Incidental Mutation 'R7974:Vmn2r107'
ID |
650806 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r107
|
Ensembl Gene |
ENSMUSG00000056910 |
Gene Name |
vomeronasal 2, receptor 107 |
Synonyms |
V2r6 |
MMRRC Submission |
046017-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.156)
|
Stock # |
R7974 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
20565687-20596034 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to G
at 20577270 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Proline to Alanine
at position 423
(P423A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000048706
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000042090]
|
AlphaFold |
E9PZJ7 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000042090
AA Change: P423A
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
SMART Domains |
Protein: ENSMUSP00000048706 Gene: ENSMUSG00000056910 AA Change: P423A
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
83 |
466 |
3.6e-40 |
PFAM |
Pfam:NCD3G
|
509 |
562 |
5.1e-21 |
PFAM |
Pfam:7tm_3
|
593 |
830 |
8e-51 |
PFAM |
|
Meta Mutation Damage Score |
0.0846 |
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
Validation Efficiency |
100% (64/64) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 69 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Ablim1 |
C |
T |
19: 57,033,405 (GRCm39) |
|
probably null |
Het |
Adamts19 |
A |
T |
18: 59,144,094 (GRCm39) |
Q892L |
possibly damaging |
Het |
Adamts9 |
A |
G |
6: 92,886,668 (GRCm39) |
|
probably null |
Het |
Aftph |
T |
C |
11: 20,648,233 (GRCm39) |
*686W |
probably null |
Het |
AI661453 |
T |
C |
17: 47,777,006 (GRCm39) |
L244P |
unknown |
Het |
Ankar |
C |
A |
1: 72,738,138 (GRCm39) |
E15* |
probably null |
Het |
Ankrd39 |
A |
G |
1: 36,585,999 (GRCm39) |
|
probably benign |
Het |
Arsi |
A |
G |
18: 61,045,478 (GRCm39) |
D56G |
probably damaging |
Het |
Blmh |
T |
C |
11: 76,856,729 (GRCm39) |
I245T |
possibly damaging |
Het |
Ccr6 |
T |
C |
17: 8,475,056 (GRCm39) |
F87S |
probably damaging |
Het |
Cdc42ep2 |
T |
C |
19: 5,968,523 (GRCm39) |
K61E |
probably damaging |
Het |
Celsr1 |
C |
T |
15: 85,915,231 (GRCm39) |
G914D |
probably damaging |
Het |
Cep126 |
T |
A |
9: 8,120,764 (GRCm39) |
K86N |
probably benign |
Het |
Cfap70 |
A |
T |
14: 20,470,818 (GRCm39) |
F532I |
probably damaging |
Het |
Cpsf3 |
T |
A |
12: 21,358,006 (GRCm39) |
L506Q |
probably damaging |
Het |
Dct |
A |
C |
14: 118,277,067 (GRCm39) |
I273S |
probably damaging |
Het |
Dsel |
T |
C |
1: 111,788,229 (GRCm39) |
I769V |
probably benign |
Het |
Dus2 |
G |
A |
8: 106,762,652 (GRCm39) |
E138K |
probably benign |
Het |
Emsy |
A |
G |
7: 98,279,425 (GRCm39) |
S305P |
possibly damaging |
Het |
Erp27 |
A |
T |
6: 136,885,063 (GRCm39) |
V245D |
probably damaging |
Het |
Fez1 |
C |
A |
9: 36,755,244 (GRCm39) |
T81K |
probably damaging |
Het |
Gli3 |
A |
C |
13: 15,900,841 (GRCm39) |
Q1409H |
probably benign |
Het |
Hdac9 |
T |
C |
12: 34,353,219 (GRCm39) |
S664G |
possibly damaging |
Het |
Hibadh |
A |
G |
6: 52,534,880 (GRCm39) |
S167P |
probably benign |
Het |
Hsdl1 |
A |
G |
8: 120,293,072 (GRCm39) |
V121A |
probably benign |
Het |
Ift70a1 |
T |
C |
2: 75,810,688 (GRCm39) |
H465R |
probably damaging |
Het |
Ighv1-18 |
A |
C |
12: 114,646,669 (GRCm39) |
I6S |
possibly damaging |
Het |
Iqcm |
T |
A |
8: 76,281,520 (GRCm39) |
M1K |
probably null |
Het |
Itch |
T |
C |
2: 155,034,079 (GRCm39) |
F417S |
probably damaging |
Het |
Itpr1 |
C |
T |
6: 108,500,366 (GRCm39) |
T2653I |
possibly damaging |
Het |
Kank1 |
T |
G |
19: 25,401,584 (GRCm39) |
Y1064D |
probably damaging |
Het |
Kmt2c |
T |
C |
5: 25,505,561 (GRCm39) |
Q3249R |
probably damaging |
Het |
Lefty1 |
T |
C |
1: 180,765,385 (GRCm39) |
C318R |
probably damaging |
Het |
Lmbr1l |
C |
T |
15: 98,809,500 (GRCm39) |
V147I |
probably benign |
Het |
Meig1 |
C |
A |
2: 3,412,911 (GRCm39) |
E37* |
probably null |
Het |
Mpp3 |
A |
G |
11: 101,899,180 (GRCm39) |
|
probably null |
Het |
Muc17 |
T |
C |
5: 137,175,664 (GRCm39) |
N2S |
|
Het |
Mup7 |
T |
C |
4: 60,067,518 (GRCm39) |
E199G |
possibly damaging |
Het |
Nol4 |
G |
C |
18: 22,852,082 (GRCm39) |
Y275* |
probably null |
Het |
Nrxn1 |
G |
A |
17: 91,008,207 (GRCm39) |
P429S |
probably damaging |
Het |
Or14j8 |
T |
C |
17: 38,263,672 (GRCm39) |
Y81C |
probably damaging |
Het |
Pfkl |
A |
T |
10: 77,829,996 (GRCm39) |
F367L |
probably damaging |
Het |
Pik3cg |
T |
C |
12: 32,254,031 (GRCm39) |
E652G |
probably benign |
Het |
Prkag3 |
A |
G |
1: 74,783,980 (GRCm39) |
I301T |
probably benign |
Het |
Rcn1 |
G |
A |
2: 105,224,055 (GRCm39) |
P163L |
probably benign |
Het |
Slc1a7 |
G |
A |
4: 107,869,473 (GRCm39) |
V513M |
probably benign |
Het |
Slc37a2 |
A |
T |
9: 37,150,421 (GRCm39) |
|
probably null |
Het |
Slc9b1 |
C |
T |
3: 135,099,791 (GRCm39) |
T437I |
possibly damaging |
Het |
Smap1 |
T |
G |
1: 23,888,522 (GRCm39) |
T248P |
probably benign |
Het |
Smpd3 |
A |
C |
8: 106,982,254 (GRCm39) |
C617G |
probably benign |
Het |
Spata20 |
T |
C |
11: 94,374,966 (GRCm39) |
N212S |
possibly damaging |
Het |
Sphkap |
A |
C |
1: 83,256,683 (GRCm39) |
C355W |
probably damaging |
Het |
Spopfm2 |
T |
C |
3: 94,082,848 (GRCm39) |
K321R |
probably benign |
Het |
Spsb1 |
T |
A |
4: 149,991,566 (GRCm39) |
M1L |
probably damaging |
Het |
Srebf2 |
C |
T |
15: 82,062,966 (GRCm39) |
R468C |
probably damaging |
Het |
Stxbp5 |
A |
C |
10: 9,646,439 (GRCm39) |
|
probably null |
Het |
Taar5 |
G |
C |
10: 23,847,120 (GRCm39) |
D173H |
possibly damaging |
Het |
Tfrc |
A |
G |
16: 32,440,101 (GRCm39) |
D438G |
probably null |
Het |
Tinag |
A |
T |
9: 76,907,131 (GRCm39) |
I368K |
probably benign |
Het |
Tm9sf1 |
A |
G |
14: 55,873,906 (GRCm39) |
W531R |
probably damaging |
Het |
Tnc |
G |
T |
4: 63,918,961 (GRCm39) |
P1154Q |
possibly damaging |
Het |
Toporsl |
A |
G |
4: 52,611,645 (GRCm39) |
R513G |
probably damaging |
Het |
Vat1 |
A |
G |
11: 101,356,956 (GRCm39) |
S2P |
probably benign |
Het |
Vmn2r2 |
T |
A |
3: 64,024,808 (GRCm39) |
E591V |
probably damaging |
Het |
Vmn2r62 |
T |
A |
7: 42,437,281 (GRCm39) |
Y401F |
probably damaging |
Het |
Vmn2r62 |
G |
A |
7: 42,414,031 (GRCm39) |
T804I |
probably damaging |
Het |
Vmn2r89 |
A |
T |
14: 51,693,459 (GRCm39) |
I270F |
probably damaging |
Het |
Zfp418 |
T |
C |
7: 7,185,167 (GRCm39) |
F377L |
possibly damaging |
Het |
Zkscan5 |
T |
C |
5: 145,144,502 (GRCm39) |
S182P |
unknown |
Het |
|
Other mutations in Vmn2r107 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01402:Vmn2r107
|
APN |
17 |
20,596,009 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01768:Vmn2r107
|
APN |
17 |
20,565,868 (GRCm39) |
missense |
probably benign |
0.32 |
IGL02086:Vmn2r107
|
APN |
17 |
20,578,062 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02136:Vmn2r107
|
APN |
17 |
20,595,168 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02266:Vmn2r107
|
APN |
17 |
20,577,039 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02285:Vmn2r107
|
APN |
17 |
20,595,823 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02724:Vmn2r107
|
APN |
17 |
20,577,006 (GRCm39) |
missense |
possibly damaging |
0.49 |
IGL02998:Vmn2r107
|
APN |
17 |
20,578,017 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03089:Vmn2r107
|
APN |
17 |
20,595,974 (GRCm39) |
missense |
probably benign |
0.05 |
IGL03284:Vmn2r107
|
APN |
17 |
20,577,173 (GRCm39) |
missense |
probably benign |
0.07 |
IGL03307:Vmn2r107
|
APN |
17 |
20,577,038 (GRCm39) |
missense |
probably benign |
0.09 |
IGL03399:Vmn2r107
|
APN |
17 |
20,578,220 (GRCm39) |
splice site |
probably benign |
|
3-1:Vmn2r107
|
UTSW |
17 |
20,565,766 (GRCm39) |
missense |
probably benign |
|
BB006:Vmn2r107
|
UTSW |
17 |
20,565,706 (GRCm39) |
missense |
probably null |
0.96 |
BB016:Vmn2r107
|
UTSW |
17 |
20,565,706 (GRCm39) |
missense |
probably null |
0.96 |
R0285:Vmn2r107
|
UTSW |
17 |
20,565,873 (GRCm39) |
missense |
probably benign |
0.00 |
R0455:Vmn2r107
|
UTSW |
17 |
20,595,085 (GRCm39) |
splice site |
probably benign |
|
R0497:Vmn2r107
|
UTSW |
17 |
20,595,394 (GRCm39) |
missense |
probably damaging |
1.00 |
R0506:Vmn2r107
|
UTSW |
17 |
20,578,021 (GRCm39) |
missense |
probably benign |
|
R0621:Vmn2r107
|
UTSW |
17 |
20,595,252 (GRCm39) |
missense |
probably benign |
0.01 |
R0667:Vmn2r107
|
UTSW |
17 |
20,575,916 (GRCm39) |
missense |
possibly damaging |
0.91 |
R1118:Vmn2r107
|
UTSW |
17 |
20,576,860 (GRCm39) |
missense |
probably benign |
0.03 |
R1204:Vmn2r107
|
UTSW |
17 |
20,578,031 (GRCm39) |
missense |
probably benign |
|
R1237:Vmn2r107
|
UTSW |
17 |
20,576,947 (GRCm39) |
nonsense |
probably null |
|
R1485:Vmn2r107
|
UTSW |
17 |
20,595,109 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1783:Vmn2r107
|
UTSW |
17 |
20,576,775 (GRCm39) |
missense |
possibly damaging |
0.51 |
R1873:Vmn2r107
|
UTSW |
17 |
20,565,840 (GRCm39) |
missense |
probably benign |
0.10 |
R1974:Vmn2r107
|
UTSW |
17 |
20,575,879 (GRCm39) |
splice site |
probably null |
|
R2009:Vmn2r107
|
UTSW |
17 |
20,595,729 (GRCm39) |
missense |
probably benign |
0.01 |
R2029:Vmn2r107
|
UTSW |
17 |
20,595,549 (GRCm39) |
missense |
probably benign |
0.01 |
R2164:Vmn2r107
|
UTSW |
17 |
20,595,904 (GRCm39) |
missense |
probably damaging |
1.00 |
R2269:Vmn2r107
|
UTSW |
17 |
20,595,817 (GRCm39) |
missense |
possibly damaging |
0.58 |
R3087:Vmn2r107
|
UTSW |
17 |
20,580,607 (GRCm39) |
missense |
probably benign |
0.03 |
R3740:Vmn2r107
|
UTSW |
17 |
20,595,151 (GRCm39) |
missense |
probably benign |
0.00 |
R3961:Vmn2r107
|
UTSW |
17 |
20,595,717 (GRCm39) |
missense |
probably damaging |
1.00 |
R4031:Vmn2r107
|
UTSW |
17 |
20,595,483 (GRCm39) |
missense |
probably benign |
0.00 |
R4270:Vmn2r107
|
UTSW |
17 |
20,576,041 (GRCm39) |
missense |
probably benign |
|
R4963:Vmn2r107
|
UTSW |
17 |
20,595,403 (GRCm39) |
missense |
probably damaging |
1.00 |
R5121:Vmn2r107
|
UTSW |
17 |
20,576,015 (GRCm39) |
missense |
probably benign |
0.01 |
R5640:Vmn2r107
|
UTSW |
17 |
20,595,426 (GRCm39) |
missense |
probably damaging |
1.00 |
R6007:Vmn2r107
|
UTSW |
17 |
20,595,316 (GRCm39) |
missense |
probably benign |
0.19 |
R6238:Vmn2r107
|
UTSW |
17 |
20,565,849 (GRCm39) |
missense |
probably benign |
0.43 |
R6298:Vmn2r107
|
UTSW |
17 |
20,576,044 (GRCm39) |
missense |
probably benign |
0.00 |
R6467:Vmn2r107
|
UTSW |
17 |
20,595,939 (GRCm39) |
missense |
probably damaging |
0.99 |
R6726:Vmn2r107
|
UTSW |
17 |
20,595,637 (GRCm39) |
missense |
probably damaging |
0.96 |
R6782:Vmn2r107
|
UTSW |
17 |
20,577,141 (GRCm39) |
missense |
probably damaging |
1.00 |
R7299:Vmn2r107
|
UTSW |
17 |
20,565,878 (GRCm39) |
missense |
probably benign |
0.01 |
R7301:Vmn2r107
|
UTSW |
17 |
20,565,878 (GRCm39) |
missense |
probably benign |
0.01 |
R7375:Vmn2r107
|
UTSW |
17 |
20,576,138 (GRCm39) |
missense |
probably benign |
|
R7448:Vmn2r107
|
UTSW |
17 |
20,595,994 (GRCm39) |
missense |
probably benign |
0.00 |
R7495:Vmn2r107
|
UTSW |
17 |
20,595,271 (GRCm39) |
missense |
possibly damaging |
0.71 |
R7589:Vmn2r107
|
UTSW |
17 |
20,595,634 (GRCm39) |
missense |
probably benign |
0.05 |
R7594:Vmn2r107
|
UTSW |
17 |
20,580,635 (GRCm39) |
missense |
probably benign |
0.03 |
R7678:Vmn2r107
|
UTSW |
17 |
20,576,901 (GRCm39) |
missense |
probably benign |
0.01 |
R7929:Vmn2r107
|
UTSW |
17 |
20,565,706 (GRCm39) |
missense |
probably null |
0.96 |
R8040:Vmn2r107
|
UTSW |
17 |
20,595,808 (GRCm39) |
missense |
probably damaging |
1.00 |
R8263:Vmn2r107
|
UTSW |
17 |
20,580,614 (GRCm39) |
missense |
probably damaging |
1.00 |
R8426:Vmn2r107
|
UTSW |
17 |
20,577,239 (GRCm39) |
missense |
possibly damaging |
0.91 |
R9175:Vmn2r107
|
UTSW |
17 |
20,577,051 (GRCm39) |
missense |
possibly damaging |
0.79 |
R9537:Vmn2r107
|
UTSW |
17 |
20,595,149 (GRCm39) |
missense |
probably benign |
0.00 |
R9642:Vmn2r107
|
UTSW |
17 |
20,580,661 (GRCm39) |
missense |
probably damaging |
1.00 |
R9711:Vmn2r107
|
UTSW |
17 |
20,577,262 (GRCm39) |
missense |
probably damaging |
1.00 |
X0022:Vmn2r107
|
UTSW |
17 |
20,577,230 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
Predicted Primers |
PCR Primer
(F):5'- CTCCCTAAGATGTGGTATTTGTTC -3'
(R):5'- ATTACTCCTGGTATGTTGAATGCC -3'
Sequencing Primer
(F):5'- ATGTGGTATTTGTTCTTCATGTGCTC -3'
(R):5'- GGTATGTTGAATGCCAGTTTACAAC -3'
|
Posted On |
2020-09-15 |