Incidental Mutation 'R7952:Ccdc73'
| ID |
649599 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ccdc73
|
| Ensembl Gene |
ENSMUSG00000045106 |
| Gene Name |
coiled-coil domain containing 73 |
| Synonyms |
2210415I11Rik |
| MMRRC Submission |
045996-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.078)
|
| Stock # |
R7952 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
104716669-104830082 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (1 bp from exon) |
| DNA Base Change (assembly) |
G to A
at 104775801 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000115091
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000111114]
[ENSMUST00000127840]
[ENSMUST00000151764]
|
| AlphaFold |
Q8CDM4 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000111114
|
| SMART Domains |
Protein: ENSMUSP00000106743
Gene: ENSMUSG00000045106
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
|
Pfam:CCDC73
|
27 |
1061 |
N/A |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000127840
|
| SMART Domains |
Protein: ENSMUSP00000115091
Gene: ENSMUSG00000045106
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
|
coiled coil region
|
48 |
134 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000151764
|
| SMART Domains |
Protein: ENSMUSP00000120706
Gene: ENSMUSG00000045106
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
|
coiled coil region
|
48 |
134 |
N/A |
INTRINSIC |
|
coiled coil region
|
178 |
381 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.9712 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.2%
|
| Validation Efficiency |
98% (47/48) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 52 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acbd3 |
T |
C |
1: 180,579,903 (GRCm39) |
S516P |
possibly damaging |
Het |
| Adora1 |
A |
G |
1: 134,131,024 (GRCm39) |
S216P |
possibly damaging |
Het |
| Arhgap17 |
G |
T |
7: 122,885,914 (GRCm39) |
S739R |
probably benign |
Het |
| Bphl |
A |
G |
13: 34,230,780 (GRCm39) |
T75A |
probably benign |
Het |
| Cela3b |
T |
C |
4: 137,149,219 (GRCm39) |
I262V |
probably benign |
Het |
| Chpf |
T |
C |
1: 75,455,586 (GRCm39) |
N55S |
probably benign |
Het |
| Chst8 |
A |
G |
7: 34,374,919 (GRCm39) |
Y307H |
probably damaging |
Het |
| Cmtm2b |
G |
T |
8: 105,057,203 (GRCm39) |
E188* |
probably null |
Het |
| Cmya5 |
TTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAG |
TTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAGGCGCATGCTCCTCCTCTCTGTGGACTATGGGCTCAG |
13: 93,233,512 (GRCm39) |
|
probably benign |
Het |
| Cxadr |
C |
T |
16: 78,131,123 (GRCm39) |
T213M |
possibly damaging |
Het |
| D3Ertd751e |
T |
A |
3: 41,703,096 (GRCm39) |
|
probably null |
Het |
| Dhx32 |
T |
C |
7: 133,350,725 (GRCm39) |
Y115C |
probably benign |
Het |
| Dop1b |
C |
A |
16: 93,546,848 (GRCm39) |
T284K |
possibly damaging |
Het |
| Dync2h1 |
A |
G |
9: 7,129,802 (GRCm39) |
V1732A |
possibly damaging |
Het |
| Egf |
C |
T |
3: 129,533,645 (GRCm39) |
R65Q |
probably damaging |
Het |
| Fat4 |
T |
G |
3: 38,945,870 (GRCm39) |
S1588A |
probably damaging |
Het |
| Fmnl3 |
A |
G |
15: 99,220,518 (GRCm39) |
V588A |
probably damaging |
Het |
| Galnt3 |
C |
T |
2: 65,928,186 (GRCm39) |
E237K |
probably benign |
Het |
| Grik2 |
T |
C |
10: 49,298,633 (GRCm39) |
I363V |
probably benign |
Het |
| Grik3 |
C |
T |
4: 125,598,340 (GRCm39) |
T769I |
probably damaging |
Het |
| Hpd |
A |
T |
5: 123,316,327 (GRCm39) |
D141E |
possibly damaging |
Het |
| Hrc |
A |
T |
7: 44,985,692 (GRCm39) |
D281V |
probably damaging |
Het |
| Igfn1 |
A |
T |
1: 135,891,693 (GRCm39) |
I2274K |
probably damaging |
Het |
| Iqgap3 |
A |
G |
3: 88,005,677 (GRCm39) |
I502V |
probably benign |
Het |
| Kcnh8 |
A |
T |
17: 53,266,493 (GRCm39) |
Q835L |
probably benign |
Het |
| Kmt2d |
C |
T |
15: 98,748,649 (GRCm39) |
G2892R |
unknown |
Het |
| Lama4 |
T |
G |
10: 38,906,486 (GRCm39) |
I284S |
probably benign |
Het |
| Madd |
C |
A |
2: 90,992,886 (GRCm39) |
G1011V |
probably damaging |
Het |
| Mroh2b |
T |
C |
15: 4,980,693 (GRCm39) |
F1421L |
probably damaging |
Het |
| Nadk |
G |
T |
4: 155,661,524 (GRCm39) |
D17Y |
probably benign |
Het |
| Nedd9 |
C |
A |
13: 41,470,431 (GRCm39) |
D241Y |
probably damaging |
Het |
| Notch2 |
T |
C |
3: 98,007,552 (GRCm39) |
V434A |
probably benign |
Het |
| Ofcc1 |
C |
T |
13: 40,433,781 (GRCm39) |
R108Q |
probably benign |
Het |
| Or10al2 |
T |
C |
17: 37,983,708 (GRCm39) |
Y265H |
probably damaging |
Het |
| Or51g1 |
A |
G |
7: 102,633,721 (GRCm39) |
F217L |
probably benign |
Het |
| Pkd1l3 |
GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA |
GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA |
8: 110,350,827 (GRCm39) |
|
probably benign |
Het |
| Pramel41 |
T |
C |
5: 94,594,902 (GRCm39) |
V254A |
probably benign |
Het |
| Prss55 |
A |
G |
14: 64,313,132 (GRCm39) |
Y251H |
probably damaging |
Het |
| Rec8 |
T |
C |
14: 55,862,760 (GRCm39) |
V573A |
possibly damaging |
Het |
| Ryr2 |
T |
C |
13: 11,661,313 (GRCm39) |
|
probably null |
Het |
| Sec31b |
A |
G |
19: 44,508,979 (GRCm39) |
S667P |
probably benign |
Het |
| Smim17 |
A |
G |
7: 6,427,849 (GRCm39) |
D45G |
possibly damaging |
Het |
| Sspo |
A |
G |
6: 48,464,263 (GRCm39) |
T3906A |
probably damaging |
Het |
| Tanc2 |
G |
T |
11: 105,787,423 (GRCm39) |
G908W |
probably damaging |
Het |
| Tcf7l2 |
A |
T |
19: 55,886,989 (GRCm39) |
M1L |
probably benign |
Het |
| Tpx2 |
C |
T |
2: 152,735,514 (GRCm39) |
A714V |
probably damaging |
Het |
| Trgc4 |
T |
A |
13: 19,533,740 (GRCm39) |
S121R |
|
Het |
| Trmt1 |
G |
A |
8: 85,415,969 (GRCm39) |
R9H |
possibly damaging |
Het |
| Unc13a |
A |
T |
8: 72,111,131 (GRCm39) |
V360E |
possibly damaging |
Het |
| Vmn1r225 |
T |
A |
17: 20,722,589 (GRCm39) |
I10N |
probably damaging |
Het |
| Xkr4 |
A |
G |
1: 3,740,842 (GRCm39) |
S244P |
possibly damaging |
Het |
| Zkscan14 |
G |
T |
5: 145,132,708 (GRCm39) |
H274Q |
probably damaging |
Het |
|
| Other mutations in Ccdc73 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00679:Ccdc73
|
APN |
2 |
104,824,936 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01313:Ccdc73
|
APN |
2 |
104,737,972 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02016:Ccdc73
|
APN |
2 |
104,805,961 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL02179:Ccdc73
|
APN |
2 |
104,737,913 (GRCm39) |
missense |
probably damaging |
0.99 |
|
FR4304:Ccdc73
|
UTSW |
2 |
104,822,185 (GRCm39) |
unclassified |
probably benign |
|
|
FR4737:Ccdc73
|
UTSW |
2 |
104,822,185 (GRCm39) |
unclassified |
probably benign |
|
|
IGL03052:Ccdc73
|
UTSW |
2 |
104,782,281 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R0010:Ccdc73
|
UTSW |
2 |
104,811,332 (GRCm39) |
splice site |
probably benign |
|
|
R0040:Ccdc73
|
UTSW |
2 |
104,822,429 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0052:Ccdc73
|
UTSW |
2 |
104,759,915 (GRCm39) |
splice site |
probably benign |
|
|
R0360:Ccdc73
|
UTSW |
2 |
104,811,352 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0401:Ccdc73
|
UTSW |
2 |
104,821,634 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0715:Ccdc73
|
UTSW |
2 |
104,803,499 (GRCm39) |
splice site |
probably benign |
|
|
R0839:Ccdc73
|
UTSW |
2 |
104,821,442 (GRCm39) |
missense |
probably benign |
0.05 |
|
R1129:Ccdc73
|
UTSW |
2 |
104,822,535 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R1240:Ccdc73
|
UTSW |
2 |
104,821,906 (GRCm39) |
missense |
probably benign |
0.05 |
|
R1478:Ccdc73
|
UTSW |
2 |
104,745,012 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1478:Ccdc73
|
UTSW |
2 |
104,737,955 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R1695:Ccdc73
|
UTSW |
2 |
104,822,450 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1924:Ccdc73
|
UTSW |
2 |
104,822,637 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1950:Ccdc73
|
UTSW |
2 |
104,757,280 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1987:Ccdc73
|
UTSW |
2 |
104,829,504 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1987:Ccdc73
|
UTSW |
2 |
104,761,390 (GRCm39) |
nonsense |
probably null |
|
|
R2938:Ccdc73
|
UTSW |
2 |
104,805,980 (GRCm39) |
nonsense |
probably null |
|
|
R3420:Ccdc73
|
UTSW |
2 |
104,782,293 (GRCm39) |
splice site |
probably null |
|
|
R3420:Ccdc73
|
UTSW |
2 |
104,782,292 (GRCm39) |
missense |
probably null |
1.00 |
|
R3422:Ccdc73
|
UTSW |
2 |
104,782,293 (GRCm39) |
splice site |
probably null |
|
|
R3422:Ccdc73
|
UTSW |
2 |
104,782,292 (GRCm39) |
missense |
probably null |
1.00 |
|
R3522:Ccdc73
|
UTSW |
2 |
104,821,830 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3886:Ccdc73
|
UTSW |
2 |
104,821,688 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R4279:Ccdc73
|
UTSW |
2 |
104,815,355 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4791:Ccdc73
|
UTSW |
2 |
104,811,450 (GRCm39) |
splice site |
probably null |
|
|
R4793:Ccdc73
|
UTSW |
2 |
104,848,127 (GRCm39) |
splice site |
probably null |
|
|
R4939:Ccdc73
|
UTSW |
2 |
104,822,502 (GRCm39) |
splice site |
probably null |
|
|
R4950:Ccdc73
|
UTSW |
2 |
104,822,711 (GRCm39) |
missense |
probably benign |
|
|
R5093:Ccdc73
|
UTSW |
2 |
104,848,111 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5150:Ccdc73
|
UTSW |
2 |
104,822,384 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5381:Ccdc73
|
UTSW |
2 |
104,820,270 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5738:Ccdc73
|
UTSW |
2 |
104,761,331 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R6148:Ccdc73
|
UTSW |
2 |
104,822,482 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R6269:Ccdc73
|
UTSW |
2 |
104,737,978 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6738:Ccdc73
|
UTSW |
2 |
104,822,433 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6753:Ccdc73
|
UTSW |
2 |
104,821,869 (GRCm39) |
nonsense |
probably null |
|
|
R7062:Ccdc73
|
UTSW |
2 |
104,782,223 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7110:Ccdc73
|
UTSW |
2 |
104,803,569 (GRCm39) |
missense |
probably benign |
0.21 |
|
R7320:Ccdc73
|
UTSW |
2 |
104,829,521 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R7436:Ccdc73
|
UTSW |
2 |
104,782,214 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7530:Ccdc73
|
UTSW |
2 |
104,824,915 (GRCm39) |
missense |
|
|
|
R7747:Ccdc73
|
UTSW |
2 |
104,759,901 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8178:Ccdc73
|
UTSW |
2 |
104,821,557 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8824:Ccdc73
|
UTSW |
2 |
104,822,222 (GRCm39) |
missense |
possibly damaging |
0.74 |
|
R8927:Ccdc73
|
UTSW |
2 |
104,822,542 (GRCm39) |
missense |
|
|
|
R8928:Ccdc73
|
UTSW |
2 |
104,822,542 (GRCm39) |
missense |
|
|
|
R8945:Ccdc73
|
UTSW |
2 |
104,821,712 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9365:Ccdc73
|
UTSW |
2 |
104,738,011 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Ccdc73
|
UTSW |
2 |
104,822,584 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TTATAGGCACAAGACACCAAAATGG -3'
(R):5'- CAAAGGATGGACACTGCCAC -3'
Sequencing Primer
(F):5'- CACCAAAATGGCTTAAATGTACTGG -3'
(R):5'- TGGCAGCCCTTTAAACTG -3'
|
| Posted On |
2020-09-15 |
Incidental Mutation