)	S516P	possibly damaging	Het
Adora1	A	G	1: 134,131,024 (GRCm39)	S216P	possibly damaging	Het
Arhgap17	G	T	7: 122,885,914 (GRCm39)	S739R	probably benign	Het
Bphl	A	G	13: 34,230,780 (GRCm39)	T75A	probably benign	Het
Ccdc73	G	A	2: 104,775,801 (GRCm39)		probably null	Het
Cela3b	T	C	4: 137,149,219 (GRCm39)	I262V	probably benign	Het
Chpf	T	C	1: 75,455,586 (GRCm39)	N55S	probably benign	Het
Chst8	A	G	7: 34,374,919 (GRCm39)	Y307H	probably damaging	Het
Cmtm2b	G	T	8: 105,057,203 (GRCm39)	E188*	probably null	Het
Cmya5	TTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAG	TTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAG	13: 93,233,512 (GRCm39)		probably benign	Het
Cxadr	C	T	16: 78,131,123 (GRCm39)	T213M	possibly damaging	Het
D3Ertd751e	T	A	3: 41,703,096 (GRCm39)		probably null	Het
Dhx32	T	C	7: 133,350,725 (GRCm39)	Y115C	probably benign	Het
Dop1b	C	A	16: 93,546,848 (GRCm39)	T284K	possibly damaging	Het
Dync2h1	A	G	9: 7,129,802 (GRCm39)	V1732A	possibly damaging	Het
Egf	C	T	3: 129,533,645 (GRCm39)	R65Q	probably damaging	Het
Fat4	T	G	3: 38,945,870 (GRCm39)	S1588A	probably damaging	Het
Fmnl3	A	G	15: 99,220,518 (GRCm39)	V588A	probably damaging	Het
Galnt3	C	T	2: 65,928,186 (GRCm39)	E237K	probably benign	Het
Grik2	T	C	10: 49,298,633 (GRCm39)	I363V	probably benign	Het
Grik3	C	T	4: 125,598,340 (GRCm39)	T769I	probably damaging	Het
Hpd	A	T	5: 123,316,327 (GRCm39)	D141E	possibly damaging	Het
Hrc	A	T	7: 44,985,692 (GRCm39)	D281V	probably damaging	Het
Igfn1	A	T	1: 135,891,693 (GRCm39)	I2274K	probably damaging	Het
Iqgap3	A	G	3: 88,005,677 (GRCm39)	I502V	probably benign	Het
Kcnh8	A	T	17: 53,266,493 (GRCm39)	Q835L	probably benign	Het
Kmt2d	C	T	15: 98,748,649 (GRCm39)	G2892R	unknown	Het
Lama4	T	G	10: 38,906,486 (GRCm39)	I284S	probably benign	Het
Madd	C	A	2: 90,992,886 (GRCm39)	G1011V	probably damaging	Het
Mroh2b	T	C	15: 4,980,693 (GRCm39)	F1421L	probably damaging	Het
Nadk	G	T	4: 155,661,524 (GRCm39)	D17Y	probably benign	Het
Nedd9	C	A	13: 41,470,431 (GRCm39)	D241Y	probably damaging	Het
Notch2	T	C	3: 98,007,552 (GRCm39)	V434A	probably benign	Het
Ofcc1	C	T	13: 40,433,781 (GRCm39)	R108Q	probably benign	Het
Or10al2	T	C	17: 37,983,708 (GRCm39)	Y265H	probably damaging	Het
Or51g1	A	G	7: 102,633,721 (GRCm39)	F217L	probably benign	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Pramel41	T	C	5: 94,594,902 (GRCm39)	V254A	probably benign	Het
Prss55	A	G	14: 64,313,132 (GRCm39)	Y251H	probably damaging	Het
Rec8	T	C	14: 55,862,760 (GRCm39)	V573A	possibly damaging	Het
Ryr2	T	C	13: 11,661,313 (GRCm39)		probably null	Het
Sec31b	A	G	19: 44,508,979 (GRCm39)	S667P	probably benign	Het
Smim17	A	G	7: 6,427,849 (GRCm39)	D45G	possibly damaging	Het
Sspo	A	G	6: 48,464,263 (GRCm39)	T3906A	probably damaging	Het
Tanc2	G	T	11: 105,787,423 (GRCm39)	G908W	probably damaging	Het
Tcf7l2	A	T	19: 55,886,989 (GRCm39)	M1L	probably benign	Het
Tpx2	C	T	2: 152,735,514 (GRCm39)	A714V	probably damaging	Het
Trgc4	T	A	13: 19,533,740 (GRCm39)	S121R		Het
Trmt1	G	A	8: 85,415,969 (GRCm39)	R9H	possibly damaging	Het
Unc13a	A	T	8: 72,111,131 (GRCm39)	V360E	possibly damaging	Het
Vmn1r225	T	A	17: 20,722,589 (GRCm39)	I10N	probably damaging	Het
Zkscan14	G	T	5: 145,132,708 (GRCm39)	H274Q	probably damaging	Het

Other mutations in Xkr4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03398:Xkr4	APN	1	3,286,798 (GRCm39)	missense	probably damaging	1.00
R0200:Xkr4	UTSW	1	3,740,886 (GRCm39)	missense	probably benign	0.00
R0829:Xkr4	UTSW	1	3,741,469 (GRCm39)	missense	possibly damaging	0.59
R0830:Xkr4	UTSW	1	3,740,968 (GRCm39)	missense	possibly damaging	0.48
R0959:Xkr4	UTSW	1	3,286,897 (GRCm39)	missense	probably damaging	1.00
R1242:Xkr4	UTSW	1	3,286,360 (GRCm39)	missense	probably damaging	1.00
R1257:Xkr4	UTSW	1	3,287,036 (GRCm39)	missense	probably benign	0.29
R2002:Xkr4	UTSW	1	3,741,318 (GRCm39)	missense	probably benign
R3896:Xkr4	UTSW	1	3,286,414 (GRCm39)	missense	probably damaging	0.99
R4006:Xkr4	UTSW	1	3,491,998 (GRCm39)	missense	probably benign	0.01
R4173:Xkr4	UTSW	1	3,286,711 (GRCm39)	missense	probably damaging	1.00
R4770:Xkr4	UTSW	1	3,286,714 (GRCm39)	missense	probably damaging	1.00
R4868:Xkr4	UTSW	1	3,287,074 (GRCm39)	missense	probably damaging	1.00
R5103:Xkr4	UTSW	1	3,740,911 (GRCm39)	missense	probably benign
R5548:Xkr4	UTSW	1	3,287,153 (GRCm39)	missense	probably damaging	1.00
R5602:Xkr4	UTSW	1	3,286,751 (GRCm39)	missense	probably benign	0.18
R5608:Xkr4	UTSW	1	3,741,603 (GRCm39)	start gained	probably benign
R5668:Xkr4	UTSW	1	3,741,258 (GRCm39)	missense	probably damaging	1.00
R5901:Xkr4	UTSW	1	3,286,901 (GRCm39)	missense	probably damaging	0.99
R6296:Xkr4	UTSW	1	3,286,793 (GRCm39)	missense	probably benign	0.01
R6302:Xkr4	UTSW	1	3,286,961 (GRCm39)	missense	probably damaging	0.99
R6326:Xkr4	UTSW	1	3,741,261 (GRCm39)	missense	possibly damaging	0.75
R6341:Xkr4	UTSW	1	3,741,001 (GRCm39)	missense	probably benign
R6911:Xkr4	UTSW	1	3,741,544 (GRCm39)	missense	possibly damaging	0.91
R7086:Xkr4	UTSW	1	3,287,185 (GRCm39)	missense	probably damaging	1.00
R7249:Xkr4	UTSW	1	3,287,033 (GRCm39)	missense	probably damaging	1.00
R7571:Xkr4	UTSW	1	3,740,911 (GRCm39)	missense	probably benign	0.00
R7881:Xkr4	UTSW	1	3,286,487 (GRCm39)	missense	probably damaging	1.00
R8332:Xkr4	UTSW	1	3,492,122 (GRCm39)	missense	probably damaging	1.00
R9076:Xkr4	UTSW	1	3,286,358 (GRCm39)	nonsense	probably null
R9134:Xkr4	UTSW	1	3,740,860 (GRCm39)	missense	probably benign
R9618:Xkr4	UTSW	1	3,741,201 (GRCm39)	missense	probably damaging	1.00
R9663:Xkr4	UTSW	1	3,286,519 (GRCm39)	missense	probably benign	0.01
Z1176:Xkr4	UTSW	1	3,741,205 (GRCm39)	missense	probably damaging	1.00
Z1176:Xkr4	UTSW	1	3,741,204 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GACTTGGCTTACTAGTCATTAGGAAAG -3'
(R):5'- TGATTTCAGCACCGAGGACAG -3'

Sequencing Primer
(F):5'- GATTTCATGCAAAAGTAGAACAGTG -3'
(R):5'- GAGGACAGCTCCACGACC -3'

Posted On

2020-09-15