Incidental Mutation 'R7966:Prpf4b'
ID 650390
Institutional Source Beutler Lab
Gene Symbol Prpf4b
Ensembl Gene ENSMUSG00000021413
Gene Name pre-mRNA processing factor 4B
Synonyms Prpk, Prp4k, Prp4
MMRRC Submission 046009-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7966 (G1)
Quality Score 225.009
Status Validated
Chromosome 13
Chromosomal Location 35059285-35090047 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 35085428 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 958 (D958G)
Ref Sequence ENSEMBL: ENSMUSP00000077019 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000077853] [ENSMUST00000222509]
AlphaFold Q61136
Predicted Effect probably damaging
Transcript: ENSMUST00000077853
AA Change: D958G

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000077019
Gene: ENSMUSG00000021413
AA Change: D958G

DomainStartEndE-ValueType
low complexity region 40 62 N/A INTRINSIC
low complexity region 68 80 N/A INTRINSIC
coiled coil region 102 123 N/A INTRINSIC
low complexity region 142 150 N/A INTRINSIC
low complexity region 156 170 N/A INTRINSIC
low complexity region 178 197 N/A INTRINSIC
low complexity region 210 233 N/A INTRINSIC
low complexity region 238 249 N/A INTRINSIC
low complexity region 284 294 N/A INTRINSIC
low complexity region 299 324 N/A INTRINSIC
low complexity region 340 360 N/A INTRINSIC
low complexity region 390 417 N/A INTRINSIC
low complexity region 435 497 N/A INTRINSIC
low complexity region 521 535 N/A INTRINSIC
low complexity region 562 581 N/A INTRINSIC
S_TKc 687 1003 4.99e-74 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000220965
Predicted Effect probably benign
Transcript: ENSMUST00000221077
Predicted Effect probably damaging
Transcript: ENSMUST00000222509
AA Change: D958G

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.2%
Validation Efficiency 98% (52/53)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pre-mRNA splicing occurs in two sequential transesterification steps, and the protein encoded by this gene is thought to be involved in pre-mRNA splicing and in signal transduction. This protein belongs to a kinase family that includes serine/arginine-rich protein-specific kinases and cyclin-dependent kinases (CDKs). This protein is regarded as a CDK-like kinase (Clk) with homology to mitogen-activated protein kinases (MAPKs). [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2700049A03Rik A T 12: 71,219,903 (GRCm39) I817L probably benign Het
Adcy8 A T 15: 64,573,939 (GRCm39) W1055R probably damaging Het
Anks4b A G 7: 119,781,923 (GRCm39) E318G probably benign Het
Arid3a A G 10: 79,767,889 (GRCm39) T229A probably benign Het
Cckar T C 5: 53,858,580 (GRCm39) K247E possibly damaging Het
Cfap52 A T 11: 67,844,571 (GRCm39) probably null Het
Ckap4 A G 10: 84,363,449 (GRCm39) V538A probably damaging Het
Cped1 T C 6: 22,059,953 (GRCm39) probably null Het
Ctsf T G 19: 4,906,567 (GRCm39) F165V probably damaging Het
Cyp4v3 G T 8: 45,785,954 (GRCm39) A21E probably benign Het
Cytip T C 2: 58,037,944 (GRCm39) E140G probably damaging Het
D130043K22Rik A C 13: 25,077,406 (GRCm39) Q1013P probably damaging Het
Dpp6 A G 5: 27,928,370 (GRCm39) M763V probably benign Het
Eps15 T A 4: 109,178,340 (GRCm39) Y193N probably damaging Het
Ghrhr T C 6: 55,356,083 (GRCm39) W59R probably damaging Het
Hdac4 A G 1: 91,861,402 (GRCm39) V1056A possibly damaging Het
Ipcef1 T C 10: 6,850,668 (GRCm39) T312A probably damaging Het
Itpr3 T C 17: 27,331,002 (GRCm39) probably null Het
Kif6 A G 17: 49,993,453 (GRCm39) I182V probably damaging Het
Lcn3 A G 2: 25,656,389 (GRCm39) K90E probably damaging Het
Lig3 T C 11: 82,681,342 (GRCm39) S446P probably damaging Het
Ncln G A 10: 81,326,103 (GRCm39) Q283* probably null Het
Nlrp4c A G 7: 6,069,322 (GRCm39) T408A probably damaging Het
Oas1h T C 5: 121,009,962 (GRCm39) F346L probably damaging Het
Olig2 AGCCGCCGCCGCCGCCGCAGCCGCCGCCGCCGC AGCCGCCGCCGCCGCAGCCGCCGCCGCCGC 16: 91,023,962 (GRCm39) probably benign Het
Or2ad1 A T 13: 21,326,356 (GRCm39) Y290* probably null Het
Or52b4 T C 7: 102,184,623 (GRCm39) I223T probably damaging Het
Or52s1b A T 7: 102,822,062 (GRCm39) F261I probably damaging Het
Or8b55 A G 9: 38,727,536 (GRCm39) I246V probably benign Het
Pdcd1 A T 1: 93,969,186 (GRCm39) V44E probably damaging Het
Prdm13 A T 4: 21,679,932 (GRCm39) I186N unknown Het
Prss59 A T 6: 40,903,022 (GRCm39) Y117N probably benign Het
Prune2 A G 19: 17,156,223 (GRCm39) N2792S probably damaging Het
Robo1 T A 16: 72,780,760 (GRCm39) I830N possibly damaging Het
Scaper A G 9: 55,669,611 (GRCm39) V355A probably damaging Het
Scn3b C T 9: 40,193,846 (GRCm39) A191V probably benign Het
Slc13a3 G C 2: 165,272,155 (GRCm39) S296C probably benign Het
Slc6a16 T A 7: 44,917,477 (GRCm39) I445N possibly damaging Het
Snrnp35 A G 5: 124,628,565 (GRCm39) Y126C possibly damaging Het
Spock2 A G 10: 59,957,554 (GRCm39) H98R possibly damaging Het
Sptssb A T 3: 69,728,286 (GRCm39) Y50* probably null Het
Syne1 A G 10: 5,066,965 (GRCm39) probably null Het
Tcf21 T C 10: 22,695,706 (GRCm39) T33A probably benign Het
Tecta A G 9: 42,306,258 (GRCm39) F57L probably damaging Het
Tgs1 C A 4: 3,586,215 (GRCm39) P364H probably benign Het
Tmem242 A G 17: 5,461,711 (GRCm39) I119T probably benign Het
Ttll3 CAAAGTAA CAAAGTAAAGTAA 6: 113,376,118 (GRCm39) probably null Het
Vmn2r3 T A 3: 64,186,235 (GRCm39) N150I probably damaging Het
Vmn2r69 A G 7: 85,060,762 (GRCm39) I274T possibly damaging Het
Vwf T A 6: 125,616,304 (GRCm39) L1206* probably null Het
Zfp157 T A 5: 138,445,833 (GRCm39) W63R probably benign Het
Zfp455 T C 13: 67,347,302 (GRCm39) Y10H probably benign Het
Zfp654 T C 16: 64,605,239 (GRCm39) T447A probably damaging Het
Zhx2 T C 15: 57,685,063 (GRCm39) I144T probably damaging Het
Other mutations in Prpf4b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00332:Prpf4b APN 13 35,067,890 (GRCm39) missense probably benign 0.23
IGL00639:Prpf4b APN 13 35,083,156 (GRCm39) missense possibly damaging 0.70
IGL00901:Prpf4b APN 13 35,078,465 (GRCm39) missense probably damaging 1.00
IGL01301:Prpf4b APN 13 35,068,274 (GRCm39) missense probably benign 0.23
IGL02027:Prpf4b APN 13 35,073,554 (GRCm39) missense probably benign 0.35
IGL02111:Prpf4b APN 13 35,067,944 (GRCm39) missense probably benign 0.23
IGL02256:Prpf4b APN 13 35,083,861 (GRCm39) missense probably damaging 0.98
IGL02590:Prpf4b APN 13 35,072,129 (GRCm39) unclassified probably benign
IGL03389:Prpf4b APN 13 35,084,439 (GRCm39) splice site probably benign
IGL03411:Prpf4b APN 13 35,079,342 (GRCm39) missense probably damaging 1.00
ANU18:Prpf4b UTSW 13 35,068,274 (GRCm39) missense probably benign 0.23
PIT4260001:Prpf4b UTSW 13 35,068,274 (GRCm39) missense probably benign 0.23
PIT4696001:Prpf4b UTSW 13 35,083,825 (GRCm39) missense probably benign 0.01
R0114:Prpf4b UTSW 13 35,074,471 (GRCm39) splice site probably benign
R0157:Prpf4b UTSW 13 35,068,014 (GRCm39) unclassified probably benign
R1551:Prpf4b UTSW 13 35,078,426 (GRCm39) missense possibly damaging 0.91
R1587:Prpf4b UTSW 13 35,076,133 (GRCm39) missense probably benign 0.09
R2105:Prpf4b UTSW 13 35,068,214 (GRCm39) unclassified probably benign
R2152:Prpf4b UTSW 13 35,084,402 (GRCm39) missense probably benign 0.04
R2432:Prpf4b UTSW 13 35,067,324 (GRCm39) unclassified probably benign
R3802:Prpf4b UTSW 13 35,067,665 (GRCm39) unclassified probably benign
R3803:Prpf4b UTSW 13 35,067,665 (GRCm39) unclassified probably benign
R3804:Prpf4b UTSW 13 35,067,665 (GRCm39) unclassified probably benign
R3982:Prpf4b UTSW 13 35,068,196 (GRCm39) unclassified probably benign
R4603:Prpf4b UTSW 13 35,072,147 (GRCm39) unclassified probably benign
R4633:Prpf4b UTSW 13 35,084,425 (GRCm39) missense probably damaging 1.00
R4649:Prpf4b UTSW 13 35,083,954 (GRCm39) missense probably benign 0.06
R4651:Prpf4b UTSW 13 35,083,954 (GRCm39) missense probably benign 0.06
R4653:Prpf4b UTSW 13 35,083,954 (GRCm39) missense probably benign 0.06
R5022:Prpf4b UTSW 13 35,067,582 (GRCm39) unclassified probably benign
R5028:Prpf4b UTSW 13 35,083,958 (GRCm39) missense probably damaging 1.00
R5232:Prpf4b UTSW 13 35,067,573 (GRCm39) unclassified probably benign
R5313:Prpf4b UTSW 13 35,078,532 (GRCm39) missense probably damaging 1.00
R5440:Prpf4b UTSW 13 35,068,076 (GRCm39) unclassified probably benign
R5511:Prpf4b UTSW 13 35,068,037 (GRCm39) unclassified probably benign
R5863:Prpf4b UTSW 13 35,083,111 (GRCm39) missense possibly damaging 0.51
R5981:Prpf4b UTSW 13 35,070,693 (GRCm39) missense probably benign 0.23
R6360:Prpf4b UTSW 13 35,085,416 (GRCm39) missense probably damaging 0.99
R6398:Prpf4b UTSW 13 35,084,354 (GRCm39) missense probably damaging 1.00
R6556:Prpf4b UTSW 13 35,080,015 (GRCm39) missense probably damaging 0.98
R6880:Prpf4b UTSW 13 35,078,436 (GRCm39) missense possibly damaging 0.69
R7133:Prpf4b UTSW 13 35,085,477 (GRCm39) missense probably benign 0.02
R7148:Prpf4b UTSW 13 35,078,455 (GRCm39) missense probably benign 0.04
R7208:Prpf4b UTSW 13 35,067,994 (GRCm39) missense unknown
R8241:Prpf4b UTSW 13 35,079,974 (GRCm39) missense probably damaging 1.00
R8298:Prpf4b UTSW 13 35,072,166 (GRCm39) missense unknown
R9609:Prpf4b UTSW 13 35,068,032 (GRCm39) missense unknown
R9710:Prpf4b UTSW 13 35,083,870 (GRCm39) missense probably damaging 1.00
RF002:Prpf4b UTSW 13 35,068,219 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- TGCTCACTGCGTGTTCATGG -3'
(R):5'- GCTTCCTCAAATTTGCTGCAG -3'

Sequencing Primer
(F):5'- ATTCTCTTTGAAAAGATGTGGAGG -3'
(R):5'- ACTGCTGTGAAATTTCTTCAGTC -3'
Posted On 2020-09-15