Mutagenetix > Incidental Mutations

Incidental Mutation 'R7961:Vmn1r28'

650108

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r28

Ensembl Gene

ENSMUSG00000115705

Gene Name

vomeronasal 1 receptor 28

Synonyms

V1rc25

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.099) question?

Stock #

R7961 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

58262037-58275639 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 58265193 bp

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 7 (V7A)

Ref Sequence

ENSEMBL: ENSMUSP00000153799 (fasta)

Predicted Effect

probably benign
Transcript: ENSMUST00000226813
AA Change: V7A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000227805
AA Change: V7A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000228678
AA Change: V7A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

94% (44/47)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	A	5: 8,828,870	N751K	possibly damaging	Het
Bckdha	G	A	7: 25,631,478	R288W	probably damaging	Het
C87414	T	C	5: 93,636,684	D307G	probably damaging	Het
Ccng1	G	A	11: 40,751,269	H229Y	probably benign	Het
Cenpn	C	A	8: 116,937,237	T256N	probably benign	Het
Ciart	A	G	3: 95,881,317	V70A	possibly damaging	Het
Clcc1	A	G	3: 108,661,458	N36S	probably damaging	Het
Cntnap1	G	A	11: 101,178,295	A192T	probably benign	Het
Dmrt1	T	A	19: 25,545,881	S199T	possibly damaging	Het
Dmrt3	T	C	19: 25,610,908	V37A	possibly damaging	Het
Dock1	T	A	7: 134,745,057	D239E	possibly damaging	Het
Dyrk3	A	G	1: 131,136,258		probably null	Het
Engase	A	G	11: 118,486,860	D571G	possibly damaging	Het
Gm45871	C	T	18: 90,591,759	H374Y	probably damaging	Het
Icam5	T	C	9: 21,038,755	V870A	possibly damaging	Het
Idh2	T	C	7: 80,098,253	H233R	probably benign	Het
Kcna5	A	G	6: 126,533,554	L537P	probably benign	Het
Krt71	T	C	15: 101,735,442	I454V	probably damaging	Het
Krtap5-4	C	T	7: 142,303,934	Q114*	probably null	Het
Loxl3	T	C	6: 83,050,809	F734S	possibly damaging	Het
Lpcat1	C	T	13: 73,511,379	T420I	probably damaging	Het
Mia2	T	A	12: 59,159,639		probably null	Het
Neurod4	A	T	10: 130,270,487	V306D	possibly damaging	Het
Nkiras2	A	T	11: 100,619,802		probably benign	Het
Nrp2	C	T	1: 62,745,408	R239C	probably damaging	Het
Ntrk3	T	A	7: 78,453,328	D408V	probably benign	Het
Nubpl	T	A	12: 52,181,297	L168*	probably null	Het
Odf1	A	G	15: 38,226,596	I247V	unknown	Het
Olfr1170	C	A	2: 88,224,689	M114I	possibly damaging	Het
Olfr1260	A	G	2: 89,977,787	Q3R	probably benign	Het
Olfr1298	G	A	2: 111,645,937	S20F	probably damaging	Het
Pcsk1	T	C	13: 75,126,839	S516P	probably benign	Het
Pikfyve	A	G	1: 65,255,134	D1411G	probably damaging	Het
Polm	T	C	11: 5,830,155	D294G	possibly damaging	Het
Ppcs	A	T	4: 119,419,065	S281T	probably benign	Het
Pspc1	G	A	14: 56,771,847	Q177*	probably null	Het
Rbm33	G	A	5: 28,394,608	G185R		Het
Satb2	A	G	1: 56,871,758	S243P	probably benign	Het
Serinc5	T	C	13: 92,661,191		probably null	Het
Sgsm1	T	C	5: 113,282,644	T292A	probably damaging	Het
Smad3	G	A	9: 63,650,282	R420C	possibly damaging	Het
Sntg1	C	T	1: 8,363,570	V486I	probably damaging	Het
Tep1	A	G	14: 50,824,230	S2610P	possibly damaging	Het
Tmem200a	A	G	10: 25,994,006	S122P	probably damaging	Het
Tnks2	T	A	19: 36,852,501	M194K	probably benign	Het
Trav14d-3-dv8	A	C	14: 53,078,767	Q28P	probably damaging	Het
Trpm5	T	C	7: 143,080,369	E700G	probably benign	Het
Ubqln3	T	A	7: 104,142,590	I98L	probably benign	Het
Usp25	A	G	16: 77,059,262	I248V	probably damaging	Het
Zfp60	G	A	7: 27,748,456	G183D	probably benign	Het

Other mutations in Vmn1r28

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01365:Vmn1r28	APN	6	58265191	missense	possibly damaging	0.76
IGL01712:Vmn1r28	APN	6	58265408	missense	probably benign	0.00
IGL01788:Vmn1r28	APN	6	58265537	missense	probably benign	0.00
IGL02629:Vmn1r28	APN	6	58265816	missense	probably benign	0.00
R0001:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0009:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0040:Vmn1r28	UTSW	6	58265894	missense	probably damaging	1.00
R0078:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0079:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0081:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0164:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0164:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0165:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0166:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0167:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0172:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0173:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0284:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0288:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R0704:Vmn1r28	UTSW	6	58265717	missense	probably benign	0.00
R1143:Vmn1r28	UTSW	6	58265742	missense	probably benign	0.00
R1225:Vmn1r28	UTSW	6	58265966	nonsense	probably null
R1464:Vmn1r28	UTSW	6	58265232	missense	probably benign	0.05
R1464:Vmn1r28	UTSW	6	58265232	missense	probably benign	0.05
R1836:Vmn1r28	UTSW	6	58265252	missense	probably damaging	0.98
R1882:Vmn1r28	UTSW	6	58265978	missense	probably benign
R1905:Vmn1r28	UTSW	6	58265927	missense	probably benign	0.01
R4912:Vmn1r28	UTSW	6	58265540	missense	possibly damaging	0.86
R5071:Vmn1r28	UTSW	6	58265909	missense	probably benign	0.25
R5113:Vmn1r28	UTSW	6	58265858	missense	probably benign	0.12
R5261:Vmn1r28	UTSW	6	58265539	missense	probably benign	0.02
R5265:Vmn1r28	UTSW	6	58265964	missense	probably damaging	0.98
R5839:Vmn1r28	UTSW	6	58265295	missense	possibly damaging	0.94
R6180:Vmn1r28	UTSW	6	58265491	missense	probably damaging	0.99
R6643:Vmn1r28	UTSW	6	58265960	missense	probably benign	0.17
R6884:Vmn1r28	UTSW	6	58265648	missense	probably benign	0.03
R7393:Vmn1r28	UTSW	6	58265589	missense	possibly damaging	0.81
R7471:Vmn1r28	UTSW	6	58265865	nonsense	probably null
R7738:Vmn1r28	UTSW	6	58266054	missense	probably benign	0.00
R8009:Vmn1r28	UTSW	6	58265193	missense	probably benign
R8156:Vmn1r28	UTSW	6	58265198	missense	probably damaging	1.00
R8167:Vmn1r28	UTSW	6	58266067	missense	noncoding transcript

Predicted Primers

PCR Primer
(F):5'- AACTCCAGAGAAAGATGCCACTTG -3'
(R):5'- TGTTTGCAAGCAAGTTATCTCC -3'

Sequencing Primer
(F):5'- GCCACTTGATCATTTAGAAGATGTG -3'
(R):5'- CAAGCAAGTTATCTCCTTCACTGAGG -3'

Posted On

2020-09-15