Mutagenetix > Incidental Mutation

Incidental Mutation 'R7953:Vmn1r4'

649664

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r4

Ensembl Gene

ENSMUSG00000071893

Gene Name

vomeronasal 1 receptor 4

Synonyms

C230065D10Rik, V1rc21

MMRRC Submission

045997-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R7953 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

56901078-56934593 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 56933515 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 6 (N6K)

Ref Sequence

ENSEMBL: ENSMUSP00000135323 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000096612] [ENSMUST00000176838] [ENSMUST00000227073]

AlphaFold

Q8R2D3

Predicted Effect

probably benign
Transcript: ENSMUST00000096612
AA Change: N6K

PolyPhen 2 Score 0.375 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000094369
Gene: ENSMUSG00000071893
AA Change: N6K

Domain	Start	End	E-Value	Type
Pfam:V1R	28	293	3.8e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176838
AA Change: N6K

PolyPhen 2 Score 0.375 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000135323
Gene: ENSMUSG00000071893
AA Change: N6K

Domain	Start	End	E-Value	Type
Pfam:V1R	28	293	3.8e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227073
AA Change: N6K

PolyPhen 2 Score 0.375 (Sensitivity: 0.90; Specificity: 0.89)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (46/46)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933430I17Rik	A	G	4: 62,450,896 (GRCm39)	R120G	probably null	Het
Abcb9	T	C	5: 124,211,665 (GRCm39)	Y628C	probably damaging	Het
Adrm1b	A	T	3: 92,336,637 (GRCm39)	Y22N	probably benign	Het
Alpk2	C	T	18: 65,482,901 (GRCm39)	C369Y	probably damaging	Het
Caskin1	T	G	17: 24,723,195 (GRCm39)	L661R	probably damaging	Het
Cep83	A	C	10: 94,573,804 (GRCm39)	N231T	probably damaging	Het
Cfap44	G	A	16: 44,234,054 (GRCm39)	G338D	probably benign	Het
Chrna7	T	G	7: 62,753,541 (GRCm39)	K326T	possibly damaging	Het
Col4a4	A	G	1: 82,431,689 (GRCm39)	S1532P	unknown	Het
Cplx4	A	T	18: 66,090,190 (GRCm39)		probably null	Het
Csf1r	G	C	18: 61,257,947 (GRCm39)	G639R	probably damaging	Het
Dnajc27	T	C	12: 4,147,270 (GRCm39)	L151P	possibly damaging	Het
Epha5	A	G	5: 84,381,513 (GRCm39)	V446A	probably benign	Het
Esam	T	C	9: 37,448,317 (GRCm39)	V252A	probably damaging	Het
Flnc	C	A	6: 29,447,828 (GRCm39)	D1210E	probably damaging	Het
Fmn1	G	A	2: 113,426,689 (GRCm39)	M1233I	probably benign	Het
Fstl4	T	C	11: 52,891,050 (GRCm39)	S63P	probably benign	Het
Gas2l2	A	G	11: 83,314,070 (GRCm39)	V414A	possibly damaging	Het
Glra1	G	A	11: 55,424,688 (GRCm39)	P174L	probably damaging	Het
Gm16485	A	T	9: 8,972,196 (GRCm39)	N21Y	unknown	Het
Golga7	A	T	8: 23,746,731 (GRCm39)	C24S	possibly damaging	Het
Ints8	T	C	4: 11,227,128 (GRCm39)	T582A	probably benign	Het
Irx2	A	T	13: 72,777,343 (GRCm39)	T55S	probably benign	Het
Lce1j	A	T	3: 92,696,390 (GRCm39)	C129*	probably null	Het
Mettl25b	T	C	3: 87,834,955 (GRCm39)	N115S	possibly damaging	Het
Mocs1	G	A	17: 49,761,799 (GRCm39)	G631E	possibly damaging	Het
Mpi	A	T	9: 57,457,881 (GRCm39)	L107Q	probably damaging	Het
Msrb2	A	G	2: 19,399,166 (GRCm39)	*176W	probably null	Het
Myh13	T	A	11: 67,231,206 (GRCm39)	L401Q	probably damaging	Het
Npffr2	G	A	5: 89,730,513 (GRCm39)	V148I	probably benign	Het
Oas1a	T	C	5: 121,035,080 (GRCm39)	E360G	probably benign	Het
Or4k15c	A	T	14: 50,321,367 (GRCm39)	I257N	possibly damaging	Het
Or5b96	A	C	19: 12,867,095 (GRCm39)	V282G	probably damaging	Het
Or9g20	A	T	2: 85,630,239 (GRCm39)	I125N	probably damaging	Het
Pcdha2	A	G	18: 37,072,579 (GRCm39)	D70G	probably benign	Het
Phf11b	T	C	14: 59,568,722 (GRCm39)	S64G	probably benign	Het
Pira1	C	G	7: 3,740,319 (GRCm39)	A301P	probably damaging	Het
Plpp2	A	C	10: 79,366,374 (GRCm39)	L146R	possibly damaging	Het
Poc5	T	A	13: 96,539,408 (GRCm39)	N316K	probably benign	Het
Rad51ap2	A	T	12: 11,512,593 (GRCm39)	R947*	probably null	Het
Ralgapb	A	G	2: 158,307,803 (GRCm39)	H1037R	probably benign	Het
Rpl21	T	C	5: 146,772,702 (GRCm39)	V141A	probably benign	Het
Rufy3	C	A	5: 88,790,851 (GRCm39)	D517E	probably benign	Het
Scn7a	A	G	2: 66,587,670 (GRCm39)	V11A	possibly damaging	Het
Sipa1l1	A	C	12: 82,496,700 (GRCm39)	Q1744P	probably damaging	Het
Smc2	T	C	4: 52,470,911 (GRCm39)		probably null	Het
Sorcs3	T	A	19: 48,752,734 (GRCm39)	L843Q	possibly damaging	Het
Strc	A	T	2: 121,207,844 (GRCm39)	F509Y	probably damaging	Het
Tas2r117	A	C	6: 132,780,281 (GRCm39)	T140P	probably damaging	Het
Tnxb	T	A	17: 34,928,509 (GRCm39)	I2641N	possibly damaging	Het
Tnxb	C	A	17: 34,929,077 (GRCm39)	P2707T	probably benign	Het
Vmn1r91	T	A	7: 19,835,218 (GRCm39)	S46T	possibly damaging	Het
Zfp750	T	C	11: 121,402,706 (GRCm39)	T681A	probably benign	Het

Other mutations in Vmn1r4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02532:Vmn1r4	APN	6	56,934,135 (GRCm39)	missense	possibly damaging	0.85
IGL02709:Vmn1r4	APN	6	56,933,524 (GRCm39)	nonsense	probably null
IGL02947:Vmn1r4	APN	6	56,934,231 (GRCm39)	missense	probably benign	0.06
R0436:Vmn1r4	UTSW	6	56,933,947 (GRCm39)	missense	probably damaging	1.00
R0518:Vmn1r4	UTSW	6	56,933,883 (GRCm39)	missense	probably benign
R1639:Vmn1r4	UTSW	6	56,934,060 (GRCm39)	missense	probably damaging	0.99
R1667:Vmn1r4	UTSW	6	56,933,738 (GRCm39)	missense	probably damaging	0.98
R1776:Vmn1r4	UTSW	6	56,934,023 (GRCm39)	missense	probably benign	0.00
R1976:Vmn1r4	UTSW	6	56,933,723 (GRCm39)	missense	probably damaging	1.00
R3746:Vmn1r4	UTSW	6	56,934,116 (GRCm39)	missense	probably damaging	0.98
R4724:Vmn1r4	UTSW	6	56,934,349 (GRCm39)	missense	probably benign	0.04
R4814:Vmn1r4	UTSW	6	56,933,715 (GRCm39)	missense	possibly damaging	0.60
R5709:Vmn1r4	UTSW	6	56,933,604 (GRCm39)	missense	probably benign	0.22
R6468:Vmn1r4	UTSW	6	56,933,852 (GRCm39)	missense	probably benign	0.00
R6963:Vmn1r4	UTSW	6	56,933,769 (GRCm39)	missense	probably damaging	0.99
R7385:Vmn1r4	UTSW	6	56,933,721 (GRCm39)	missense	probably damaging	1.00
R8138:Vmn1r4	UTSW	6	56,934,391 (GRCm39)	makesense	probably null
R9039:Vmn1r4	UTSW	6	56,933,822 (GRCm39)	missense	possibly damaging	0.73
Z1088:Vmn1r4	UTSW	6	56,934,050 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- TAGGCTATGATGTACAATCTGGAAG -3'
(R):5'- AGTCATTCTCAGTGTTCAGTGATGC -3'

Sequencing Primer
(F):5'- TGATGTACAATCTGGAAGATGAAATG -3'
(R):5'- CTCAGTGTTCAGTGATGCAAGTAAG -3'

Posted On

2020-09-15