Mutagenetix > Incidental Mutation

Incidental Mutation 'R7976:Skint2'

650894

Institutional Source

Beutler Lab

Gene Symbol

Skint2

Ensembl Gene

ENSMUSG00000034359

Gene Name

selection and upkeep of intraepithelial T cells 2

Synonyms

OTTMUSG00000008540, B7S3

MMRRC Submission

046019-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R7976 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

112470795-112509445 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 112481329 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 64 (N64I)

Ref Sequence

ENSEMBL: ENSMUSP00000139831 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058791] [ENSMUST00000106560] [ENSMUST00000186969]

AlphaFold

A7XUX6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000058791
AA Change: N64I

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000061011
Gene: ENSMUSG00000034359
AA Change: N64I

Domain	Start	End	E-Value	Type
IGv	41	122	2.52e-9	SMART
Pfam:C2-set_2	140	225	2.7e-10	PFAM
Pfam:Ig_2	153	231	3.6e-3	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106560
AA Change: N64I

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000102170
Gene: ENSMUSG00000034359
AA Change: N64I

Domain	Start	End	E-Value	Type
IGv	41	122	2.52e-9	SMART
Pfam:C2-set_2	145	225	1.3e-10	PFAM
Pfam:Ig_2	153	231	2e-3	PFAM
transmembrane domain	241	263	N/A	INTRINSIC
transmembrane domain	276	298	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000186969
AA Change: N64I

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139831
Gene: ENSMUSG00000034359
AA Change: N64I

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
IGv	41	122	2.52e-9	SMART
Pfam:C2-set_2	145	225	2e-10	PFAM
Pfam:Ig_2	154	231	1.7e-3	PFAM
transmembrane domain	241	263	N/A	INTRINSIC
transmembrane domain	276	298	N/A	INTRINSIC
transmembrane domain	322	344	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adss1	A	C	12: 112,602,831 (GRCm39)	I341L	probably benign	Het
Aldh1b1	T	A	4: 45,803,092 (GRCm39)	M210K	possibly damaging	Het
Ankrd17	G	A	5: 90,431,451 (GRCm39)	Q778*	probably null	Het
Bmper	T	C	9: 23,318,106 (GRCm39)	V575A	probably damaging	Het
Brinp2	A	G	1: 158,073,913 (GRCm39)	V736A	probably benign	Het
Ccdc81	A	T	7: 89,515,723 (GRCm39)	L652*	probably null	Het
Cdt1	C	T	8: 123,298,585 (GRCm39)	R437W	probably damaging	Het
Ckb	A	C	12: 111,637,466 (GRCm39)	L165R	possibly damaging	Het
Col25a1	G	T	3: 130,290,075 (GRCm39)	G255V	probably damaging	Het
Ddx17	A	G	15: 79,420,156 (GRCm39)		probably null	Het
Dennd4a	G	T	9: 64,759,794 (GRCm39)	G300W	possibly damaging	Het
Dlg4	T	A	11: 69,930,008 (GRCm39)	I316N	probably damaging	Het
Dlgap2	C	T	8: 14,793,410 (GRCm39)	P467L	probably benign	Het
Dnah9	T	C	11: 65,732,227 (GRCm39)	I4226M	possibly damaging	Het
Drc1	G	A	5: 30,521,829 (GRCm39)	A734T	probably benign	Het
Entpd1	A	G	19: 40,600,865 (GRCm39)	M1V	probably null	Het
Exph5	T	G	9: 53,287,935 (GRCm39)	I1672S	possibly damaging	Het
Fam149b	T	A	14: 20,427,852 (GRCm39)	D379E	probably damaging	Het
Fgfr2	T	C	7: 129,787,074 (GRCm39)	T461A	probably damaging	Het
Frem1	A	G	4: 82,919,946 (GRCm39)	V469A	probably damaging	Het
Frem3	A	T	8: 81,338,231 (GRCm39)	K175*	probably null	Het
Fsd2	C	T	7: 81,209,629 (GRCm39)	G71E	probably benign	Het
Gcat	T	C	15: 78,919,188 (GRCm39)	I116T	probably damaging	Het
Gigyf2	G	A	1: 87,331,458 (GRCm39)	S202N	unknown	Het
Glra3	T	G	8: 56,565,911 (GRCm39)		probably null	Het
Golga4	C	T	9: 118,365,836 (GRCm39)	T296I	possibly damaging	Het
Herc1	C	T	9: 66,341,552 (GRCm39)	T1816I	possibly damaging	Het
Igfbpl1	C	A	4: 45,826,786 (GRCm39)	R3L	unknown	Het
Ighv15-2	A	T	12: 114,528,470 (GRCm39)	S28T	probably benign	Het
Kat2b	T	A	17: 53,955,835 (GRCm39)	M427K	probably benign	Het
Kdm4c	A	G	4: 74,295,906 (GRCm39)	T882A	probably damaging	Het
Kif1a	G	T	1: 92,967,496 (GRCm39)	F1138L	probably damaging	Het
Klhl20	A	T	1: 160,934,307 (GRCm39)	S237R	probably benign	Het
Lamc1	A	T	1: 153,123,014 (GRCm39)	N725K	probably damaging	Het
Lmtk3	A	G	7: 45,444,890 (GRCm39)	D1191G	unknown	Het
Ltbp1	C	A	17: 75,670,358 (GRCm39)	N1466K	possibly damaging	Het
Ly75	T	C	2: 60,195,432 (GRCm39)	E242G	probably damaging	Het
Lyrm1	T	C	7: 119,515,449 (GRCm39)	V113A	probably benign	Het
Mfsd13a	G	T	19: 46,360,446 (GRCm39)	A333S	probably benign	Het
Mllt10	T	C	2: 18,167,214 (GRCm39)	S380P	possibly damaging	Het
Mrc2	A	G	11: 105,238,829 (GRCm39)	K1295E	possibly damaging	Het
Muc5ac	A	T	7: 141,363,528 (GRCm39)	I2280F	unknown	Het
Neurod2	A	C	11: 98,218,023 (GRCm39)	F380L	probably damaging	Het
Ntrk3	G	A	7: 78,005,954 (GRCm39)	A469V	probably damaging	Het
Nup205	T	C	6: 35,175,888 (GRCm39)	F584L	probably damaging	Het
Oas1d	A	T	5: 121,057,210 (GRCm39)	Y272F	probably damaging	Het
Olfm3	T	C	3: 114,874,794 (GRCm39)	V30A	probably benign	Het
Or4c110	T	A	2: 88,831,973 (GRCm39)	I220F	probably damaging	Het
Or5b117	A	G	19: 13,431,563 (GRCm39)	I106T	probably benign	Het
Or8k22	A	G	2: 86,163,064 (GRCm39)	V212A	probably benign	Het
Pcdhga12	A	G	18: 37,901,427 (GRCm39)	Y753C	probably damaging	Het
Phox2b	A	G	5: 67,253,514 (GRCm39)	V294A	unknown	Het
Prdm2	A	T	4: 142,859,812 (GRCm39)	C1159*	probably null	Het
Ptpn12	G	T	5: 21,207,631 (GRCm39)	S275*	probably null	Het
Rigi	T	C	4: 40,209,894 (GRCm39)	M725V	probably damaging	Het
Rnf223	A	T	4: 156,216,776 (GRCm39)	E50D	probably damaging	Het
Rrp12	A	T	19: 41,879,548 (GRCm39)	Y169N	probably benign	Het
Sgip1	T	C	4: 102,757,736 (GRCm39)		probably null	Het
Shank2	T	C	7: 143,964,798 (GRCm39)	I802T	probably damaging	Het
Smpd3	A	C	8: 106,982,254 (GRCm39)	C617G	probably benign	Het
Tmem106c	G	C	15: 97,865,985 (GRCm39)	G192R	probably damaging	Het
Tmem72	T	C	6: 116,673,800 (GRCm39)	H106R	probably damaging	Het
Upf2	G	C	2: 6,030,926 (GRCm39)	V789L	unknown	Het
Vash1	A	G	12: 86,726,758 (GRCm39)		probably benign	Het
Vmn1r201	T	A	13: 22,658,875 (GRCm39)	Y30N	probably benign	Het
Xpr1	A	G	1: 155,166,035 (GRCm39)	F571L	possibly damaging	Het
Yif1a	T	C	19: 5,139,815 (GRCm39)	S87P	probably damaging	Het
Zer1	T	C	2: 29,997,520 (GRCm39)	Y462C	probably damaging	Het
Zfp597	G	A	16: 3,684,375 (GRCm39)	P127L	possibly damaging	Het
Zxdc	T	C	6: 90,375,749 (GRCm39)	S742P	probably benign	Het

Other mutations in Skint2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00272:Skint2	APN	4	112,481,409 (GRCm39)	missense	probably damaging	1.00
IGL00801:Skint2	APN	4	112,483,188 (GRCm39)	missense	possibly damaging	0.88
IGL01602:Skint2	APN	4	112,483,191 (GRCm39)	missense	probably benign	0.44
IGL01605:Skint2	APN	4	112,483,191 (GRCm39)	missense	probably benign	0.44
IGL02015:Skint2	APN	4	112,481,325 (GRCm39)	nonsense	probably null
IGL02694:Skint2	APN	4	112,473,792 (GRCm39)	splice site	probably benign
IGL03247:Skint2	APN	4	112,483,223 (GRCm39)	missense	probably benign	0.06
PIT4677001:Skint2	UTSW	4	112,483,135 (GRCm39)	missense	probably benign	0.10
R0054:Skint2	UTSW	4	112,502,660 (GRCm39)	missense	probably benign	0.15
R0054:Skint2	UTSW	4	112,502,660 (GRCm39)	missense	probably benign	0.15
R0190:Skint2	UTSW	4	112,473,729 (GRCm39)	missense	possibly damaging	0.85
R0479:Skint2	UTSW	4	112,481,238 (GRCm39)	missense	possibly damaging	0.47
R0625:Skint2	UTSW	4	112,481,283 (GRCm39)	missense	probably damaging	1.00
R1143:Skint2	UTSW	4	112,483,133 (GRCm39)	missense	probably benign	0.00
R1564:Skint2	UTSW	4	112,483,195 (GRCm39)	missense	probably damaging	1.00
R1861:Skint2	UTSW	4	112,504,315 (GRCm39)	intron	probably benign
R1864:Skint2	UTSW	4	112,483,106 (GRCm39)	missense	probably benign	0.10
R3079:Skint2	UTSW	4	112,496,870 (GRCm39)	missense	probably benign	0.01
R3891:Skint2	UTSW	4	112,481,383 (GRCm39)	missense	probably damaging	1.00
R4422:Skint2	UTSW	4	112,441,785 (GRCm39)	intron	probably benign
R4799:Skint2	UTSW	4	112,509,305 (GRCm39)	missense	probably benign	0.07
R5458:Skint2	UTSW	4	112,481,377 (GRCm39)	missense	possibly damaging	0.83
R5482:Skint2	UTSW	4	112,483,076 (GRCm39)	missense	probably damaging	1.00
R5603:Skint2	UTSW	4	112,506,961 (GRCm39)	missense	possibly damaging	0.91
R7068:Skint2	UTSW	4	112,481,548 (GRCm39)	missense	probably damaging	1.00
R7233:Skint2	UTSW	4	112,483,122 (GRCm39)	missense	probably damaging	0.99
R7335:Skint2	UTSW	4	112,481,415 (GRCm39)	missense	probably damaging	1.00
R7516:Skint2	UTSW	4	112,483,168 (GRCm39)	missense	probably damaging	1.00
R7790:Skint2	UTSW	4	112,473,751 (GRCm39)	missense	possibly damaging	0.71
R7878:Skint2	UTSW	4	112,506,942 (GRCm39)	missense	possibly damaging	0.85
R7941:Skint2	UTSW	4	112,483,187 (GRCm39)	missense	probably damaging	1.00
R7965:Skint2	UTSW	4	112,502,648 (GRCm39)	missense	probably benign	0.17
R8100:Skint2	UTSW	4	112,483,197 (GRCm39)	missense	probably damaging	0.99
R9014:Skint2	UTSW	4	112,483,026 (GRCm39)	missense	probably benign	0.00
R9114:Skint2	UTSW	4	112,496,834 (GRCm39)	missense	probably benign	0.00
R9228:Skint2	UTSW	4	112,483,039 (GRCm39)	missense	possibly damaging	0.88
R9245:Skint2	UTSW	4	112,502,616 (GRCm39)	missense	probably benign
R9336:Skint2	UTSW	4	112,483,054 (GRCm39)	missense	probably benign	0.02
R9370:Skint2	UTSW	4	112,481,259 (GRCm39)	missense	possibly damaging	0.87
R9606:Skint2	UTSW	4	112,483,147 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TCAGCACCTGCAATTGTTCC -3'
(R):5'- ACAGTGGTATGACCCATCATC -3'

Sequencing Primer
(F):5'- ACCTGCAATTGTTCCTTAAAATTTTC -3'
(R):5'- GTGGTATGACCCATCATCATCAG -3'

Posted On

2020-09-15